BAC Information

Click to search

BAC

Clone NameB6Ng01-043A06
Chromosome15 (Build37)
Map Location 32,470,484 - 32,573,692
singlet/doubletdoublet
Overlap geneSema5a
Upstream geneCmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043A06.bB6Ng01-043A06.g
ACCDH869208DH869209
length1,034882
definitionDH869208|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A06, 5' end.DH869209|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,470,484 - 32,471,522)(32,572,807 - 32,573,692)
sequence
gaattctctcctgtcagtcccctgtttccatgactactgttccttgactg
cctggttcaactcttagggcacaggtttggtgttccaaccttcattccat
cagttatcagtcgtggaaatccctgtggccatcggtctttgccctgtgaa
gctaaccatccagccctggaccacgagctgtggcaatggcttccttatgg
ctcgtgtgcctttttgaaggcctttggcacacagtgtggaagttagcaat
agggtatgagtacatgaatacactaaggtattcctctgatcatcctcacc
gcttttgatgatggggacaagatttcatcctttctttccatacagtagat
ttagcaccttatctacctgtgcccaccatggcatgacaacccaaaataac
caaatctgctcccgacatccgacattatctggagaatctgtgctttcatt
tatttaatatacacaaattagaaatttttgcattgttcatttttttcctg
tcccctgaagcatatatatatatatattttattgcaccaggaatctactt
acatatttggttaacagactttcaaaaagtgctaatagttaattctattc
ttcttcctggacttcagtctctatgtggtccttgtgatttagaaaaacaa
caccaagacttgttgagccatggggtttctggggtgtctctgcagcattg
tctacaaacccttaatcaaagcattcagctagttttcattttctcgtgta
ttattgctacttagggaaattgctcaactgaacccaccaggccatgtttc
acctccagctgtgacctatggttaattttgtatttagaatttaaataaat
ttttagaatagtattattcatgcccagtaggaatacactcctgatccaat
gaaagggaccaattttcaatacacaaaatcgagttttcctagtaccataa
ggaaatgaaaacaaatgtacttacatcaaatcatcctattatatttcgta
tattttgttttatgattaaggtaatggcaaattt
gaattctgaagcaaaatctggggtaggtgggctctaggcatatacctagc
tctctcatttgccttgtgaggcatgcagagaagagccaagaagctctagt
gattcactagctgggagttgggttgtaactgacacctgtgtacgtatacc
agtgtctaggtacatcacattctaaggtcttcaaagagctcagtcaccag
ggagggacactgttagatatggtcattctttcagctggagatgtgtaccc
cagcgtccacaaaaggaattgagaatttcatgcatgcatacaatgcaatt
tattacacatgtaataaatatgtgtatatgtatatgtatacaccttatgc
ctgagtcatcaaagcattcattccggacaatgacttgatgcttgaggata
cagtgatccagaggccagtgagaatgacttagatgcacacatgaggtgta
ggcctcccctctgtgtcaaaaatctgcccttcaaatatgctagtgtttct
ataaccactgtgctatatcataacaataaacaaacgctaatgttttggaa
taccatcagtatttgcattggcaatcaaacctatcacataaattggaaat
ttcacaagggcaaaatttcacttcctttcatatgcctttctgtggaatga
tctgtctatgattgtcattattgacatcaacttacaataaggatgctgtg
tactgctttccaaattctgtggcctgtacagtgtttagaatgtaggtaca
ggatcaatctctcatggatttctacagaaaaattttatgtgcaagaacag
agcccacacagatagcagaatagaaaaatgaattagttcagcaagaaccg
aagttcttcataagacaccaatgtcctcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32470484_32471522
seq2: B6Ng01-043A06.b_46_1079

seq1  GAATTCTCTCCTGTCAGTCCCCTGTTTCCATGACTACTGTTCCTTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTGTCAGTCCCCTGTTTCCATGACTACTGTTCCTTGACTG  50

seq1  CCTGGTTCAACTCTTAGGGCACAGGTTTGGTGTTCCAACCTTCATTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCAACTCTTAGGGCACAGGTTTGGTGTTCCAACCTTCATTCCAT  100

seq1  CAGTTATCAGTCGTGGAAATCCCTGTGGCCATCGGTCTTTGCCCTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCAGTCGTGGAAATCCCTGTGGCCATCGGTCTTTGCCCTGTGAA  150

seq1  GCTAACCATCCAGCCCTGGACCACGAGCTGTGGCAATGGCTTCCTTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCATCCAGCCCTGGACCACGAGCTGTGGCAATGGCTTCCTTATGG  200

seq1  CTCGTGTGCCTTTTTGAAGGCCTTTGGCACACAGTGTGGAAGTTAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTGCCTTTTTGAAGGCCTTTGGCACACAGTGTGGAAGTTAGCAAT  250

seq1  AGGGTATGAGTACATGAATACACTAAGGTATTCCTCTGATCATCCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATGAGTACATGAATACACTAAGGTATTCCTCTGATCATCCTCACC  300

seq1  GCTTTTGATGATGGGGACAAGATTTCATCCTTTCTTTCCATACAGTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGATGATGGGGACAAGATTTCATCCTTTCTTTCCATACAGTAGAT  350

seq1  TTAGCACCTTATCTACCTGTGCCCACCATGGCATGACAACCCAAAATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCTTATCTACCTGTGCCCACCATGGCATGACAACCCAAAATAAC  400

seq1  CAAATCTGCTCCCGACATCCGACATTATCTGGAGAATCTGTGCTTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGCTCCCGACATCCGACATTATCTGGAGAATCTGTGCTTTCATT  450

seq1  TATTTAATATACACAAATTAGAAATTTTTGCATTGTTCATTTTTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATATACACAAATTAGAAATTTTTGCATTGTTCATTTTTTTCCTG  500

seq1  TCCCCTGAAGCATATATATATATATATTTTATTGCACCAGGAATCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAAGCATATATATATATATATTTTATTGCACCAGGAATCTACTT  550

seq1  ACATATTTGGTTAACAGACTTTCAAAAAGTGCTAATAGTTAATTCTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGGTTAACAGACTTTCAAAAAGTGCTAATAGTTAATTCTATTC  600

seq1  TTCTTCCTGGACTTCAGTCTCTATGTGGTCCTTGTGATTTAGAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGGACTTCAGTCTCTATGTGGTCCTTGTGATTTAGAAAAACAA  650

seq1  CACCAAGACTTGTTGAGCCATGGGGTTTCTGGGGTGTCTCTGCAGCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGACTTGTTGAGCCATGGGGTTTCTGGGGTGTCTCTGCAGCATTG  700

seq1  TCTACAAACCCTTAATCAAAGCATTCAGCTAGTTTTCATTTTCTCGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAACCCTTAATCAAAGCATTCAGCTAGTTTTCATTTTCTCGTGTA  750

seq1  TTATTGCTACTTAGGGAAATTGCTCAACTGAACCCACCAGGCCATGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTACTTAGGGAAATTGCTCAACTGAACCCACCAGGCCATGTTTC  800

seq1  ACCTCCAGCTGTGACCTATGGTTAATTTTGTATTTAGAATTTAAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGCTGTGACCTATGGTTAATTTTGTATTTAGAATTTAAATAAAT  850

seq1  TTTTAGAATAGTATTATTCATGCCCAGTAGGAATACACTCCTGATCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATAGTATTATTCATGCCCAGTAGGAATACACTCCTGATCCAAT  900

seq1  G-AAGGGACCAATTTTCAATACACAAAATCGAGTTTTCCTAGTACCAATA  949
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGGGACCAATTTTCAATACACAAAATCGAGTTTTCCTAGTACC-ATA  949

seq1  AGGGAAATGAAAACAAATGTACTTACATCAAATCATCCTATTATATTTCG  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGAAATGAAAACAAATGTACTTACATCAAATCATCCTATTATATTTCG  998

seq1  TATATTTTGGTTTTAATGGATTAAGGGTAATGGCAAATTT  1039
      |||||||| ||||||   |||||| |||||||||||||||
seq2  TATATTTT-GTTTTA--TGATTAA-GGTAATGGCAAATTT  1034

seq1: chr15_32572807_32573692
seq2: B6Ng01-043A06.g_68_949 (reverse)

seq1  CCCTGAAGACATTTGTGTCTAATGAAGAACCTTCGGTCTTTGCTGAACTA  50
      |||||| |||||| |||||| |||||||| |||||||  |||||||||||
seq2  CCCTGAGGACATTGGTGTCTTATGAAGAA-CTTCGGTTCTTGCTGAACTA  49

seq1  ATTCATTTTCTCCTATTCTGCTATCTGTGTGGGCTCTGTTCTTGCACATA  100
      ||||||||  | ||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTT--TTCTATTCTGCTATCTGTGTGGGCTCTGTTCTTGCACATA  97

seq1  AAATTTTTCTGTAGAAATCCATGAGAGAATTGATCCTGTACCTACATTCT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATTTTTCTGTAGAAATCCATGAGAG-ATTGATCCTGTACCTACATTCT  146

seq1  AAACACTGTACAGGCCACAGAATTTGGAAAGCAGTACACAGCATCCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTACAGGCCACAGAATTTGGAAAGCAGTACACAGCATCCTTAT  196

seq1  TGTAAGTTGATGTCAATAATGACAATCATAGACAGATCATTCCACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTGATGTCAATAATGACAATCATAGACAGATCATTCCACAGAAA  246

seq1  GGCATATGAAAGGAAGTGAAATTTTGCCCTTGTGAAATTTCCAATTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGAAAGGAAGTGAAATTTTGCCCTTGTGAAATTTCCAATTTATG  296

seq1  TGATAGGTTTGATTGCCAATGCAAATACTGATGGTATTCCAAAACATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTTTGATTGCCAATGCAAATACTGATGGTATTCCAAAACATTAG  346

seq1  CGTTTGTTTATTGTTATGATATAGCACAGTGGTTATAGAAACACTAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTTATTGTTATGATATAGCACAGTGGTTATAGAAACACTAGCAT  396

seq1  ATTTGAAGGGCAGATTTTTGACACAGAGGGGAGGCCTACACCTCATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGGCAGATTTTTGACACAGAGGGGAGGCCTACACCTCATGTGT  446

seq1  GCATCTAAGTCATTCTCACTGGCCTCTGGATCACTGTATCCTCAAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAAGTCATTCTCACTGGCCTCTGGATCACTGTATCCTCAAGCATC  496

seq1  AAGTCATTGTCCGGAATGAATGCTTTGATGACTCAGGCATAAGGTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGTCCGGAATGAATGCTTTGATGACTCAGGCATAAGGTGTATA  546

seq1  CATATACATATACACATATTTATTACATGTGTAATAAATTGCATTGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATATACACATATTTATTACATGTGTAATAAATTGCATTGTATG  596

seq1  CATGCATGAAATTCTCAATTCCTTTTGTGGACGCTGGGGTACACATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGAAATTCTCAATTCCTTTTGTGGACGCTGGGGTACACATCTCC  646

seq1  AGCTGAAAGAATGACCATATCTAACAGTGTCCCTCCCTGGTGACTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGAATGACCATATCTAACAGTGTCCCTCCCTGGTGACTGAGCT  696

seq1  CTTTGAAGACCTTAGAATGTGATGTACCTAGACACTGGTATACGTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGACCTTAGAATGTGATGTACCTAGACACTGGTATACGTACACA  746

seq1  GGTGTCAGTTACAACCCAACTCCCAGCTAGTGAATCACTAGAGCTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGTTACAACCCAACTCCCAGCTAGTGAATCACTAGAGCTTCTTG  796

seq1  GCTCTTCTCTGCATGCCTCACAAGGCAAATGAGAGAGCTAGGTATATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTCTGCATGCCTCACAAGGCAAATGAGAGAGCTAGGTATATGCC  846

seq1  TAGAGCCCACCTACCCCAGATTTTGCTTCAGAATTC  886
      ||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCACCTACCCCAGATTTTGCTTCAGAATTC  882