BAC Information

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BAC

Clone NameB6Ng01-043O04
Chromosome15 (Build37)
Map Location 21,510,573 - 21,619,944
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043O04.bB6Ng01-043O04.g
ACCDH869807DH869808
length1,195586
definitionDH869807|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O04, 5' end.DH869808|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,510,573 - 21,511,781)(21,619,359 - 21,619,944)
sequence
gaattcaaaatcaatattcaagaacagaaaatgtaatttgaaaatctcca
cataattttctgtgcttctttactcattatatattatattttaaaaatat
gttcaacggtatccaccagctagattgtgcagcatgtacaatttctttcc
cctctccatgaaatattgttggtgggtgactgaactgatggaatttcaca
tttaatcacatgtggtatatgaaacccttaggaacactctggtattcatg
cgagtcatccatacatgaatgaagtaagttttaaccaatctcattagctg
gttctggtaaaatctgctaaactatttttgttgttaaataaacacttatg
acagcaaaaaaaatatgttcagttgattgaaacactttaagtatggaatt
gatgtttcatgtgccacccttttacataatacaaagaacaagaaattttt
aatactcaatcattattaataaattagaaactattgagctatatgaaata
aaatcactctaactctccaagaagtctatattttctatctctcttgtttt
aatgattgccacttaatttatgacctgtgaccacagaaggctccttttac
tcaatctaatgaagtgagtcattggttttgaatatcttgatggctgtcat
gagctcaaatatttacctccacttaatctatttatggagatcactaatgg
tgattctttgttgatattttccattatctgaaaaatgtcactagaatgaa
aataaagaaaatttacaaaggaaaccttaactgttaagtcaaagcattcc
cacaagggcacttcctacagcaattagtttagggaagcttgttaagtaaa
cattatatatttgatttaaaattaatatattggattgtgagtggaatagt
aacatatatctaccacagctttattttaataattagtattctttttaagt
tgtttacctgcttcccatagtgttatgaagtttatactaaaagcatattt
taaaaggattgtttaaagtttggagctgcaacaaaaggatggaccattct
agaagactgcctatctagggatccaccccataatcagcttccaaatgctg
acaccactgcataactagcagaattttgctgaaagaccgaatagctgtct
cttgtgagactagcaggcctagcaaacatattgatgctcaaagtc
gaattcttcatgttgcatttgacttcattttgaaagaaaaagacactttt
ctaagcccaattgcaagatgcaaattaatagaaatatcagaagaaaaaag
agatttatttactgtaaataaataaattccactttgtcccgcactttgga
atggaggacaaagatatcccagtgatccttatacgttcttcttcagggtc
cagacatgaaggtatgatgtgcttcaaatagataataaaaagacatatac
atatctaagccatctggtcaaggtgtggttctccgatctccacggtatca
tctctaaattctcaagtcaggttggcaactcatgcaatgtaacctgacac
taaatataaatatatttcccagaaaaaaagtcctcctgtgctttcaacca
tttttctctcaatctgggaaatttttttgataattctaattttttattgt
ttcattctttcgtagtctgatactcaaaagggaaagaataaatgtctcat
tagaatatattcattgctggcagataggctggttttatacacatacatat
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21510573_21511781
seq2: B6Ng01-043O04.b_41_1235

seq1  GAATTCAAAATCAATATTCAAGAACAGAAAATGTAATTTGAAAATCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCAATATTCAAGAACAGAAAATGTAATTTGAAAATCTCCA  50

seq1  CATAATTTTCTGTGCTTCTTTACTCATTATATATTATATTTTAAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTCTGTGCTTCTTTACTCATTATATATTATATTTTAAAAATAT  100

seq1  GTTCAACGGTATCCACCAGCTAGATTGTGCAGCATGTACAATTTCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACGGTATCCACCAGCTAGATTGTGCAGCATGTACAATTTCTTTCC  150

seq1  CCTCTCCATGAAATATTGTTGGTGGGTGACTGAACTGATGGAATTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCATGAAATATTGTTGGTGGGTGACTGAACTGATGGAATTTCACA  200

seq1  TTTAATCACATGTGGTATATGAAACCCTTAGGAACACTCTGGTATTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCACATGTGGTATATGAAACCCTTAGGAACACTCTGGTATTCATG  250

seq1  CGAGTCATCCATACATGAATGAAGTAAGTTTTAACCAATCTCATTAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCATCCATACATGAATGAAGTAAGTTTTAACCAATCTCATTAGCTG  300

seq1  GTTCTGGTAAAATCTGCTAAACTATTTTTGTTGTTAAATAAACACTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTAAAATCTGCTAAACTATTTTTGTTGTTAAATAAACACTTATG  350

seq1  ACAGCAAAAAAAATATGTTCAGTTGATTGAAACACTTTAAGTATGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAAAAAATATGTTCAGTTGATTGAAACACTTTAAGTATGGAATT  400

seq1  GATGTTTCATGTGCCACCCTTTTACATAATACAAAGAACAAGAAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCATGTGCCACCCTTTTACATAATACAAAGAACAAGAAATTTTT  450

seq1  AATACTCAATCATTATTAATAAATTAGAAACTATTGAGCTATATGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAATCATTATTAATAAATTAGAAACTATTGAGCTATATGAAATA  500

seq1  AAATCACTCTAACTCTCCAAGAAGTCTATATTTTCTATCTCTCTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCTAACTCTCCAAGAAGTCTATATTTTCTATCTCTCTTGTTTT  550

seq1  AATGATTGCCACTTAATTTATGACCTGTGACCACAGAAGGCTCCTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGCCACTTAATTTATGACCTGTGACCACAGAAGGCTCCTTTTAC  600

seq1  TCAATCTAATGAAGTGAGTCATTGGTTTTGAATATCTTGATGGCTGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAATGAAGTGAGTCATTGGTTTTGAATATCTTGATGGCTGTCAT  650

seq1  GAGCTCAAATATTTACCTCCACTTAATCTATTTATGGAGATCACTAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAATATTTACCTCCACTTAATCTATTTATGGAGATCACTAATGG  700

seq1  TGATTCTTTGTTGATATTTTCCATTATCTGAAAAATGTCACTAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTGTTGATATTTTCCATTATCTGAAAAATGTCACTAGAATGAA  750

seq1  AATAAAGAAAATTTACAAAGGAAACCTTAACTGTTAAGTCAAAGCATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAATTTACAAAGGAAACCTTAACTGTTAAGTCAAAGCATTCC  800

seq1  CACAAGGGCACTTCCTACAGCAATTAGTTTAGGGAAGCTTGTTAAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGCACTTCCTACAGCAATTAGTTTAGGGAAGCTTGTTAAGTAAA  850

seq1  CATTATATATTTGATTTAAAATTAATATATTGGATTGTGAGTGGAATAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATATTTGATTTAAAATTAATATATTGGATTGTGAGTGGAATAGT  900

seq1  AACATATATCTACCACAGCTTTATTTTAATAATTAGTATTCTTTTTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATCTACCACAGCTTTATTTTAATAATTAGTATTCTTTTTAAGT  950

seq1  TGTTTACCTGCTTCCCAATAGTGTTATGAAGTTTATACTAAAAGCAATAT  1000
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TGTTTACCTGCTTCCC-ATAGTGTTATGAAGTTTATACTAAAAGC-ATAT  998

seq1  TTTAAAAAGGATTGTTTAAAGTTTGGAGCTGCAACAAAAGGATGGACCA-  1049
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTT-AAAAGGATTGTTTAAAGTTTGGAGCTGCAACAAAAGGATGGACCAT  1047

seq1  TCTAG-AGACTGCCTTATCTAGGGATCCACCCCATAATCAGCTTCCAAAT  1098
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGACTGCC-TATCTAGGGATCCACCCCATAATCAGCTTCCAAAT  1096

seq1  GCTGACACCACTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATA  1148
      ||||||||||||||||| |||||||  |||||||||||| |||| |   |
seq2  GCTGACACCACTGCATA-ACTAGCAGAATTTTGCTGAAA-GACCGA---A  1141

seq1  TAGCTGTCTCTTGTGAGACTAGGCAGGGGCCTAGCAAACACATAAGTGGA  1198
      ||||||||||||||||||||| |||  ||||||||||||| |    | ||
seq2  TAGCTGTCTCTTGTGAGACTA-GCA--GGCCTAGCAAACATA----TTGA  1184

seq1  TGCTCACAGTC  1209
      |||||| ||||
seq2  TGCTCAAAGTC  1195

seq1: chr15_21619359_21619944
seq2: B6Ng01-043O04.g_68_653 (reverse)

seq1  ACACACACACACACACACACACACACACACACACAAATATGTATGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAAATATGTATGTGTAT  50

seq1  AAAACCAGCCTATCTGCCAGCAATGAATATATTCTAATGAGACATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGCCTATCTGCCAGCAATGAATATATTCTAATGAGACATTTATT  100

seq1  CTTTCCCTTTTGAGTATCAGACTACGAAAGAATGAAACAATAAAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTTGAGTATCAGACTACGAAAGAATGAAACAATAAAAAATTA  150

seq1  GAATTATCAAAAAAATTTCCCAGATTGAGAGAAAAATGGTTGAAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCAAAAAAATTTCCCAGATTGAGAGAAAAATGGTTGAAAGCACA  200

seq1  GGAGGACTTTTTTTCTGGGAAATATATTTATATTTAGTGTCAGGTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTTTTTTTCTGGGAAATATATTTATATTTAGTGTCAGGTTACAT  250

seq1  TGCATGAGTTGCCAACCTGACTTGAGAATTTAGAGATGATACCGTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGTTGCCAACCTGACTTGAGAATTTAGAGATGATACCGTGGAGA  300

seq1  TCGGAGAACCACACCTTGACCAGATGGCTTAGATATGTATATGTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAACCACACCTTGACCAGATGGCTTAGATATGTATATGTCTTTTT  350

seq1  ATTATCTATTTGAAGCACATCATACCTTCATGTCTGGACCCTGAAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATTTGAAGCACATCATACCTTCATGTCTGGACCCTGAAGAAGA  400

seq1  ACGTATAAGGATCACTGGGATATCTTTGTCCTCCATTCCAAAGTGCGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATAAGGATCACTGGGATATCTTTGTCCTCCATTCCAAAGTGCGGGA  450

seq1  CAAAGTGGAATTTATTTATTTACAGTAAATAAATCTCTTTTTTCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGAATTTATTTATTTACAGTAAATAAATCTCTTTTTTCTTCTGA  500

seq1  TATTTCTATTAATTTGCATCTTGCAATTGGGCTTAGAAAAGTGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTAATTTGCATCTTGCAATTGGGCTTAGAAAAGTGTCTTTTT  550

seq1  CTTTCAAAATGAAGTCAAATGCAACATGAAGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAATGAAGTCAAATGCAACATGAAGAATTC  586