BAC Information

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BAC

Clone NameB6Ng01-046J10
Chromosome15 (Build37)
Map Location 29,121,709 - 29,241,122
singlet/doubletdoublet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J10.bB6Ng01-046J10.g
ACCDH871703DH871704
length1,0471,096
definitionDH871703|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J10, 5' end.DH871704|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,121,709 - 29,122,756)(29,240,011 - 29,241,122)
sequence
gaattcatgtctaagatgagctgaggagatattttctttgaggatgttgc
cactgatagattgttcattcccaagtaaactaccccacactgacaagtat
atggttaacacttattggaataataataaaaatgtaaattatattttagc
attttgtatgacggtatgtttccatatgaatttttccaccttattgtgat
tataatatgctcatttaaccatgctcccatcactgaagaccctatatatt
taaggtgaatgatctagaaaggtcaaacttcaaaacaactcagtgagaga
agatgcctaaaccctggagagacttgaggccccagggagtgggtggggct
gggggtaggaatagcctcttggagacaggggaggaagtatgggatgagga
acagtcagagggcagactgggtcagggataaagactggactgtaaaagaa
gactaaagcatacaaaataaaataaaaatatttaaaaaaacagctaaaag
attataagatgtaggtagctttcctagtcccagagagaaagccaagttac
attacccagtttgaattctatcatctttgggaacaacctggtagccaaga
tgtactctcttgttatatagtggcattgattttatggactaaccaaacag
ttttctgattttgatttgagaaacacccataagaaagagtgtatcattgg
aactaactaacctgaaacaaacaaacaaacaaacaaacaaacaaacattg
cagaaaagttcacagagcttgagaagaactgattgctgttgtttagcaaa
ctgttgtagcatccagctaccttctaagcatttgatgctgtatctgtaga
catgtattgctttctgccttaagaagataccctggtctttccagtaaaca
ttagtgccgagattcctggttgattagagaaatgaaaataattgacagac
agcgtttaggttctaatagatattttacaatcgggatggtttgtaaatcc
tgggaccatgagtggcaacattgggaggggtggcctggttagatagg
gaattccagaaaatgtatgtatttatcaagcagaaacaattacttttgat
cctacacaggaaacataaatgagaaataaaacttttaaataaaattaata
tataaagacaggaagaagcaaactcatcttctagccataaagccagttaa
gaagtatggagggagggacacttaaaaactttataatagcatttgatttt
caaatgagatgattggtttttaatcacagaacatcagtaaaattattctt
cataaattactcagtaaatcctaagggaagaaagagttcttttatgaaga
agaaatctggcaggcaacatctccatatcaaggttaccaagcatcagaaa
tggacagagctgccatctgatgtgatacactgaggatgttacaccttcaa
atatactctgtttctgccaaaaattcattaactaaacttagttgtgatca
aataggagacaaacacaactaagcaactaactacaaaagccatggtcttt
tatccttcaaaaatatagattctgggaaaggatgcaaagtaatccaggat
gaaaagaatgctattgacacattgtgcacagagaaatgttacactcgtgt
attaggatgtattgctgttcaagagattatcaaagctaccgaatttgaac
atgggttgtgatgagttagagacctttcaaccttgtcatatttctgaact
tgacaattgtgttaaagtttcacaaaagaatggctttccactttcatgga
atgcatattaaattatatattgggagagaaacaatcattttagatatttt
gatgtagaataaagacaaaacattagatatagactggaggattatgtaag
aataactggtgaaatgtgagagtttttggatccaaacaaggttaaccaag
tttttgttgtaaatttccttagatttggtacatattcaaatgaaaatcaa
aataactcctgtgtttctaatatggcttaattgttttaaaacagggctat
ttacatccttgatgtgatttatccaataatatataattgatacaataaca
ggaattgaagagagtagatcattcttgaatgcctagaaattgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29121709_29122756
seq2: B6Ng01-046J10.b_46_1092

seq1  GAATTCATGTCTAAGATGAGCTGAGGAGATATTTTCTTTGAGGATGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCTAAGATGAGCTGAGGAGATATTTTCTTTGAGGATGTTGC  50

seq1  CACTGATAGATTGTTCATTCCCAAGTAAACTACCCCACACTGACAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAGATTGTTCATTCCCAAGTAAACTACCCCACACTGACAAGTAT  100

seq1  ATGGTTAACACTTATTGGAATAATAATAAAAATGTAAATTATATTTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAACACTTATTGGAATAATAATAAAAATGTAAATTATATTTTAGC  150

seq1  ATTTTGTATGACGGTATGTTTCCATATGAATTTTTCCACCTTATTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATGACGGTATGTTTCCATATGAATTTTTCCACCTTATTGTGAT  200

seq1  TATAATATGCTCATTTAACCATGCTCCCATCACTGAAGACCCTATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATGCTCATTTAACCATGCTCCCATCACTGAAGACCCTATATATT  250

seq1  TAAGGTGAATGATCTAGAAAGGTCAAACTTCAAAACAACTCAGTGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAATGATCTAGAAAGGTCAAACTTCAAAACAACTCAGTGAGAGA  300

seq1  AGATGCCTAAACCCTGGAGAGACTTGAGGCCCCAGGGAGTGGGTGGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTAAACCCTGGAGAGACTTGAGGCCCCAGGGAGTGGGTGGGGCT  350

seq1  GGGGGTAGGAATAGCCTCTTGGAGACAGGGGAGGAAGTATGGGATGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGGAATAGCCTCTTGGAGACAGGGGAGGAAGTATGGGATGAGGA  400

seq1  ACAGTCAGAGGGCAGACTGGGTCAGGGATAAAGACTGGACTGTAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGAGGGCAGACTGGGTCAGGGATAAAGACTGGACTGTAAAAGAA  450

seq1  GACTAAAGCATACAAAATAAAATAAAAATATTTAAAAAAACAGCTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGCATACAAAATAAAATAAAAATATTTAAAAAAACAGCTAAAAG  500

seq1  ATTATAAGATGTAGGTAGCTTTCCTAGTCCCAGAGAGAAAGCCAAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGATGTAGGTAGCTTTCCTAGTCCCAGAGAGAAAGCCAAGTTAC  550

seq1  ATTACCCAGTTTGAATTCTATCATCTTTGGGAACAACCTGGTAGCCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCAGTTTGAATTCTATCATCTTTGGGAACAACCTGGTAGCCAAGA  600

seq1  TGTACTCTCTTGTTATATAGTGGCATTGATTTTATGGACTAACCAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCTTGTTATATAGTGGCATTGATTTTATGGACTAACCAAACAG  650

seq1  -TTTCTGA-TTTGATTTGAGAAACACCCATAAGAAAGAGTGTATCATTGG  698
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATTTTGATTTGAGAAACACCCATAAGAAAGAGTGTATCATTGG  700

seq1  AACT-ACTAACCTGAAACAAACAAACAAACAAACAAACAAACAAACATTG  747
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAACCTGAAACAAACAAACAAACAAACAAACAAACAAACATTG  750

seq1  CAGAAAAGTTCACAGAGCTTGAGAAGAACTGATTGCTGTTGTTTAGCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTTCACAGAGCTTGAGAAGAACTGATTGCTGTTGTTTAGCAAA  800

seq1  CTGTTGTAGCATCCAGCTACCTTCTAAGCATTTGATGCTGTATCTGTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAGCATCCAGCTACCTTCTAAGCATTTGATGCTGTATCTGTAGA  850

seq1  CATGTATTGCTTTCTGCCTTAAGAAGATAACCCTGTCTTTCCAGTAAACA  897
      ||||||||||||||||||||||||||||| ||  ||||||||||||||||
seq2  CATGTATTGCTTTCTGCCTTAAGAAGATACCCTGGTCTTTCCAGTAAACA  900

seq1  TTAGTGCCGAGATCCCTGGTTGTATAGAGAAATGAAAAATAATTGACAGA  947
      ||||||||||||| ||||||||  |||||||||| |||||||||||||||
seq2  TTAGTGCCGAGATTCCTGGTTGATTAGAGAAATG-AAAATAATTGACAGA  949

seq1  CAGCGTTTA-GTTCTAAATAAGATATTTAACAACTGTGATGGTTTGTATA  996
      ||||||||| |||||||   |||||||| ||||  | ||||||||||| |
seq2  CAGCGTTTAGGTTCTAA--TAGATATTTTACAATCGGGATGGTTTGTAAA  997

seq1  TTCTTGGACCAGGGAGTGGCAACATTTGGAGGTGTGGCCTTGTTAGAATA  1046
      | || ||||||  ||||||||||||| ||||| ||||||| ||||| |||
seq2  TCCTGGGACCA-TGAGTGGCAACATTGGGAGGGGTGGCCTGGTTAG-ATA  1045

seq1  GG  1048
      ||
seq2  GG  1047

seq1: chr15_29240011_29241122
seq2: B6Ng01-046J10.g_66_1161 (reverse)

seq1  ACAACAATATTTTCCTAGGCATCTCAAGATTGATCCTACTCTTCCTTCAA  50
      |||||||    || |||||||| |||||| |||| |||||||  ||||||
seq2  ACAACAA----TTTCTAGGCAT-TCAAGAATGAT-CTACTCT--CTTCAA  42

seq1  TTCCTGTTTATTGTACTCAATTTATATTATTATGTGATTAAT-TCATCAA  99
      |||||| |||||||| |||| ||||| ||||||  ||| |||  ||||||
seq2  TTCCTG-TTATTGTA-TCAA-TTATA-TATTATTGGATAAATCACATCAA  88

seq1  GGATGTAAATAGCCCTGTTTTAAAAACAATTAAGCCATATTTAAGAAACA  149
      ||||||||||||||||||||| |||||||||||||||||||  |||||||
seq2  GGATGTAAATAGCCCTGTTTT-AAAACAATTAAGCCATATT--AGAAACA  135

seq1  CAGG-GGTATTTTGATTTTCATTTTGAATTATGTACCAAATCTAAGGAAA  198
      |||| | |||||||||||||| |||||| |||||||||||||||||||||
seq2  CAGGAGTTATTTTGATTTTCA-TTTGAA-TATGTACCAAATCTAAGGAAA  183

seq1  TTTACAGCAAAAACTTGGTTAACCTTGTTTGGATCCATAAACTTCTCACA  248
      |||||| |||||||||||||||||||||||||||||| |||| |||||||
seq2  TTTACAACAAAAACTTGGTTAACCTTGTTTGGATCCAAAAAC-TCTCACA  232

seq1  TTTCACCAGTTATTCTTACAT-ATCCTCCAGTCTATATCTAATGTTTTTG  297
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TTTCACCAGTTATTCTTACATAATCCTCCAGTCTATATCTAATG-TTTTG  281

seq1  TCTTTATTCTACATCAAAATATCTGAAATGATTGTTTCTCTCCCAATATA  347
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTTATTCTACATCAAAATATCTAAAATGATTGTTTCTCTCCCAATATA  331

seq1  TAATTTAATATGCATTCCATGAAAGTGGAAAGCCATTCTTTTGTGAAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATATGCATTCCATGAAAGTGGAAAGCCATTCTTTTGTGAAACT  381

seq1  TTAACACAATTGTCAAGTTCAGAAATATGACAAGGTTGAAAGGTCTCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAATTGTCAAGTTCAGAAATATGACAAGGTTGAAAGGTCTCTAA  431

seq1  CTCATCACAACCCATGTTCAAATTCGGTAGCTTTGATAATCTCTTGAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACAACCCATGTTCAAATTCGGTAGCTTTGATAATCTCTTGAACA  481

seq1  GCAATACATCCTAATACACGAGTGTAACATTTCTCTGTGCACAATGTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACATCCTAATACACGAGTGTAACATTTCTCTGTGCACAATGTGTC  531

seq1  AATAGCATTCTTTTCATCCTGGATTACTTTGCATCCTTTCCCAGAATCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTCTTTTCATCCTGGATTACTTTGCATCCTTTCCCAGAATCTA  581

seq1  TATTTTTGAAGGATAAAAGACCATGGCTTTTGTAGTTAGTTGCTTAGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAAGGATAAAAGACCATGGCTTTTGTAGTTAGTTGCTTAGTTG  631

seq1  TGTTTGTCTCCTATTTGATCACAACTAAGTTTAGTTAATGAATTTTTGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTCCTATTTGATCACAACTAAGTTTAGTTAATGAATTTTTGGC  681

seq1  AGAAACAGAGTATATTTGAAGGTGTAACATCCTCAGTGTATCACATCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGTATATTTGAAGGTGTAACATCCTCAGTGTATCACATCAGA  731

seq1  TGGCAGCTCTGTCCATTTCTGATGCTTGGTAACCTTGATATGGAGATGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTCTGTCCATTTCTGATGCTTGGTAACCTTGATATGGAGATGTT  781

seq1  GCCTGCCAGATTTCTTCTTCATAAAAGAACTCTTTCTTCCCTTAGGATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAGATTTCTTCTTCATAAAAGAACTCTTTCTTCCCTTAGGATTT  831

seq1  ACTGAGTAATTTATGAAGAATAATTTTACTGATGTTCTGTGATTAAAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTAATTTATGAAGAATAATTTTACTGATGTTCTGTGATTAAAAAC  881

seq1  CAATCATCTCATTTGAAAATCAAATGCTATTATAAAGTTTTTAAGTGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCTCATTTGAAAATCAAATGCTATTATAAAGTTTTTAAGTGTCC  931

seq1  CTCCCTCCATACTTCTTAACTGGCTTTATGGCTAGAAGATGAGTTTGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCATACTTCTTAACTGGCTTTATGGCTAGAAGATGAGTTTGCTT  981

seq1  CTTCCTGTCTTTATATATTAATTTTATTTAAAAGTTTTATTTCTCATTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTCTTTATATATTAATTTTATTTAAAAGTTTTATTTCTCATTTA  1031

seq1  TGTTTCCTGTGTAGGATCAAAAGTAATTGTTTCTGCTTGATAAATACATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTGTAGGATCAAAAGTAATTGTTTCTGCTTGATAAATACATA  1081

seq1  CATTTTCTGGAATTC  1112
      |||||||||||||||
seq2  CATTTTCTGGAATTC  1096