BAC Information

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BAC

Clone NameB6Ng01-039O04
Chromosome15 (Build37)10 (Build37)
Map Location 79,487,989 - 79,488,78626,867,360 - 26,867,475
singlet/doubletsingletsinglet
Overlap gene4933432B09Rik
Upstream geneLrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
Downstream genePgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O04.bB6Ng01-039O04.g
ACCDH867022DH867023
length801577
definitionDH867022|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O04, 5' end.DH867023|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,487,989 - 79,488,786)(26,867,360 - 26,867,475)
sequence
gaattccacatcaaaatcaaccatatctagtgtagcaaccgctacagaaa
cataaagcagaacacatttgaaagttgcgatcattctagaagtttttttg
tttgtttgtttgtttgtatgtttgtttgtttgcttgtttgtttttttcga
gacagggtttctctgtgtagccctggctgtcctggaactcagtctgttga
ccaggctggcctcaaactcagaaatccgcctgcctcccaagtgctgggat
taaaggcgtccgccaccaccgccaggctctagaagctttttgatattaaa
ccttgtgcgccctctaccggtgctatccccgaagcacctttcgtattttg
agataaagtctccctgggtactccttatctcatcctcctgcctcagcctc
tcagtgctggaattacagacacacacccagcctgccttcaacccctaccc
ttttgctttgtttgtttttttttttttaagatttatttatttatttatta
tatgtaagtacactgtagctgtcctcagacactccagaagagggagtcag
atctcgttacggatggttgtgagccaccatgtggttgctgggatttgaac
ttcggaccttcggaagagcagtcgggtgctcttacccactgagccatctc
accagccccgctttgtttgtttgatattttgagactggggctcaatatgt
agttctggctgctctcccaactttacaaaagtcctcccgcctcttttctc
cagagcgctgggattaaaggctagtgctccatacccggccctaggctttt
t
gaattccaggccagcctgagccacacagagcatcctgggccagcctgggc
tacgtgaaactctgtctcaaaaaaagtaaaaaacgggctggggagatggc
tcatcggttaagagccctgactgttcttccagaggccctgagttcaattc
ccagcaaccacatggtggctcacaaccatctgtaatggggtctgatgcac
tcttcttgtgtgtctgaagatggctacagtggactcgtataaataaaata
agtaaatcttaaaaaaaaaaaagtaaaaacaaaagcttgcagtaatggcg
tatgcctttaatcttagcacttgggaggcagaggttctaggagttgaaag
gccagcctgatctacatagaacatctcaggccagccagggatacagtgca
gtgaaacctggtcgaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaagaaagaaagaaagacagaaagaaagagag
gggggaaggaagaagagaaggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79487989_79488786
seq2: B6Ng01-039O04.b_47_847 (reverse)

seq1  AAAAAGCCTAGGGCCGGGTATGGAGCACTAGCCTTTAATCCCAGCGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCTAGGGCCGGGTATGGAGCACTAGCCTTTAATCCCAGCGCTCT  50

seq1  GGAG-AAAGAGGCGGGAGGACTTTTGT-AAGTTGGGAGAGCAGCCAGAAC  98
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGAAAAGAGGCGGGAGGACTTTTGTAAAGTTGGGAGAGCAGCCAGAAC  100

seq1  TACATATTGAGCCCCAGTCTC-AAATATCAAACAAACAAAGCGGGGCTGG  147
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACATATTGAGCCCCAGTCTCAAAATATCAAACAAACAAAGCGGGGCTGG  150

seq1  TGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGA  200

seq1  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGA  250

seq1  TCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACAT  300

seq1  ATAATAAATAAATAAATAAATCTTAAAAAAAAAAAAACAAACAAAGCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATAAATAAATCTTAAAAAAAAAAAAACAAACAAAGCAAA  350

seq1  AGGGTAGGGGTTGAAGGCAGGCTGGGTGTGTGTCTGTAATTCCAGCACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGGGTTGAAGGCAGGCTGGGTGTGTGTCTGTAATTCCAGCACTG  400

seq1  AGAGGCTGAGGCAGGAGGATGAGATAAGGAGTACCCAGGGAGACTTTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAGGCAGGAGGATGAGATAAGGAGTACCCAGGGAGACTTTATC  450

seq1  TCAAAATACGAAAGGTGCTTCGGGGATAGCACCGGTAGAGGGCGCACAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACGAAAGGTGCTTCGGGGATAGCACCGGTAGAGGGCGCACAAG  500

seq1  GTTTAATATCAAAAAGCTTCTAGAGCCTGGCGGTGGTGGCGGACGCCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATATCAAAAAGCTTCTAGAGCCTGGCGGTGGTGGCGGACGCCTTT  550

seq1  AATCCCAGCACTTGGGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTG  600

seq1  GTCAACAGACTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGACTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  650

seq1  CTCGAAAAAAACAAACAAGCAAACAAACAAACATACAAACAAACAAACAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAAAACAAACAAGCAAACAAACAAACATACAAACAAACAAACAA  700

seq1  ACAAAAAAACTTCTAGAATGATCGCAACTTTCAAATGTGTTCTGCTTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACTTCTAGAATGATCGCAACTTTCAAATGTGTTCTGCTTTAT  750

seq1  GTTTCTGTAGCGGTTGCTACACTAGATATGGTTGATTTTGATGTGGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTAGCGGTTGCTACACTAGATATGGTTGATTTTGATGTGGAATT  800

seq1  C  798
      |
seq2  C  801

seq1: chr10_26867360_26867475
seq2: B6Ng01-039O04.g_485_645 (reverse)

seq1  CTCCTCTCCTTCTCTTCTTCCT--CCTCATCCTTTTCTTTCTTTCTCTCT  48
      |||| |||||||||||||||||  || | ||  ||||||||| ||| |||
seq2  CTCC-CTCCTTCTCTTCTTCCTTCCCCCCTCTCTTTCTTTCTGTCTTTCT  49

seq1  TT--------------------------------------------CTCC  54
      ||                                            || |
seq2  TTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  99

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  104
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  149

seq1  TTCTTTCTTTCT  116
      ||||||||||||
seq2  TTCTTTCTTTCT  161