BAC Information

Click to search

BAC

Clone NameB6Ng01-040P01
Chromosome15 (Build37)
Map Location 38,142,524 - 38,304,938
singlet/doubletdoublet
Overlap geneOdf1, LOC382986, LOC667563, Klf10
Upstream geneLOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
Downstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P01.bB6Ng01-040P01.g
ACCDH867755DH867756
length353841
definitionDH867755|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P01, 5' end.DH867756|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,142,524 - 38,142,876)(38,304,100 - 38,304,938)
sequence
ctgggtaggtgacctctatattaatctgttgggtccaactctagggacat
ttcattaccagggtgttggggctggaaacttgctggggaggtctggaaac
ttactgaggaagtagctgaggaagtctagaaactaatgctgaccctacgt
ccttgtctcagggcaggtggcagggcaacttccaggcctggacttgcttg
gaattgcccagttcttggagacagagatttgcctcatctgaactgttcat
ttgaagcctgtcaaggaatcagcctagacttctcaacatgtagttgggtt
actattgttagagcttctctctctctctctctctctctctctctctctct
ctc
gaattccaacgctcaggcccacccactgggacaactggcccatagagaaa
agatgaccataagggagctccttggatagaggtggggctgtggaaagtgg
gaacactcccaaaatctggggagggtgacgtcatcccagccaaagccaat
caaaacaccctcttaggcagccagtggagggcttgctgggccaggagctg
tggagacttctagcagttgccaagaaaaaggaagagcctagcttgaggcc
ttgagccctgggaggccccaccctggcaggagaaagagactaggaggtgc
cgggccaagtggtccaaaggtcctatctgaattctccagcagagctctgg
cgaagtcacagaggcagtagccgaagcagccggagaggtttacttaccag
gatgatgcggcctccaacctcttagaaaagacaaaaaggcaggactggtg
gcaccggcctgacatatcactacttgggagactgaactagggaaactgtg
agcttgagaaatgtgagattagtgttcctttaatctaagatgttatatgg
ttcctcctttatcccggtgttcggaagctaattggacaactggacatgtg
aacggagaatcttttttttggggtttttttttttttttttttttttttgg
tttttcgagacagggtttctctgtatagtccctggaactctctttgtaga
ccaggctggcctcaaactcagaaattcgcctgcctctgctggggattaaa
agcgttcgccacccttgcccggctgtgaacagagaatcttgtgctttttt
tccaaagcattgatgctgaccctttggggttgctttctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_38142524_38142876
seq2: B6Ng01-040P01.b_47_399

seq1  CTGGGTAGGTGACCTCTATATTAATCTGTTGGGTCCAACTCTAGGGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGGTGACCTCTATATTAATCTGTTGGGTCCAACTCTAGGGACAT  50

seq1  TTCATTACCAGGGTGTTGGGGCTGGAAACTTGCTGGGGAGGTCTGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACCAGGGTGTTGGGGCTGGAAACTTGCTGGGGAGGTCTGGAAAC  100

seq1  TTACTGAGGAAGTAGCTGAGGAAGTCTAGAAACTAATGCTGACCCTACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGGAAGTAGCTGAGGAAGTCTAGAAACTAATGCTGACCCTACGT  150

seq1  CCTTGTCTCAGGGCAGGTGGCAGGGCAACTTCCAGGCCTGGACTTGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCAGGGCAGGTGGCAGGGCAACTTCCAGGCCTGGACTTGCTTG  200

seq1  GAATTGCCCAGTTCTTGGAGACAGAGATTTGCCTCATCTGAACTGTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCCAGTTCTTGGAGACAGAGATTTGCCTCATCTGAACTGTTCAT  250

seq1  TTGAAGCCTGTCAAGGAATCAGCCTAGACTTCTCAACATGTAGTTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCTGTCAAGGAATCAGCCTAGACTTCTCAACATGTAGTTGGGTT  300

seq1  ACTATTGTTAGAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTTAGAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  CTC  353
      |||
seq2  CTC  353

seq1: chr15_38304100_38304938
seq2: B6Ng01-040P01.g_69_909 (reverse)

seq1  TTCAGAATGCAACCCATAAGGCTCAGCATCAATGCTTTAGGTAAAGAAGC  50
      ||||||| |||||||  |||| |||||||||||||||| || ||| ||||
seq2  TTCAGAAAGCAACCCCAAAGGGTCAGCATCAATGCTTT-GGAAAAAAAGC  49

seq1  ACAAGATTCTCTGTTCACAGCCGGGC-ATGGTGGCGCACGCCTTTAAT-C  98
      |||||||||||||||||||||||||| | ||||||| |||| |||||| |
seq2  ACAAGATTCTCTGTTCACAGCCGGGCAAGGGTGGCGAACGCTTTTAATCC  99

seq1  CCAGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  148
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CCAGCAGAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAA  149

seq1  GTGAGTTCCA-GGACTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  197
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCCAGGGACTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  199

seq1  AAAAAAAAAAAAAAAAAAACCCCAAAAAAAAGATTCTCCGTTCACATGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAACCCCAAAAAAAAGATTCTCCGTTCACATGTC  249

seq1  CAGTTGTCCAATTAGCTTCCGAACACCGGGATAAAGGAGGAACCATATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCCAATTAGCTTCCGAACACCGGGATAAAGGAGGAACCATATAA  299

seq1  CATCTTAGATTAAAGGAACACTAATCTCACATTTCTCAAGCTCACAGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGATTAAAGGAACACTAATCTCACATTTCTCAAGCTCACAGTTT  349

seq1  CCCTAGTTCAGTCTCCCAAGTAGTGATATGTCAGGCCGGTGCCACCAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTCAGTCTCCCAAGTAGTGATATGTCAGGCCGGTGCCACCAGTC  399

seq1  CTGCCTTTTTGTCTTTTCTAAGAGGTTGGAGGCCGCATCATCCTGGTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTTGTCTTTTCTAAGAGGTTGGAGGCCGCATCATCCTGGTAAG  449

seq1  TAAACCTCTCCGGCTGCTTCGGCTACTGCCTCTGTGACTTCGCCAGAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCTCCGGCTGCTTCGGCTACTGCCTCTGTGACTTCGCCAGAGCT  499

seq1  CTGCTGGAGAATTCAGATAGGACCTTTGGACCACTTGGCCCGGCACCTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGAATTCAGATAGGACCTTTGGACCACTTGGCCCGGCACCTCC  549

seq1  TAGTCTCTTTCTCCTGCCAGGGTGGGGCCTCCCAGGGCTCAAGGCCTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTTTCTCCTGCCAGGGTGGGGCCTCCCAGGGCTCAAGGCCTCAA  599

seq1  GCTAGGCTCTTCCTTTTTCTTGGCAACTGCTAGAAGTCTCCACAGCTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTCTTCCTTTTTCTTGGCAACTGCTAGAAGTCTCCACAGCTCCT  649

seq1  GGCCCAGCAAGCCCTCCACTGGCTGCCTAAGAGGGTGTTTTGATTGGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCAAGCCCTCCACTGGCTGCCTAAGAGGGTGTTTTGATTGGCTT  699

seq1  TGGCTGGGATGACGTCACCCTCCCCAGATTTTGGGAGTGTTCCCACTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGATGACGTCACCCTCCCCAGATTTTGGGAGTGTTCCCACTTTC  749

seq1  CACAGCCCCACCTCTATCCAAGGAGCTCCCTTATGGTCATCTTTTCTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCCACCTCTATCCAAGGAGCTCCCTTATGGTCATCTTTTCTCTA  799

seq1  TGGGCCAGTTGTCCCAGTGGGTGGGCCTGAGCGTTGGAATTC  839
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGTTGTCCCAGTGGGTGGGCCTGAGCGTTGGAATTC  841