BAC Information

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BAC

Clone NameB6Ng01-043J22
Chromosome15 (Build37)
Map Location 12,416,841 - 12,564,832
singlet/doubletdoublet
Overlap genePdzd2, LOC100040109
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J22.bB6Ng01-043J22.g
ACCDH869627DH869628
length419813
definitionDH869627|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J22, 5' end.DH869628|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,416,841 - 12,417,265)(12,564,005 - 12,564,832)
sequence
tgtgttcctgtagctcacaatggctttgaacccatgaaaatcttcctgcc
tcaggtccctaggtgctggagttataggtatgagtcaccagatctgactt
atttctcctcttaagagtttaaaatgacggactctactctcattgaagat
gtgatgtttaatgactgccaccctaacaaactcattcagaatatcatttt
aaaggcaagtgtggtgctggcacacacatttaaccctagcacttgggatg
tagagccagaagaaccaggagatcaagtctatcctcagctacagtggaag
tttgaggctagccctgagctacagtacactctgtctcagaaacaaacaac
aatcagccaaaccaattaataaagaagaatttcttgtaacagtgcggggg
tgggaaagggagggaggga
gaattcttatgtgtcctgggctggttggatatttggggtttgaggttgcc
ttcttcctctctttctctacctctgggtttcccacagctcattaggaatt
ccacaggaagctgagcagaggatctacaaactccacactgtgctttctgg
gcagaagatttaattgggagagggtattaacttaattggctatcatcagg
cttctggctgttttctgtattttaaggaactttttctcattttctcttct
atggtcagtagagcatgcctttaagagattaaatcgccttcttcagtgtc
tctgagtgcaaagagctctgggtttgaagtcagagcctggattctgatta
ggctctttctgggccgatcttttatattcactcacctttcccgacctcct
ttcctcaccgggtagaggagtagattaagttacatgaccacaaaagcccc
tcccagcgctctccacgggtgacttagatgtctcccacactaaatgacac
taaattctctgaggacatttggcaggtctcagaagtcaaatcaccgatgt
acacatgtgatacaacagaacaaccaagcttggatgggcaagggcttgtt
cagcaaaaaaccacagcatttatgttataaaagcgcagtgaagatgtgga
tgctgtgtgatgtgggggtatcttgctgaaaattacaggcagcaaagcaa
tgacaggcgggggtgcgctggctcactggggctgcccgtgtcagctttcc
aagcatgcctcagacaaccacgagcgtcagactacttcaggctggtctta
cgaagatgagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12416841_12417265
seq2: B6Ng01-043J22.b_47_471

seq1  GAATTCTGTGTTCCTGTAGCTCACAATGGCTTTGAACCCATGAAAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTCCTGTAGCTCACAATGGCTTTGAACCCATGAAAATCTT  50

seq1  CCTGCCTCAGGTCCCTAGGTGCTGGAGTTATAGGTATGAGTCACCAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAGGTCCCTAGGTGCTGGAGTTATAGGTATGAGTCACCAGATC  100

seq1  TGACTTATTTCTCCTCTTAAGAGTTTAAAATGACGGACTCTACTCTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATTTCTCCTCTTAAGAGTTTAAAATGACGGACTCTACTCTCATT  150

seq1  GAAGATGTGATGTTTAATGACTGCCACCCTAACAAACTCATTCAGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTGATGTTTAATGACTGCCACCCTAACAAACTCATTCAGAATAT  200

seq1  CATTTTAAAGGCAAGTGTGGTGCTGGCACACACATTTAACCCTAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAGGCAAGTGTGGTGCTGGCACACACATTTAACCCTAGCACTT  250

seq1  GGGATGTAGAGCCAGAAGAACCAGGAGATCAAGTCTATCCTCAGCTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGAGCCAGAAGAACCAGGAGATCAAGTCTATCCTCAGCTACAG  300

seq1  TGGAAGTTTGAGGCTAGCCCTGAGCTACAGTACACTCTGTCTCAGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTGAGGCTAGCCCTGAGCTACAGTACACTCTGTCTCAGAAACA  350

seq1  AACAACAATCAGCCAAACCAATTAATAAAGAAGAATTTCTTGTAACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATCAGCCAAACCAATTAATAAAGAAGAATTTCTTGTAACAGTG  400

seq1  CGGGGGTGGGAAAGGGAGGGAGGGA  425
      |||||||||||||||||||||||||
seq2  CGGGGGTGGGAAAGGGAGGGAGGGA  425

seq1: chr15_12564005_12564832
seq2: B6Ng01-043J22.g_69_881 (reverse)

seq1  CTACTCATCTTCTGTAAAGAACCAGGCCTGAAGTAGTTCTGAACGCTCGT  50
      |||||||||||| ||||   |||| ||||||||||| |||| ||||||||
seq2  CTACTCATCTTC-GTAA--GACCA-GCCTGAAGTAG-TCTG-ACGCTCGT  44

seq1  GGTTTGTCTGAGGGCATGCTTGGAAAGCTGACAACGGGCAGCCCCCAGTG  100
      || |||||||| |||||||||||||||||||| |||||||| ||||||||
seq2  GG-TTGTCTGA-GGCATGCTTGGAAAGCTGAC-ACGGGCAG-CCCCAGTG  90

seq1  AGCCAGCGCACCCCCGCCCTGTCATTGCTTCTGCTGCCTGTAATTTTCAG  150
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AGCCAGCGCACCCCCG-CCTGTCATTGCTT-TGCTGCCTGTAATTTTCAG  138

seq1  CAAGATACCCCCACATCACACAGCATCCACATCCTTCACTGCGCTTTTTA  200
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CAAGATACCCCCACATCACACAGCATCCACAT-CTTCACTGCGC-TTTTA  186

seq1  TAACATAAATGCTGTGGTTTTTTGCTGAACAAGCCCTTGCCCATCCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACATAAATGCTGTGGTTTTTTGCTGAACAAGCCCTTGCCCATCCAAG-  235

seq1  CTTGGTTGTTCTGTTGTATCACATGTGTACATCGGTGATTTGACTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGTTCTGTTGTATCACATGTGTACATCGGTGATTTGACTTCTGA  285

seq1  GACCTGCCAAATGTCCTCAGAGAATTTAGTGTCATTTAGTGTGGGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCAAATGTCCTCAGAGAATTTAGTGTCATTTAGTGTGGGAGACA  335

seq1  TCTAAGTCACCCGTGGAGAGCGCTGGGAGGGGCTTTTGTGGTCATGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCACCCGTGGAGAGCGCTGGGAGGGGCTTTTGTGGTCATGTAAC  385

seq1  TTAATCTACTCCTCTACCCGGTGAGGAAAGGAGGTCGGGAAAGGTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTACTCCTCTACCCGGTGAGGAAAGGAGGTCGGGAAAGGTGAGTG  435

seq1  AATATAAAAGATCGGCCCAGAAAGAGCCTAATCAGAATCCAGGCTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGATCGGCCCAGAAAGAGCCTAATCAGAATCCAGGCTCTGAC  485

seq1  TTCAAACCCAGAGCTCTTTGCACTCAGAGACACTGAAGAAGGCGATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCAGAGCTCTTTGCACTCAGAGACACTGAAGAAGGCGATTTAA  535

seq1  TCTCTTAAAGGCATGCTCTACTGACCATAGAAGAGAAAATGAGAAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAAGGCATGCTCTACTGACCATAGAAGAGAAAATGAGAAAAAGT  585

seq1  TCCTTAAAATACAGAAAACAGCCAGAAGCCTGATGATAGCCAATTAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAATACAGAAAACAGCCAGAAGCCTGATGATAGCCAATTAAGTT  635

seq1  AATACCCTCTCCCAATTAAATCTTCTGCCCAGAAAGCACAGTGTGGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTCTCCCAATTAAATCTTCTGCCCAGAAAGCACAGTGTGGAGTT  685

seq1  TGTAGATCCTCTGCTCAGCTTCCTGTGGAATTCCTAATGAGCTGTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCCTCTGCTCAGCTTCCTGTGGAATTCCTAATGAGCTGTGGGAA  735

seq1  ACCCAGAGGTAGAGAAAGAGAGGAAGAAGGCAACCTCAAACCCCAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGGTAGAGAAAGAGAGGAAGAAGGCAACCTCAAACCCCAAATAT  785

seq1  CCAACCAGCCCAGGACACATAAGAATTC  828
      ||||||||||||||||||||||||||||
seq2  CCAACCAGCCCAGGACACATAAGAATTC  813