BAC Information

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BAC

Clone NameB6Ng01-044A17
Chromosome15 (Build37)
Map Location 52,581,330 - 52,729,409
singlet/doubletdoublet
Overlap genenone
Upstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
Downstream geneLOC100039745, Ext1, Samd12, EG665097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A17.bB6Ng01-044A17.g
ACCDH869914DH869915
length1,1041,181
definitionDH869914|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A17, 5' end.DH869915|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,728,296 - 52,729,409)(52,581,330 - 52,582,535)
sequence
gaattctaacttccatgtccaagtgtcattttgctctctttgtgtgcttg
tgtgtttatggtgtatgtttgtatgtggggtatacatgaacatgtgtgtg
cgttcattagggaggtcaaagttgatatgaggaatcttcctagattactc
ttcagcttgttcattcattctggagctctcaattgaacccaaaacatgtt
cctcatattaccccagggatgccctctctctatcttctgagtgttgggat
ttcaggttagctgtcccacccatccagaatttatgagagttttcctggcc
caaacctgttccttatattgaagtgcaagggctttatttactgatccatc
ttcctagcactttaagtttcatgcttattttatgaatagttttcctcctc
tgtgctgttttttaactcataggagatgtggcttaagcaagaagagttat
aactgtattctattgtaaatgttatttttttccctggtctgattctgcaa
tttctttgatattggtcactttatttggtccttcatgctaatcttttttt
acccttccacttcacctcaggactgatgattgcttcttctcagtatttcc
tttgccagttaactagctatgtggtcgtcaggatactagttacatcctct
tgaacaatctaacctggcattttcccatgctcagaaggatgagcgcgacg
ccagcattgttacgagatgttggagactacaaattaagagttcattgtgt
ctgagaggtccagaatcgggcttaagatgaatgaactcatcatctttcca
gggaagtaaatctacttggcgagtttccattaaaatagattttgaaaatg
tcagatggaactaaagcatttaagacatatggtgcattaactaaatgtta
aacatttgcctttagctgcacgaacatatcattgatgagacgagtcagtg
agctatgctggacatccttttgcagaataaccgtcagtagagagctctat
ttctcaaacggttgtaatgaaacaatccccagatgcttaacaacgacact
aattgtgtttaatttcaccgctgatgaaatgcacataaaatgaagtgtaa
atga
gaattccttgtgaaaaggactttttgaccagatcacagaatggagcatca
ccatctcaaaagagagctaacattatcttccttcatatttcccacagaga
gcctttgtgctttcttcctttctgtctattttcatctttcataacaatag
ctttgctcaaaaaacatcagacttttcaccacgagagcatccaaacatcg
accaaacaaagcaaagcatagattgaaacttcactctgtggggcttgcta
ggtagaaatttgggggaaccagcatagttagcaacgctctcaccaaccaa
gtttgttgactgtggtagcagaggttgtggttactgaaaacaggaagttg
ccttaggaaggaaggttttgggtctttcagtgggcacactcttcacaact
ctatggatggctggtgttggcatacaagccatgggtgcatcttcaaaggt
gtatgaagcagtctgaatgtcagcatgaagggaatattttctgtgcatca
ccagcactgaatacaaacttattggctgagtgtctaaggaaaggttacat
gagattttcaacatatcatgtatcatgtatgtttatagtctttaccttac
ctcatctttaacaaaatattattatgaagtaggtttcaccaaaactctca
ttttacaaatgaggaacctgagtcaaataatttgccctttgaactttctt
agtgataaattatagaacagagattcacattcaggccacatttgttactg
taaagcttttgtacacaaagactgcagtctactcttgaagaagtgcccct
acttgactaggtacaaaacagaattgtctagaaagaaaatatggagcctc
ttcctcaatcagttagcattatcctcgtgaaaactatttttcaagcaaca
ttttagtcctcaattttgtgacatgtcacaatcacagggtgtcattatgt
ggccatttttactaaataaagagttctcaatcttaaagttgtactgtact
ctaagaaaaggcagtcagagtaattggagttagtgtcaattctatccctt
taagaattcccaacaggaatgggcagttctcatcttgtgaaagggagaga
ggacctgagggtgtttactagcacttcgaagcggattttaagcacttctt
ctctcttgatgaagatgatgcttcaactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52728296_52729409
seq2: B6Ng01-044A17.b_42_1145 (reverse)

seq1  TCATTTACACCTCTCATTTTTATGTGCATTTTCATTCAGCGGTGAAATTA  50
      |||||||||| ||    ||||||||||| ||||| |||||||||||||||
seq2  TCATTTACACTTC---ATTTTATGTGCA-TTTCA-TCAGCGGTGAAATTA  45

seq1  TAACACATATTTGGTGTCTGTTG-TAAGCATCTGGGGATGGTTTCTATTA  99
       |||||  | || ||||| |||| ||||||||||||||| ||||| ||||
seq2  -AACAC--AATTAGTGTC-GTTGTTAAGCATCTGGGGATTGTTTC-ATTA  90

seq1  CAACGTTTGGAGAAATAGAGCTCTCTACTGGACGGTGATTCTGCAAAA-G  148
      ||||  || |||||||||||||||||||| |||||| ||||||||||| |
seq2  CAACCGTTTGAGAAATAGAGCTCTCTACT-GACGGTTATTCTGCAAAAGG  139

seq1  ATGTTCAGCATAGCTCACTGAACTCGTCTCATCAATGATATGTTCGTGCA  198
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTCCAGCATAGCTCACTG-ACTCGTCTCATCAATGATATGTTCGTGCA  188

seq1  GCTAAAGGCAAATGTTTAAACATTTAGTTAATGCACCATATGTCTTAAAT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTAAAGGCAAATGTTT-AACATTTAGTTAATGCACCATATGTCTTAAAT  237

seq1  GCTTTAGTTCCATCTGACATTTTCAAAATCTATTTTAATGGAAACTCGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGTTCCATCTGACATTTTCAAAATCTATTTTAATGGAAACTCGCC  287

seq1  AAGTAGATTTACTTCCCTGG-AAGATGATGAGTTCATTCATCTTAAGCCC  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTAGATTTACTTCCCTGGAAAGATGATGAGTTCATTCATCTTAAGCCC  337

seq1  GATTCTGGACCTCTCAGACACAATGAACTCTTAATTTGTAGTCTCCAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGACCTCTCAGACACAATGAACTCTTAATTTGTAGTCTCCAACA  387

seq1  TCTCGTAACAATGCTGGCGTCGCGCTCATCCTTCTGAGCATGGGAAAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTAACAATGCTGGCGTCGCGCTCATCCTTCTGAGCATGGGAAAATG  437

seq1  CCAGGTTAGATTGTTCAAGAGGATGTAACTAGTATCCTGACGACCACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGATTGTTCAAGAGGATGTAACTAGTATCCTGACGACCACATA  487

seq1  GCTAGTTAACTGGCAAAGGAAATACTGAGAAGAAGCAATCATCAGTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAACTGGCAAAGGAAATACTGAGAAGAAGCAATCATCAGTCCTG  537

seq1  AGGTGAAGTGGAAGGGTAAAAAAAGATTAGCATGAAGGACCAAATAAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGTGGAAGGGTAAAAAAAGATTAGCATGAAGGACCAAATAAAGT  587

seq1  GACCAATATCAAAGAAATTGCAGAATCAGACCAGGGAAAAAAATAACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATATCAAAGAAATTGCAGAATCAGACCAGGGAAAAAAATAACATT  637

seq1  TACAATAGAATACAGTTATAACTCTTCTTGCTTAAGCCACATCTCCTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGAATACAGTTATAACTCTTCTTGCTTAAGCCACATCTCCTATG  687

seq1  AGTTAAAAAACAGCACAGAGGAGGAAAACTATTCATAAAATAAGCATGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAACAGCACAGAGGAGGAAAACTATTCATAAAATAAGCATGAA  737

seq1  ACTTAAAGTGCTAGGAAGATGGATCAGTAAATAAAGCCCTTGCACTTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTGCTAGGAAGATGGATCAGTAAATAAAGCCCTTGCACTTCAA  787

seq1  TATAAGGAACAGGTTTGGGCCAGGAAAACTCTCATAAATTCTGGATGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAACAGGTTTGGGCCAGGAAAACTCTCATAAATTCTGGATGGGT  837

seq1  GGGACAGCTAACCTGAAATCCCAACACTCAGAAGATAGAGAGAGGGCATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCTAACCTGAAATCCCAACACTCAGAAGATAGAGAGAGGGCATC  887

seq1  CCTGGGGTAATATGAGGAACATGTTTTGGGTTCAATTGAGAGCTCCAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTAATATGAGGAACATGTTTTGGGTTCAATTGAGAGCTCCAGAA  937

seq1  TGAATGAACAAGCTGAAGAGTAATCTAGGAAGATTCCTCATATCAACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACAAGCTGAAGAGTAATCTAGGAAGATTCCTCATATCAACTTT  987

seq1  GACCTCCCTAATGAACGCACACACATGTTCATGTATACCCCACATACAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCCTAATGAACGCACACACATGTTCATGTATACCCCACATACAAA  1037

seq1  CATACACCATAAACACACAAGCACACAAAGAGAGCAAAATGACACTTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCATAAACACACAAGCACACAAAGAGAGCAAAATGACACTTGGA  1087

seq1  CATGGAAGTTAGAATTC  1114
      |||||||||||||||||
seq2  CATGGAAGTTAGAATTC  1104

seq1: chr15_52581330_52582535
seq2: B6Ng01-044A17.g_66_1246

seq1  GAATTCCTTGTGAAAAGGACTTTTTGACCAGATCACAGAATGGAGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTGAAAAGGACTTTTTGACCAGATCACAGAATGGAGCATCA  50

seq1  CCATCTCAAAAGAGAGCTAACATTATCTTCCTTCATATTTCCCACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAAAAGAGAGCTAACATTATCTTCCTTCATATTTCCCACAGAGA  100

seq1  GCCTTTGTGCTTTCTTCCTTTCTGTCTATTTTCATCTTTCATAACAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTGCTTTCTTCCTTTCTGTCTATTTTCATCTTTCATAACAATAG  150

seq1  CTTTGCTCAAAAAACATCAGACTTTTCACCACGAGAGCATCCAAACATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCAAAAAACATCAGACTTTTCACCACGAGAGCATCCAAACATCG  200

seq1  ACCAAACAAAGCAAAGCATAGATTGAAACTTCACTCTGTGGGGCTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAGCAAAGCATAGATTGAAACTTCACTCTGTGGGGCTTGCTA  250

seq1  GGTAGAAATTTGGGGGAACCAGCATAGTTAGCAACGCTCTCACCAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATTTGGGGGAACCAGCATAGTTAGCAACGCTCTCACCAACCAA  300

seq1  GTTTGTTGACTGTGGTAGCAGAGGTTGTGGTTACTGAAAACAGGAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGACTGTGGTAGCAGAGGTTGTGGTTACTGAAAACAGGAAGTTG  350

seq1  CCTTAGGAAGGAAGGTTTTGGGTCTTTCAGTGGGCACACTCTTCACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGAAGGAAGGTTTTGGGTCTTTCAGTGGGCACACTCTTCACAACT  400

seq1  CTATGGATGGCTGGTGTTGGCATACAAGCCATGGGTGCATCTTCAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATGGCTGGTGTTGGCATACAAGCCATGGGTGCATCTTCAAAGGT  450

seq1  GTATGAAGCAGTCTGAATGTCAGCATGAAGGGAATATTTTCTGTGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGCAGTCTGAATGTCAGCATGAAGGGAATATTTTCTGTGCATCA  500

seq1  CCAGCACTGAATACAAACTTATTGGCTGAGTGTCTAAGGAAAGGTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGAATACAAACTTATTGGCTGAGTGTCTAAGGAAAGGTTACAT  550

seq1  GAGATTTTCAACATATCATGTATCATGTATGTTTATAGTCTTTACCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCAACATATCATGTATCATGTATGTTTATAGTCTTTACCTTAC  600

seq1  CTCATCTTTAACAAAATATTATTATGAAGTAGGTTTCACCAAAACTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTTAACAAAATATTATTATGAAGTAGGTTTCACCAAAACTCTCA  650

seq1  TTTTACAAATGAGGAACCTGAGTCAAATAATTTGCCCTTTGAACTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAATGAGGAACCTGAGTCAAATAATTTGCCCTTTGAACTTTCTT  700

seq1  AGTGATAAATTATAGAACAGAGATTCACATTCAGGCCACATTTGTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAATTATAGAACAGAGATTCACATTCAGGCCACATTTGTTACTG  750

seq1  TAAAGCTTTTGTACACAAAGACTGCAGTCTACTCTTGAAGAAGTGCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTTGTACACAAAGACTGCAGTCTACTCTTGAAGAAGTGCCCCT  800

seq1  ACTTGACTAGGTACAAAACAGAATTGTCTAGAAAGAAAATATGGAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTAGGTACAAAACAGAATTGTCTAGAAAGAAAATATGGAGCCTC  850

seq1  TTCCTCAATCAGTTAGCATTATCCTCGTGAAAACTATTTTTCAAGCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAATCAGTTAGCATTATCCTCGTGAAAACTATTTTTCAAGCAACA  900

seq1  TTTTAGTCCTCAATTTTGTGACATGTCACAATCACAGGGTGTCATTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCTCAATTTTGTGACATGTCACAATCACAGGGTGTCATTATGT  950

seq1  GGCCAATTTTTACTAAATAAAGAGTTCTCAAATCTTAAAG-TGTACTGTA  999
      |||| |||||||||||||||||||||||| |||||||||| |||||||||
seq2  GGCC-ATTTTTACTAAATAAAGAGTTCTC-AATCTTAAAGTTGTACTGTA  998

seq1  CTCTAAAGAAAAAGGCAGTCAGAGTAATTGGAGTTAAGTTGTCAATTCTA  1049
      ||||||   |||||||||||||||||||||||||||   |||||||||||
seq2  CTCTAA--GAAAAGGCAGTCAGAGTAATTGGAGTTA--GTGTCAATTCTA  1044

seq1  TCCCCTTAAGAATTTCCCAACAAGGAATGGCCAGTTCTCCATCTTGTGGA  1099
      |||| ||||||| |||||||| |||||||| ||||||| |||||||||  
seq2  TCCCTTTAAGAA-TTCCCAAC-AGGAATGGGCAGTTCT-CATCTTGTG--  1089

seq1  AAAGGGAGAGA-GACCTGAGGGTGTTTTACCTAGCACTTCAGAAGCAGAA  1148
      ||||||||||| |||||||||||||||   |||||||||| ||||| | |
seq2  AAAGGGAGAGAGGACCTGAGGGTGTTT--ACTAGCACTTC-GAAGC-GGA  1135

seq1  TTTTAGGCACTTCCTTCCTCTCTGGAATTGGAAAAGATGATGCCTTTCAA  1198
      ||||| |||||||  | |||||| ||  ||   ||||||||||  |||||
seq2  TTTTAAGCACTTC--TTCTCTCTTGA--TG---AAGATGATGC--TTCAA  1176

seq1  AACCTACT  1206
         |||||
seq2  ---CTACT  1181