BAC Information

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BAC

Clone NameB6Ng01-042C02
Chromosome15 (Build37)
Map Location 12,347,776 - 12,501,220
singlet/doubletdoublet
Overlap genePdzd2, LOC100040109
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C02.bB6Ng01-042C02.g
ACCDH868592DH868593
length1,2191,093
definitionDH868592|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C02, 5' end.DH868593|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,347,776 - 12,349,010)(12,500,125 - 12,501,220)
sequence
gaattcagtctatatcttaagtgtacatgtgctacatgcatgtgtgcaca
cacatgggtgggagtatgcacatccacaggtgtgtagaggctagaggttg
acagtagatgtgtttctcaattattctgcaccatttatttaatttactgt
gggtggtatacgtgcacacgcatgcagtatatgcatgtgcatatggaacc
agccagagatgaatgctgtcagatgtttgctatctacacattgtttctgt
acagtatatccgtgtgtgtgtgtgtgtctagtaaaaggccagaggttgat
ggcaaatgtcctcccttttgctcttcacctctgttttaagttcaggtctc
ttactaaactctgagtttgctgtttcagatagacaggctagtcagtaagg
ccctggggaattcccctgtctctgcccagtgccagggctacagaactgtg
tcgctcctggcttttacatgcgtactaaggagctgaacttagtgctcgac
ccactgagccacctctccagttcccagaatgtaattttgtatgaatgccg
tcataaaattttttattttattttatttttgttttttcgagacagggttt
ctccgtgtagccctggctgtcctggaactcactttgtagaccaggctggc
cttgaactcagaaatccatctgcctctgcctcccaagtgctgggattaaa
ggtgtgcgccaccactgcccggcaaaattttgtttttgagggagacaaag
tatccaacaaaacagaagtgccaaggacctctgagagtcctatgggtcat
ctgctgtctcccccagagcacaggccaggcagtctaaggaaatacccagg
gcgtgtaaatcatggattctatcagttctgaaagctgcaatctctttcac
tatttctcctgcttagctgagatgagaacttgatgtgagataaacccttt
gctatttgttctagttggctgagactttttgggggcatggggcacctgag
agtcgactcctgaaagggttacctgaaacctcatcaggataatgaaccaa
acatttcaggaatggaagttcacagatacaccaaatgctgacatgcactg
gtgggctcgctaggtttaacggactgctctctcagggctgtctcgccagt
gaaaacagttctgaagttaggaatagggtcatctccctatgtgctcaggt
aatccctctgcaagatgag
gaattctcccaggggtacggccttccctggtgctttatgaggtgtgagga
agcagctccctccctgtgcttttcctggtcacagctcattaaccagaagt
caagagatgttctagggaggatgaccctagagagaggaggtgacactgac
acagacagtccctagtgattgcctgggaaacagagaggggtcaaagtgat
tggatttaatgctacaaagagtaaccaaacggtgggaaaaactgaagttg
gaatgaaaagtttggccaaagataaggtgctcaaaataataaataaaaat
gagtaaaaaattaatttttagaaaataattttaatttttattgaaaatat
gttttatacagtatattctaatcctggttgaccctgttttttttttaagg
aatatttctttataataaataagatgagaatccaatccatgaaatttttt
tctctattttagttcgtattcttttatcttttaaacttctgtaagttatt
gggatgataaaagttaacgtaacggttcctcagaaaatagaggtagactt
taaaaacaaaacaaaactatgtgatccagcaattctaagcatatttccct
aaagaaatgaaagccgaggattgaccagacagtcatacagctgtatctgc
agcagaatgcttcataattgtcaaaaggtagaaaacaccccaaatgtctg
tggatggattcgtaatcacactgtggaaagacacgccactgtggtgtgaa
tgttcattacaggcccatgtgttgatagcactgtcgtgagaggttgtgga
accttagcagcataagataggacctcactgttgggcgctaaccagtgagg
gcaggtctcaggggatgtagttcagcgtgtttcctgatccaaacgtgagg
aacctggctacatgctcccaatgccacagaaagtgccatcccagtcatgt
ggttttccattcatagtggactgtgttgttccaaacgtgagcctttctct
tttgaaattttttagaatgttttgcatagcaaagaaaaaatactgtgtgt
gtttcctgtttcttaaaaacaatgatagcagcggggcgtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12347776_12349010
seq2: B6Ng01-042C02.b_36_1254

seq1  GAATTCAGTCTATATCTTAAGTGTACATGTGCTACATGCATGTGTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTATATCTTAAGTGTACATGTGCTACATGCATGTGTGCACA  50

seq1  CACATGGGTGGGAGTATGCACATCCACAGGTGTGTAGAGGCTAGAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTGGGAGTATGCACATCCACAGGTGTGTAGAGGCTAGAGGTTG  100

seq1  ACAGTAGATGTGTTTCTCAATTATTCTGCACCATTTATTTAATTTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGATGTGTTTCTCAATTATTCTGCACCATTTATTTAATTTACTGT  150

seq1  GGGTGGTATACGTGCACACGCATGCAGTATATGCATGTGCATATGGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTATACGTGCACACGCATGCAGTATATGCATGTGCATATGGAACC  200

seq1  AGCCAGAGATGAATGCTGTCAGATGTTTGCTATCTACACATTGTTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGATGAATGCTGTCAGATGTTTGCTATCTACACATTGTTTCTGT  250

seq1  ACAGTATATCCGTGTGTGTGTGTGTGTCTAGTAAAAGGCCAGAGGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATATCCGTGTGTGTGTGTGTGTCTAGTAAAAGGCCAGAGGTTGAT  300

seq1  GGCAAATGTCCTCCCTTTTGCTCTTCACCTCTGTTTTAAGTTCAGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTCCTCCCTTTTGCTCTTCACCTCTGTTTTAAGTTCAGGTCTC  350

seq1  TTACTAAACTCTGAGTTTGCTGTTTCAGATAGACAGGCTAGTCAGTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAACTCTGAGTTTGCTGTTTCAGATAGACAGGCTAGTCAGTAAGG  400

seq1  CCCTGGGGAATTCCCCTGTCTCTGCCCAGTGCCAGGGCTACAGAACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGAATTCCCCTGTCTCTGCCCAGTGCCAGGGCTACAGAACTGTG  450

seq1  TCGCTCCTGGCTTTTACATGCGTACTAAGGAGCTGAACTTAGTGCTCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTGGCTTTTACATGCGTACTAAGGAGCTGAACTTAGTGCTCGAC  500

seq1  CCACTGAGCCACCTCTCCAGTTCCCAGAATGTAATTTTGTATGAATGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCACCTCTCCAGTTCCCAGAATGTAATTTTGTATGAATGCCG  550

seq1  TCATAAAATTTTTTATTTTATTTTATTTTTGTTTTTTCGAGACAGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATTTTTTATTTTATTTTATTTTTGTTTTTTCGAGACAGGGTTT  600

seq1  CTCCGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  650

seq1  CTTGAACTCAGAAATCCATCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCCATCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  700

seq1  GGTGTGCGCCACCACTGCCCGGCAAAATTTTGTTTTTGAGGGAGACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCGCCACCACTGCCCGGCAAAATTTTGTTTTTGAGGGAGACAAAG  750

seq1  TATCCAACAAAACAGAAGTGCCAAGGACCTCTGAGAGTCCTATGGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACAAAACAGAAGTGCCAAGGACCTCTGAGAGTCCTATGGGTCAT  800

seq1  CTGCTGTCTCCCCCAGAGCACAGGCCAGGCAGTCTAAGGAAATACCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTCCCCCAGAGCACAGGCCAGGCAGTCTAAGGAAATACCCAGG  850

seq1  GCGTGTAAATCATGGATTCTATCAGTTCTGAAAGCTGCAATCTCTTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAAATCATGGATTCTATCAGTTCTGAAAGCTGCAATCTCTTTCAC  900

seq1  TATTTCTCCTGCTTAGCTGAGATGAGAACTTGATGTGAGATAAACCCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCCTGCTTAGCTGAGATGAGAACTTGATGTGAGATAAACCCTTT  950

seq1  GCTATTTGTTCTAGTTGGCTGAGGACTTTTTGGGGGGCATGGGGCACCTG  1000
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  GCTATTTGTTCTAGTTGGCTGA-GACTTTTT-GGGGGCATGGGGCACCTG  998

seq1  AGAGTCGACT-CTGAAAGGGTTACCTGAAACCTCATCAAGATAAATGAAC  1049
      |||||||||| ||||||||||||||||||||||||||| ||| |||||||
seq2  AGAGTCGACTCCTGAAAGGGTTACCTGAAACCTCATCAGGAT-AATGAAC  1047

seq1  CAAACA-TTCAGGAAATGGAAGTTTCAACAGATACA-CAAATGCTGACAT  1097
      |||||| |||||| ||||||||||   ||||||||| |||||||||||||
seq2  CAAACATTTCAGG-AATGGAAGTT--CACAGATACACCAAATGCTGACAT  1094

seq1  GCACTTTGTTGGGCT-GCTAGGTTTAACGGAGCTGCTCTTCCAGGGCCTG  1146
      ||||  || |||||| ||||||||||||||| |||||||  ||||| |||
seq2  GCAC--TGGTGGGCTCGCTAGGTTTAACGGA-CTGCTCTCTCAGGG-CTG  1140

seq1  CCTCGCCAGTGGAAAAACAGTCCTGAGGTTTTAAGGAGATAAAGGGCTCA  1196
       ||||||||||  |||||||| |||| |||   |||| |||   || |||
seq2  TCTCGCCAGTG--AAAACAGTTCTGAAGTT---AGGA-ATA---GGGTCA  1181

seq1  TCTCCCTAGGTGC-AAGGTTAACCCTCTGCAGAGGATGAG  1235
      |||||||| ||||  |||| | ||||||||  | ||||||
seq2  TCTCCCTATGTGCTCAGGTAATCCCTCTGC--AAGATGAG  1219

seq1: chr15_12500125_12501220
seq2: B6Ng01-042C02.g_68_1160 (reverse)

seq1  TACCACGCCCGGCTGCTATCA-TGTTTTTAAGAAACAGGAACACACAC-C  48
      |||||||||| |||||||||| ||||||||||||||||||| |||||| |
seq2  TACCACGCCCCGCTGCTATCATTGTTTTTAAGAAACAGGAA-ACACACAC  49

seq1  AGTATTTTTATCTTTGCTATGGCAAAACATCTAAAAAAAATTTCAAAAGA  98
      ||||||||| |||||||||| ||||||||| |  ||||||||||||||||
seq2  AGTATTTTT-TCTTTGCTAT-GCAAAACAT-TCTAAAAAATTTCAAAAGA  96

seq1  GGAAGGCTCACCGTTTGGAAC-ACACAGTCCACTATGAATGGAAAACCAC  147
      | |||||||| |||||||||| ||||||||||||||||||||||||||| 
seq2  GAAAGGCTCA-CGTTTGGAACAACACAGTCCACTATGAATGGAAAACCA-  144

seq1  CATGACTGGGATGGCACTTTCTGTGGCATTGGGAGCATGTAGCCAGGTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGGGATGGCACTTTCTGTGGCATTGGGAGCATGTAGCCAGGTTC  194

seq1  CTCACGTTTGGATCAGGAAACACGCTGAACTACATCCCCTGAGACCTGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTTGGATCAGGAAACACGCTGAACTACATCCCCTGAGACCTGCC  244

seq1  CTCACTGGTTAGCGCCCAACAGTGAGGTCCTATCTTATGCTGCTAAGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTTAGCGCCCAACAGTGAGGTCCTATCTTATGCTGCTAAGGTT  294

seq1  CCACAACCTCTCACGACAGTGCTATCAACACATGGGCCTGTAATGAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACCTCTCACGACAGTGCTATCAACACATGGGCCTGTAATGAACAT  344

seq1  TCACACCACAGTGGCGTGTCTTTCCACAGTGTGATTACGAATCCATCCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCACAGTGGCGTGTCTTTCCACAGTGTGATTACGAATCCATCCAC  394

seq1  AGACATTTGGGGTGTTTTCTACCTTTTGACAATTATGAAGCATTCTGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGGGGTGTTTTCTACCTTTTGACAATTATGAAGCATTCTGCTG  444

seq1  CAGATACAGCTGTATGACTGTCTGGTCAATCCTCGGCTTTCATTTCTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGCTGTATGACTGTCTGGTCAATCCTCGGCTTTCATTTCTTTA  494

seq1  GGGAAATATGCTTAGAATTGCTGGATCACATAGTTTTGTTTTGTTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATGCTTAGAATTGCTGGATCACATAGTTTTGTTTTGTTTTTAA  544

seq1  AGTCTACCTCTATTTTCTGAGGAACCGTTACGTTAACTTTTATCATCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCTCTATTTTCTGAGGAACCGTTACGTTAACTTTTATCATCCCA  594

seq1  ATAACTTACAGAAGTTTAAAAGATAAAAGAATACGAACTAAAATAGAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTACAGAAGTTTAAAAGATAAAAGAATACGAACTAAAATAGAGAA  644

seq1  AAAAATTTCATGGATTGGATTCTCATCTTATTTATTATAAAGAAATATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTCATGGATTGGATTCTCATCTTATTTATTATAAAGAAATATTC  694

seq1  CTTAAAAAAAAAACAGGGTCAACCAGGATTAGAATATACTGTATAAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAACAGGGTCAACCAGGATTAGAATATACTGTATAAAACA  744

seq1  TATTTTCAATAAAAATTAAAATTATTTTCTAAAAATTAATTTTTTACTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATAAAAATTAAAATTATTTTCTAAAAATTAATTTTTTACTCA  794

seq1  TTTTTATTTATTATTTTGAGCACCTTATCTTTGGCCAAACTTTTCATTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTATTTTGAGCACCTTATCTTTGGCCAAACTTTTCATTCC  844

seq1  AACTTCAGTTTTTCCCACCGTTTGGTTACTCTTTGTAGCATTAAATCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGTTTTTCCCACCGTTTGGTTACTCTTTGTAGCATTAAATCCAA  894

seq1  TCACTTTGACCCCTCTCTGTTTCCCAGGCAATCACTAGGGACTGTCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGACCCCTCTCTGTTTCCCAGGCAATCACTAGGGACTGTCTGTG  944

seq1  TCAGTGTCACCTCCTCTCTCTAGGGTCATCCTCCCTAGAACATCTCTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCACCTCCTCTCTCTAGGGTCATCCTCCCTAGAACATCTCTTGA  994

seq1  CTTCTGGTTAATGAGCTGTGACCAGGAAAAGCACAGGGAGGGAGCTGCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTAATGAGCTGTGACCAGGAAAAGCACAGGGAGGGAGCTGCTT  1044

seq1  CCTCACACCTCATAAAGCACCAGGGAAGGCCGTACCCCTGGGAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCTCATAAAGCACCAGGGAAGGCCGTACCCCTGGGAGAATTC  1093