BAC Information

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BAC

Clone NameB6Ng01-045C06
Chromosome15 (Build37)
Map Location 55,680,891 - 55,681,783
singlet/doubletsinglet
Overlap geneSntb1
Upstream geneEnpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp
Downstream geneLOC665348, LOC100039908, Hba-ps3, Has2, EG594843, LOC435442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045C06.bB6Ng01-045C06.g
ACCDH870684DH870685
length1,152890
definitionDH870684|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C06, 5' end.DH870685|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatacagaatgactgagaagcacctaaagaaatg
ttcaacatccttaatcatcagggaaatgtaaatgaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaacaggaacactcctccattgctggta
ggattgcaagcttgtataaccactctgggagtcagtctggcagttcctca
gaaaactagacatagtactatcagaagatccagcaatacctctcctgggc
atatatccagaagatgtcccatcttgtaataaggacacattttctaccat
gttcatagcagcctaatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtgttacatttacacaatg
aagtactactcagctattaaaaacaatgaatttatgaaattcttgggcaa
atggatgtatctggaggatatcatccttagtgaggtaacccaatcacaaa
agaagtcacttgatatgcactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaatttgcaaaacacatgaaactcaagaagaag
gaagaccaaagtgtggatactccattcctccttagaatagggaacaaaat
acccatggaaggagttacagagacaaagtttggagataagatgaaaggat
ggaccatccagagactactacatctggggatccatcccaaaataagccac
caaatgcagacactattgtatgtgccagcaagattttgctgacaggaccc
tgatatagctgtctcttgtgaggctatgccagtgccttgcaaatacagaa
gtggttgctcacagtcagctattggatggacacagggcccccatggagag
tagagaagtacccaagagctgaaggggtctgcacccttatagtggaacac
aaatgaactaacagtaccccagagctatgtctctagctgcatatgtagca
gagaatgcctatttgcatcatgggagaaagcccttaggtcctttgatcct
ttatagtcccagtacaagggacgccaggccagaatgagatgagtgtagtg
at
gaattctctgtcctgagatggtgggcaaatcgaagacctaatgtgtttca
ttttctagaggctactccaaaaatgattcagtggggccacagaactcctg
aaacctgagcctgactttcccagacagctaatcgcttcaccatccagtct
ccaccattactgcatgtgccagatgccttagcaaatagaaccttcatgct
taatttccagaccacagttcccagaccgcagaagtttgatggctacattt
tttttttgctattccatcatttctatttatgtgactagatatatttttag
agcaggtttaaaaaagatgtggggggaaagcccaccccaaagaacttcct
ggtctaatagagaggatgctggagtcttcacatcagcagaaggaacagga
tgttggctgttgctacaacatatttggttcagcagtgggctgtcatttat
ctgaggggatgtctggttgtaggaggaagggggagcaaatggttctggtt
atttatggatcccatgaattttcatcaataggcaccatgcacttccaatg
ttgataagcatatctattctagagttcaccaaacacaaaatgcttggtaa
tatgtccacttatttcctgtgggaaaagactagcaaaagaaagagagaaa
atagccatttcatatctctcttcccagagacaagtatgtttaaaactgag
cacactgctctggattgttcgattttgtatgtgaatgtatgtgtgtgtaa
gtatgtgtacatacatgtgcatacatacaacttctgggttttaaacaaaa
ctaggcataactttaaatcttacatgttcacatgactagttttcacttta
atacacaccatgaacatctcctcttggggggggggggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55680891_55681783
seq2: B6Ng01-045C06.g_67_956 (reverse)

seq1  AGGTCCCCCCCCCCCCAGAGGAAGATGTTCATGGTGTGTATTCAAGTGAA  50
      ||| ||||||||||| ||||| |||||||||||||||||||| ||||| |
seq2  AGGCCCCCCCCCCCCAAGAGG-AGATGTTCATGGTGTGTATTAAAGTG-A  48

seq1  AAACTAGTCATGTGAACATGTAGGATTTAAAGTTATGCCTTAGTTTTTGT  100
      |||||||||||||||||||||| |||||||||||||||| ||| ||||||
seq2  AAACTAGTCATGTGAACATGTAAGATTTAAAGTTATGCC-TAG-TTTTGT  96

seq1  TTAAAAACCAGAAGTTGTATGTATGCACATGTATGTACACATACTTACAC  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCCAGAAGTTGTATGTATGCACATGTATGTACACATACTTACAC  146

seq1  ACACATACATTCACATAC-AAATCGAACAATCCAGAGCAGTGTGCTCAGT  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACATACATTCACATACAAAATCGAACAATCCAGAGCAGTGTGCTCAGT  196

seq1  TTTAAACATACTTGTCTCTGGGAAGAGAGATATGAAATGGCTATTTTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATACTTGTCTCTGGGAAGAGAGATATGAAATGGCTATTTTCTC  246

seq1  TCTTTCTTTTGCTAGTCTTTTCCCACAGGAAATAAGTGGACATATTACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTGCTAGTCTTTTCCCACAGGAAATAAGTGGACATATTACCA  296

seq1  AGCATTTTGTGTTTGGTGAACTCTAGAATAGATATGCTTATCAACATTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTGTGTTTGGTGAACTCTAGAATAGATATGCTTATCAACATTGG  346

seq1  AAGTGCATGGTGCCTATTGATGAAAATTCATGGGATCCATAAATAACCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATGGTGCCTATTGATGAAAATTCATGGGATCCATAAATAACCAG  396

seq1  AACCATTTGCTCCCCCTTCCTCCTACAACCAGACATCCCCTCAGATAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGCTCCCCCTTCCTCCTACAACCAGACATCCCCTCAGATAAAT  446

seq1  GACAGCCCACTGCTGAACCAAATATGTTGTAGCAACAGCCAACATCCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCACTGCTGAACCAAATATGTTGTAGCAACAGCCAACATCCTGT  496

seq1  TCCTTCTGCTGATGTGAAGACTCCAGCATCCTCTCTATTAGACCAGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCTGATGTGAAGACTCCAGCATCCTCTCTATTAGACCAGGAAG  546

seq1  TTCTTTGGGGTGGGCTTTCCCCCCACATCTTTTTTAAACCTGCTCTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGGTGGGCTTTCCCCCCACATCTTTTTTAAACCTGCTCTAAAA  596

seq1  ATATATCTAGTCACATAAATAGAAATGATGGAATAGCAAAAAAAAAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTAGTCACATAAATAGAAATGATGGAATAGCAAAAAAAAAATGT  646

seq1  AGCCATCAAACTTCTGCGGTCTGGGAACTGTGGTCTGGAAATTAAGCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAAACTTCTGCGGTCTGGGAACTGTGGTCTGGAAATTAAGCATG  696

seq1  AAGGTTCTATTTGCTAAGGCATCTGGCACATGCAGTAATGGTGGAGACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTATTTGCTAAGGCATCTGGCACATGCAGTAATGGTGGAGACTG  746

seq1  GATGGTGAAGCGATTAGCTGTCTGGGAAAGTCAGGCTCAGGTTTCAGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAAGCGATTAGCTGTCTGGGAAAGTCAGGCTCAGGTTTCAGGAG  796

seq1  TTCTGTGGCCCCACTGAATCATTTTTGGAGTAGCCTCTAGAAAATGAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCCCCACTGAATCATTTTTGGAGTAGCCTCTAGAAAATGAAAC  846

seq1  ACATTAGGTCTTCGATTTGCCCACCATCTCAGGACAGAGAATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGTCTTCGATTTGCCCACCATCTCAGGACAGAGAATTC  890