BAC Information

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BAC

Clone NameB6Ng01-043I10
Chromosome15 (Build37)
Map Location 100,707,915 - 100,868,557
singlet/doubletdoublet
Overlap geneScn8a
Upstream geneLOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneEG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I10.bB6Ng01-043I10.g
ACCDH869561DH869562
length1,108413
definitionDH869561|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I10, 5' end.DH869562|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,867,439 - 100,868,557)(100,707,915 - 100,708,333)
sequence
gaattcaacaccctcttcgaacctctgtggataccagtcaaacatgtgat
acacacacacacacacacacacacacacacacacacacatatctccaggc
aaaacacatgaaaaaaaaaagccaggaaaggccctctccttgaatataca
tatgcaggcaaaacacgcacacagaaataagtcttttttgtttgtttgag
acagggtcttattatgtagccctggctgttctggaacttgctatgtagac
caggctggccttgaatttacagagatctgcctgcttctgtctccagagtc
ctgcgattaaagtgtgtgtagcattgtgctctgacattaagtcttaaaaa
aaaagcaagaaaagaaaggatggaaagaaggaaggaaggaaggaaggaag
gaaggaaggaaggcaggcaggcaggcaggcaggcaggcaggcagaagtgg
gaagtatgggaaccagtgtcacacgaggcatacttcagaaggtgagtata
ggcagtaactctcaaaagccaagtccttgtgcagactcacctcagacact
ctagcttagggactcttgggaaaatgccccaagactcagtgtcccatgta
ccaacatattttgtccttacagggtgatataggcaaaggggggtcgtctg
ccttgtattcataatcatcaacctcagaaaccagggtgcggccagctgtg
ctctggactagctccctgtgtggtggtggttgtcgtttttttaaacactc
ttttgtggtatcagaagtcagttacacctgcctggaaccaaagcacgtac
atagcactttgggatgccattccaggaggcaatggcgttccctgacgaga
gccaataggctcacacttctctcctgacctgtcagaatcccaacctgctg
gatttttaggttgaagaaaataggactttggggctagcctggctctgttt
ggggctagcctgagctctgcttcttttacctccagtaaacaacccacaca
gtgaagacataagacactcattggtgccctgtaagccctagtgagacact
tcacacagtgccgtctagtagcagtacctgtgaccctgccctagtttctg
ccacctca
tcagttggatttcctaggatttgctgtaaagagatgtgatcccttgttta
tagggaaagtgccttgagtgtgatagccatgctttaaacattggcattgt
tcggctagggtcaggggaacgttcagagtatgaggggttatcagagggcg
tgggggtccaacagacatgggagttggggtgtgactgtgagaaaggctca
taccttaagacaggtgtgcggtcttctgaagactcctggggagggggtcc
atctctgggctcatttctggatgacagtggttccgatctctgggacagag
ctcagaaccttgggaaggtgcagtctcacttgtttgtgttcagtcttgtt
ctgtctctgctacattgttttcttcacctgattgctgtgttgggaaaact
ggggggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100867439_100868557
seq2: B6Ng01-043I10.b_44_1151 (reverse)

seq1  TGAGGTGGCCAGTAACTGGGGCAGTGGTCACAGGTGCTGGCTACTGAGAC  50
      |||||||| ||| |||| |||||| |||||||||| || |||||| ||||
seq2  TGAGGTGG-CAGAAACTAGGGCAG-GGTCACAGGTACT-GCTACT-AGAC  46

seq1  GGCACTGTGTGAAAGTGTCTCACTGGGGCCTTACAGTGGCACCAGAATGG  100
      ||||||||||| |||||||||||| ||| ||||||| ||||||  ||| |
seq2  GGCACTGTGTG-AAGTGTCTCACTAGGG-CTTACAG-GGCACC--AAT-G  90

seq1  AGTTGTCTTATTGTCTTCACTGTGTGGGTTGTTTACCTGGGAGGTAAAAG  150
      || ||||||| |||||||||||||||||||||||||   |||||||||||
seq2  AG-TGTCTTA-TGTCTTCACTGTGTGGGTTGTTTAC--TGGAGGTAAAAG  136

seq1  AAGCAGAGCTCAGGCTAGCCCCAAACAGAGCCCAGGCTAGCCCCAAAGTT  200
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AAGCAGAGCTCAGGCTAGCCCCAAACAGAG-CCAGGCTAGCCCCAAAG-T  184

seq1  CCTATTTTCTTCAACCTAAAAATCCAGCAGGTTGGGATTCTGACAGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCTTCAACCTAAAAATCCAGCAGGTTGGGATTCTGACAGGTCA  234

seq1  GGAGAGAAGTGTGAGCCTATTGGCTCTCGTCAGGGAACGCCATTGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGTGTGAGCCTATTGGCTCTCGTCAGGGAACGCCATTGCCTCC  284

seq1  TGGAATGGCATCCC-AAGTGCTATGTACGTGCTTTGGTTCCAGGCAGGTG  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGAATGGCATCCCAAAGTGCTATGTACGTGCTTTGGTTCCAGGCAGGTG  334

seq1  TAACTGACTTCTGATACCACAAAAGAGTGTTTAAAAAAACGACAACCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACTTCTGATACCACAAAAGAGTGTTTAAAAAAACGACAACCACC  384

seq1  ACCACACAGGGAGCTAGTCCAGAGCACAGCTGGCCGCACCCTGGTTTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGGGAGCTAGTCCAGAGCACAGCTGGCCGCACCCTGGTTTCTG  434

seq1  AGGTTGATGATTATGAATACAAGGCAGACGACCCCCCTTTGCCTATATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGATTATGAATACAAGGCAGACGACCCCCCTTTGCCTATATCA  484

seq1  CCCTGTAAGGACAAAATATGTTGGTACATGGGACACTGAGTCTTGGGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAGGACAAAATATGTTGGTACATGGGACACTGAGTCTTGGGGCA  534

seq1  TTTTCCCAAGAGTCCCTAAGCTAGAGTGTCTGAGGTGAGTCTGCACAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAAGAGTCCCTAAGCTAGAGTGTCTGAGGTGAGTCTGCACAAGG  584

seq1  ACTTGGCTTTTGAGAGTTACTGCCTATACTCACCTTCTGAAGTATGCCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTTTTGAGAGTTACTGCCTATACTCACCTTCTGAAGTATGCCTC  634

seq1  GTGTGACACTGGTTCCCATACTTCCCACTTCTGCCTGCCTGCCTGCCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACTGGTTCCCATACTTCCCACTTCTGCCTGCCTGCCTGCCTGC  684

seq1  CTGCCTGCCTG----CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTT  745
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTT  734

seq1  TCCATCCTTTCTTTTCTTGCTTTTTTTTTAAGACTTAATGTCAGAGCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTTTCTTTTCTTGCTTTTTTTTTAAGACTTAATGTCAGAGCACA  784

seq1  ATGCTACACACACTTTAATCGCAGGACTCTGGAGACAGAAGCAGGCAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACACACACTTTAATCGCAGGACTCTGGAGACAGAAGCAGGCAGAT  834

seq1  CTCTGTAAATTCAAGGCCAGCCTGGTCTACATAGCAAGTTCCAGAACAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAATTCAAGGCCAGCCTGGTCTACATAGCAAGTTCCAGAACAGC  884

seq1  CAGGGCTACATAATAAGACCCTGTCTCAAACAAACAAAAAAGACTTATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACATAATAAGACCCTGTCTCAAACAAACAAAAAAGACTTATTT  934

seq1  CTGTGTGCGTGTTTTGCCTGCATATGTATATTCAAGGAGAGGGCCTTTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCGTGTTTTGCCTGCATATGTATATTCAAGGAGAGGGCCTTTCC  984

seq1  TGGCTTTTTTTTTTCATGTGTTTTGCCTGGAGATATGTGTGTGTGTGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTTTTTTCATGTGTTTTGCCTGGAGATATGTGTGTGTGTGTGT  1034

seq1  GTGTGTGTGTGTGTGTGTGTGTGTATCACATGTTTGACTGGTATCCACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTATCACATGTTTGACTGGTATCCACAG  1084

seq1  AGGTTCGAAGAGGGTGTTGAATTC  1119
      ||||||||||||||||||||||||
seq2  AGGTTCGAAGAGGGTGTTGAATTC  1108

seq1: chr15_100707915_100708333
seq2: B6Ng01-043I10.g_67_485

seq1  GAATTCTCAGTTGGATTTCCTAGGATTTGCTGTAAAGAGATGTGATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTGGATTTCCTAGGATTTGCTGTAAAGAGATGTGATCCCT  50

seq1  TGTTTATAGGGAAAGTGCCTTGAGTGTGATAGCCATGCTTTAAACATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGGGAAAGTGCCTTGAGTGTGATAGCCATGCTTTAAACATTGG  100

seq1  CATTGTTCGGCTAGGGTCAGGGGAACGTTCAGAGTATGAGGGGTTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCGGCTAGGGTCAGGGGAACGTTCAGAGTATGAGGGGTTATCAG  150

seq1  AGGGCGTGGGGGTCCAACAGACATGGGAGTTGGGGTGTGACTGTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGGGGGTCCAACAGACATGGGAGTTGGGGTGTGACTGTGAGAAA  200

seq1  GGCTCATACCTTAAGACAGGTGTGCGGTCTTCTGAAGACTCCTGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATACCTTAAGACAGGTGTGCGGTCTTCTGAAGACTCCTGGGGAGG  250

seq1  GGGTCCATCTCTGGGCTCATTTCTGGATGACAGTGGTTCCGATCTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATCTCTGGGCTCATTTCTGGATGACAGTGGTTCCGATCTCTGGG  300

seq1  ACAGAGCTCAGAACCTTGGGAAGGTGCAGTCTCACTTGTTTGTGTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCAGAACCTTGGGAAGGTGCAGTCTCACTTGTTTGTGTTCAGT  350

seq1  CTTGTTCTGTCTCTGCTACATTGTTTTCTTCACCTGATTGCTGTGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGTCTCTGCTACATTGTTTTCTTCACCTGATTGCTGTGTTGGG  400

seq1  AAAACTGGGGGGAGGGGGG  419
      |||||||||||||||||||
seq2  AAAACTGGGGGGAGGGGGG  419