BAC Information

Click to search

BAC

Clone NameB6Ng01-041I10
Chromosome15 (Build37)
Map Location 60,293,843 - 60,453,751
singlet/doubletdoublet
Overlap geneLOC623094
Upstream geneNsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832
Downstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I10.bB6Ng01-041I10.g
ACCDH868168DH868169
length760784
definitionDH868168|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I10, 5' end.DH868169|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,293,843 - 60,294,601)(60,452,973 - 60,453,751)
sequence
gaattcaatcatctgagataaatatgcactgtttcatagagacagggaaa
tttttgttaaaaatatataaatataatctggcaaattagtattaggcaaa
acaaagcaatataaaagtagacaaaaacctcaaaaaaagatatatcaggg
aagtgtataaacacatgttgttattaatataaaaattgtggtaaattgtg
tagatgtacaacattcacaaaaagatttcatgacttctgaattcatttta
aaaacttaaaagacaaatcagagagaagacaatgttgcccacttccttag
tagcttttcaatatagtactagaagttttatctagagcaataagacaact
aaacgagatcaagtggattcaaaatggaaagaagtcaaagtattgctatt
tgcagatgatgtgatagtgatctcaaaatttctaccagagaactcctaca
gctgataaataccttcagtaaattgactggttacagaattaatacaaaaa
agcagtagccctccttaatataaataatcaatgagctgggaaaaattagg
aaagcaccattcttcacaatagccaaaacgaatataaaatattttggtgt
aactctaacccaagcaagtgaaagtgctgtgtgacaagatctttgagtct
ttgaagaaaaatcaaaaatgaggaatatttcagaagatacagaagataga
aaggtctacaatactcattaattgataggattaacataggaaaactggcc
atcttaccaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagttcaccttcttgagttctttatatatattggatattagtccc
ctatctgatttagaataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatgttgtcttttgacaaggcacatttctaaaaactta
cttctttctcactttactccataggccttctgtagctcctacctgtattc
tattttttttcaccctccagagatttgtttctatcaatattggatcttgc
tatttatctggtttacagatgctgtccattcttctctgtgttccccaggc
tagctcacaaaagtccatagagccttgtttcacctgttctctcagttcta
tttctggccattgctggcttatctctcaagctcttgctttattctgaacc
tgttttccttttgcctacaaagcagtgttctatttgcctttcagatttgc
ccttggtatagattgacttcctttatttctatgctttcataacacaatgt
acttcctggtgagctcgtctctagctttgcagttttggtagaaaataagc
ttttgttattttagtgttttgttagtaaaaagagattgtattaccaagtt
ttactgtatgtttagaaggatgttgtgtaaaaatcaaattacaaagcatg
gaaaaatatgcctagtatcacttacactttattctctacacattttgatg
tgataaataccaactttttatttttccaaatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60293843_60294601
seq2: B6Ng01-041I10.b_44_803

seq1  GAATTCAATCATCTGAGATAAATATGCACTG-AACATAGAGACAGGGAAA  49
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  GAATTCAATCATCTGAGATAAATATGCACTGTTTCATAGAGACAGGGAAA  50

seq1  TTTTTGTTAAAAATATATAAATATAATCTGGCAAATTAGTATTAGGCAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTAAAAATATATAAATATAATCTGGCAAATTAGTATTAGGCAAA  100

seq1  ACAAAGCAATATAAAAGTAGACAAAAACCTCAAAAAAAGATATATCAGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAATATAAAAGTAGACAAAAACCTCAAAAAAAGATATATCAGGG  150

seq1  AAGTGTATAAACACATGTTGTTATTAATATAAAAATTGTGGTAAATTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATAAACACATGTTGTTATTAATATAAAAATTGTGGTAAATTGTG  200

seq1  TAGATGTACAACATTCACAAAAAGATTTCATGACTTCTGAATTCATTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTACAACATTCACAAAAAGATTTCATGACTTCTGAATTCATTTTA  250

seq1  AAAACTTAAAAGACAAATCAGAGAGAAGACAATGTTGCCCACTTCCTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAAGACAAATCAGAGAGAAGACAATGTTGCCCACTTCCTTAG  300

seq1  TAGCTTTTCAATATAGTACTAGAAGTTTTATCTAGAGCAATAAGACAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTCAATATAGTACTAGAAGTTTTATCTAGAGCAATAAGACAACT  350

seq1  AAACGAGATCAAGTGGATTCAAAATGGAAAGAAGTCAAAGTATTGCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGATCAAGTGGATTCAAAATGGAAAGAAGTCAAAGTATTGCTATT  400

seq1  TGCAGATGATGTGATAGTGATCTCAAAATTTCTACCAGAGAACTCCTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGATGTGATAGTGATCTCAAAATTTCTACCAGAGAACTCCTACA  450

seq1  GCTGATAAATACCTTCAGTAAATTGACTGGTTACAGAATTAATACAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAAATACCTTCAGTAAATTGACTGGTTACAGAATTAATACAAAAA  500

seq1  AGCAGTAGCCCTCCTTAATATAAATAATCAATGAGCTGGGAAAAATTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGCCCTCCTTAATATAAATAATCAATGAGCTGGGAAAAATTAGG  550

seq1  AAAGCACCATTCTTCACAATAGCCAAAACGAATATAAAATATTTTGGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCATTCTTCACAATAGCCAAAACGAATATAAAATATTTTGGTGT  600

seq1  AACTCTAACCCAAGCAAGTGAAAGTGCTGTGTGACAAGATCTTTGAGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAACCCAAGCAAGTGAAAGTGCTGTGTGACAAGATCTTTGAGTCT  650

seq1  TTGAAGAAAAATCAAAAATGAGGAATATTTCAGAAGATACAGAAGATAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAAATCAAAAATGAGGAATATTTCAGAAGATACAGAAGATAGA  700

seq1  AAGGTCTACAATACTCATTAATTGATAGGATTAACATAGGAAAACTGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTACAATACTCATTAATTGATAGGATTAACATAGGAAAACTGGCC  750

seq1  ATCTTACCAA  759
      ||||||||||
seq2  ATCTTACCAA  760

seq1: chr15_60452973_60453751
seq2: B6Ng01-041I10.g_67_850 (reverse)

seq1  CAGATTTGG-AAAATAAAAAGTTGGTATTTATCACATC-AAATGTGTAGA  48
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CAGATTTGGAAAAATAAAAAGTTGGTATTTATCACATCAAAATGTGTAGA  50

seq1  GAATAGAGTGTAAGTGATACTAGGCATA-TTTTCCATGCTTTGTAATTTG  97
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATAAAGTGTAAGTGATACTAGGCATATTTTTCCATGCTTTGTAATTTG  100

seq1  A-TTTTACACAACATCCTTCTAAACATACAGT-AAACTTGGTAATACAAT  145
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTTTACACAACATCCTTCTAAACATACAGTAAAACTTGGTAATACAAT  150

seq1  CTCTTTTTACTAACAAAACACTAAAATAACAAAAGCTTATTTTCTACCAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTACTAACAAAACACTAAAATAACAAAAGCTTATTTTCTACCAA  200

seq1  AACTGCAAAGCTAGAGACGAGCTCACCAGGAAGTACATTGTGTTATGAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAGCTAGAGACGAGCTCACCAGGAAGTACATTGTGTTATGAAA  250

seq1  GCATAGAAATAAAGGAAGTCAATCTATACCAAGGGCAAATCTGAAAGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAATAAAGGAAGTCAATCTATACCAAGGGCAAATCTGAAAGGCA  300

seq1  AATAGAACACTGCTTTGTAGGCAAAAGGAAAACAGGTTCAGAATAAAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACACTGCTTTGTAGGCAAAAGGAAAACAGGTTCAGAATAAAGCA  350

seq1  AGAGCTTGAGAGATAAGCCAGCAATGGCCAGAAATAGAACTGAGAGAACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGAGAGATAAGCCAGCAATGGCCAGAAATAGAACTGAGAGAACA  400

seq1  GGTGAAACAAGGCTCTATGGACTTTTGTGAGCTAGCCTGGGGAACACAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACAAGGCTCTATGGACTTTTGTGAGCTAGCCTGGGGAACACAGA  450

seq1  GAAGAATGGACAGCATCTGTAAACCAGATAAATAGCAAGATCCAATATTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGACAGCATCTGTAAACCAGATAAATAGCAAGATCCAATATTG  500

seq1  ATAGAAACAAATCTCTGGAGGGTGAAAAAAAATAGAATACAGGTAGGAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACAAATCTCTGGAGGGTGAAAAAAAATAGAATACAGGTAGGAGC  550

seq1  TACAGAAGGCCTATGGAGTAAAGTGAGAAAGAAGTAAGTTTTTAGAAATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGCCTATGGAGTAAAGTGAGAAAGAAGTAAGTTTTTAGAAATG  600

seq1  TGCCTTGTCAAAAGACAACATCAATAAGACAAAAAGACCACCAACAGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCAAAAGACAACATCAATAAGACAAAAAGACCACCAACAGATT  650

seq1  GGGAAAGGATCTTTACCTATTCTAAATCAGATAGGGGACTAATATCCAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGATCTTTACCTATTCTAAATCAGATAGGGGACTAATATCCAAT  700

seq1  ATATATAAAGAACTCAAGAAGGTGAACTCCAGAAAATCAAATAACCCCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAGAACTCAAGAAGGTGAACTCCAGAAAATCAAATAACCCCAT  750

seq1  TAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  779
      ||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  784