BAC Information

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BAC

Clone NameB6Ng01-044O08
Chromosome15 (Build37)
Map Location 17,190,953 - 17,192,091
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O08.bB6Ng01-044O08.g
ACCDH870517DH870518
length1,1321,232
definitionDH870517|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O08, 5' end.DH870518|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaacctgcctcatatggcatataattaaagaaattagaaaac
aaactatatgatctattaaatacattgcagaagaatatattatagttgat
aattgtatcaatgtggaaccaaaatatatgttaaaaatataattatacag
taaatgtaagataaaatgtataattaaattaatcctcagagcaacaaatt
agctctgagaaattattggcgtggataaatgggctttcagtatcattaga
tctaactattctcagttattctttgttaaagtgaacgatccactgatttc
taattccttccttttggatgccaaaacttaggggtggaaataaagatatt
tgccaagtgctatatttataaaatatgctacacattattcatcatgtcaa
aataaggaaatgtttttgtaagattttgatattatgaaaaccgttagtaa
ttttttttatttgtataactttttactatcaaattgcaaatacccggtaa
aggggaggaacaataaagctgtcttgtgatattcaagtaagttcaattgc
aataattatatttagcaaatgtatttgctaatgttatgcttacaaagctt
cttcaaatacttttttattacaaaattaattggcttaaagccagtatatg
tctagtttgatgtacaattacccaatgtaaacttacactgattgatttcc
agattatgaatttaatatatttttctctaaactacttagaaacttatttc
aatacacatacatacacaaagtatgcatgtatataacttttatctaaaca
tatgaatgccatgccacttgttaaattcgtatcaatgcgggttttctcca
tcatgttgtctttcacattgggtttctgatttctacatgttgcaattgtg
tggggatgttttacattatgattcatttctaccttttccccagaggatta
gttgttgctctcagagaagtaccggctcagaaacattgtctccttgccat
ggagaattgttgtaaagcacacaatgttggatctccccagatgctcttga
caattctgcccctaccaaagtcagagtcaataagactgtcacagctcagt
aaagcttcttatacatgtaagctactggatct
gaattcaataaatatgaatataaagctcttccaaagttatgaatcacaat
atagggtggaaagaggaaagtttatagctgggagtgcctacattaataca
aaaaaatggagatgtcttacagtagcaggttaacaacacaagtataagat
cttgaagaaaagaagtatgcatgcccaaagattagtacagttcaagatat
aaaaaacctgaagatgaaatgaaagtctcattgaagcaaagagttggttc
cttgagaaatcaacatagacaaacccttatcaaaactaactaaaaggcaa
aggaagaatatccaaatgaacaaattcagaaataaaagttgggaatgaaa
gcagaagagatacggaggaaatccagagatttataaggaccgactttaaa
aaatctgtacttcacaatattggaaaatctaaaacaaatggataattttc
tcatgggtaccaattatcaaagttaaatcaattaaatagtttaaatagac
ctataaaccctacgtaaatagaagtagtcgataaaatgttcttcaaaaac
aacaaaaaacccagggccaaactgtttcagagcagaattggaccacatat
tcaatgaagagtgaacatcattattcctaaaaataattccacaaaaaaat
ttagaagtaaacaaaaaagaaaaaatgaacgaattaattttattaggcca
tagtaactccataataccaaaaccacatgagattcaacatagaatgagaa
ttacaaattcctttcccttatgaacatagatgcaaaaatattcaatataa
atcctgcaaaccaaatccaagagcccatcaaactgatcaataccatgctc
aagttggcatcattccacaaatgcagggatggtttaataaatgaaaataa
gtaagtataatttatcatgtaaataaattgaaagaaaaataaacatacta
cctggtcaagcatttgactctttatgataaaagtcctggagagattaggg
tacaagccacatacctaaacatccatttttttttaatcagaaaatattct
ctttgttgaataggagattcttgcatatctatcatgacttcagttattgt
tccatggtattctgcatgcaatggagggcaatctctgatcttctgcattc
tttctggattttccaattaatgctagttgtgaattaattttacaagaagc
tctttgatcctaatgagagaacacgctatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17190953_17192091
seq2: B6Ng01-044O08.b_46_1177 (reverse)

seq1  AGATCCAGTAGCCTACATGTATGAGAAAGCCTTTAACCTGAGCTGTTGAC  50
      |||||||||||| ||||||||| ||||   |||||  |||||||| ||||
seq2  AGATCCAGTAGCTTACATGTATAAGAA--GCTTTA--CTGAGCTG-TGAC  45

seq1  AAGTC-TATTGACTCTGACTTTGTTTAGGGGCAGAATTGTCAAGAGCATT  99
       |||| |||||||||||||||||  ||||||||||||||||||||||| |
seq2  -AGTCTTATTGACTCTGACTTTG-GTAGGGGCAGAATTGTCAAGAGCA-T  92

seq1  CTGGGGAGATCCAACATTGTTGTGCTTTAC-ACAA-TCTCCATGGCAAGG  147
      ||||||||||||||||||| |||||||||| |||| ||||||||||||||
seq2  CTGGGGAGATCCAACATTG-TGTGCTTTACAACAATTCTCCATGGCAAGG  141

seq1  AGACAATGTTTCTGAGCCGGTTACTTCTCTGAGAGCAACAACTAATCCTC  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGACAATGTTTCTGAGCCGG-TACTTCTCTGAGAGCAACAACTAATCCTC  190

seq1  TGGGGAAAAGGTAGAAATGAATCATAATGTAAAACATCCCCACACAATTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAGGTAGAAATGAATCATAATGTAAAACATCCCCACACAATTG  240

seq1  CAACATGTAGAAATCAGAAACCCAATGTGAAAGACAACATGATGGAGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTAGAAATCAGAAACCCAATGTGAAAGACAACATGATGGAGAAA  290

seq1  ACCCGCATTGATACGAATTTAACAAGTGGCATGGCATTCATATGTTTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCATTGATACGAATTTAACAAGTGGCATGGCATTCATATGTTTAGA  340

seq1  TAAAAGTTATATACATGCATACTTTGTGTATGTATGTGTATTGAAATAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTATATACATGCATACTTTGTGTATGTATGTGTATTGAAATAAG  390

seq1  TTTCTAAGTAGTTTAGAGAAAAATATATTAAATTCATAATCTGGAAATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTAGTTTAGAGAAAAATATATTAAATTCATAATCTGGAAATCA  440

seq1  ATCAGTGTAAGTTTACATTGGGTAATTGTACATCAAACTAGACATATACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTAAGTTTACATTGGGTAATTGTACATCAAACTAGACATATACT  490

seq1  GGCTTTAAGCCAATTAATTTTGTAATAAAAAAGTATTTGAAGAAGCTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAAGCCAATTAATTTTGTAATAAAAAAGTATTTGAAGAAGCTTTG  540

seq1  TAAGCATAACATTAGCAAATACATTTGCTAAATATAATTATTGCAATTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAACATTAGCAAATACATTTGCTAAATATAATTATTGCAATTGA  590

seq1  ACTTACTTGAATATCACAAGACAGCTTTATTGTTCCTCCCCTTTACCGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTGAATATCACAAGACAGCTTTATTGTTCCTCCCCTTTACCGGG  640

seq1  TATTTGCAATTTGATAGTAAAAAGTTATACAAATAAAAAAAATTACTAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAATTTGATAGTAAAAAGTTATACAAATAAAAAAAATTACTAAC  690

seq1  GGTTTTCATAATATCAAAATCTTACAAAAACATTTCCTTATTTTGACATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCATAATATCAAAATCTTACAAAAACATTTCCTTATTTTGACATG  740

seq1  ATGAATAATGTGTAGCATATTTTATAAATATAGCACTTGGCAAATATCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAATGTGTAGCATATTTTATAAATATAGCACTTGGCAAATATCTT  790

seq1  TATTTCCACCCCTAAGTTTTGGCATCCAAAAGGAAGGAATTAGAAATCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCCCTAAGTTTTGGCATCCAAAAGGAAGGAATTAGAAATCAG  840

seq1  TGGATCGTTCACTTTAACAAAGAATAACTGAGAATAGTTAGATCTAATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCGTTCACTTTAACAAAGAATAACTGAGAATAGTTAGATCTAATGA  890

seq1  TACTGAAAGCCCATTTATCCACGCCAATAATTTCTCAGAGCTAATTTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGCCCATTTATCCACGCCAATAATTTCTCAGAGCTAATTTGTT  940

seq1  GCTCTGAGGATTAATTTAATTATACATTTTATCTTACATTTACTGTATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGGATTAATTTAATTATACATTTTATCTTACATTTACTGTATAA  990

seq1  TTATATTTTTAACATATATTTTGGTTCCACATTGATACAATTATCAACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTAACATATATTTTGGTTCCACATTGATACAATTATCAACTA  1040

seq1  TAATATATTCTTCTGCAATGTATTTAATAGATCATATAGTTTGTTTTCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTCTTCTGCAATGTATTTAATAGATCATATAGTTTGTTTTCTA  1090

seq1  ATTTCTTTAATTATATGCCATATGAGGCAGGTTTTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAATTATATGCCATATGAGGCAGGTTTTGGAATTC  1132