BAC Information

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BAC

Clone NameB6Ng01-047M24
Chromosome15 (Build37)
Map Location 16,669,841 - 16,826,421
singlet/doubletdoublet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream geneLOC100040162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M24.bB6Ng01-047M24.g
ACCDH872569DH872570
length1,136969
definitionDH872569|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M24, 5' end.DH872570|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,669,841 - 16,670,999)(16,825,646 - 16,826,421)
sequence
gaattccaatttgctggttacagccaagtaagtacactagaactgcacca
ttaggcttattgtgccatgttggttttgttgtacttcataagtatcatta
gctaggcaggacagttggtttcttcccttttttggatacttcatggatac
cagtaggtatccatgaaagctactcctaaggcttacagatcatttctagc
cagtagcctctgggttatgtgtatgaagtacatgaaatgttcatcaaaaa
ttacctactttctcccaccatcagaaaataaatagatatagtaatagctt
gtaatgttttaggtttctcttggataactctgaccaagaaccaaaaacag
tattcctcatgacttatcttgtggatattaataggtactttttggccctt
gtagggagcattttcagctcagataagatatttctatttaaattacatat
gtgcatctatgtaccaattacatgtatcatatatattttaggtagatagt
taacatgattccttatggatttttacacacacacttagatatgtgtatat
aacaaacaatgaaggaaaaagttctgaatttgaacaataacaagacattt
acatgggaggaattagagaaagaagaaggaagtaggaagatgatgcagaa
ttataatttcagaaacaaaaaaattataaagcattttatactgcttctga
ttttgagattccctaatatatgctttctaatatgctttactctgataaca
aataaagtacaggtaaatatgttagcttattgactgtctatttgtaaccc
ctaattcatttggtccatttaatcaccaggtaatttcccttctgatttca
gaagaaacaacgtgcttcttttcaaatataataagcaagaatttagattg
gttggccttattttttgtccacaaggacatgaaaaacatcacagtcagac
accatagttataagaggagaatttgctgtatatgtcaggggtgaatttca
gaccgcttttaatatcttgacacttcatgaaattgtggtgtgagatttta
acatacatcatttagaaatcctgaggggatactatctattactatttgat
agaaatttttgctatgttaatgaactgtagatgcgt
gaattcagattcctgtgagccacataaaaagccacaatggcacatgccta
taatatggtgcggggaaaggagagatagcaagattcctggagctcgatgg
ccaattattcttgccaaatctatgagatccatattcaatggatgacacca
acctctgacctttatgaacgtgtgtgtacaccttgcccacagaaaacagg
tgcacacacataacttcacgtaaataaatacaatgaattctagggccaaa
gcctttgccagaaagtttccagggattgagtcttttcccattcagaacat
ttcagaaaaaataaaatcgcagaaagtctctgaaatatagataaagaaga
gatattttgctgtgtgatctactttaaagatttctggtgttaattaatat
atatatataatatatatatattattgtatatatattttatattatatata
tattaaataccttaaacagttcaatggctgggctactgcctaactctaca
tggctaacacatacaccattttcttccaatattcctgagttaatactctt
taaatctatatatcatctttgcttccctggacccggctgagcctctctcc
tgaggctgcttttcccctgtacctacatgttggccaactcaccctcctgc
acctttctagcatgctcccgtctcctatgccatcatcatggcggaatctt
tcttccttcctcctcggtcccttaccaggaatcctaaatgccccaccaat
gtctccttgcccagccattgacctctggtactttattgatgagtaaaaaa
ccaactggagagagtcttgccatttagaaaggggaaacttagaagtttct
ttcattcaggactctgcaaacagatattttgggtaacaaattagcatgag
aacacaggccactacattctgtgttagaaattttgaagatggggtggttg
ggcccatcctcaacttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16669841_16670999
seq2: B6Ng01-047M24.b_45_1180

seq1  GAATTCCAATTTGCTGGTTACAGCCAAGTAAGTACACTAGAACTGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTGCTGGTTACAGCCAAGTAAGTACACTAGAACTGCACCA  50

seq1  TTAGGCTTATTGTGCCATGTTGGTTTTGTTGTACTTCATAAGTATCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTATTGTGCCATGTTGGTTTTGTTGTACTTCATAAGTATCATTA  100

seq1  GCTAGGCAGGACAGTTGGTTTCTTCCCTTTTTTGGATACTTCATGGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAGGACAGTTGGTTTCTTCCCTTTTTTGGATACTTCATGGATAC  150

seq1  CAGTAGGTATCCATGAAAGCTACTCCTAAGGCTTACAGATCATTTCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTATCCATGAAAGCTACTCCTAAGGCTTACAGATCATTTCTAGC  200

seq1  CAGTAGCCTCTGGGTTATGTGTATGAAGTACATGAAATGTTCATCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCTCTGGGTTATGTGTATGAAGTACATGAAATGTTCATCAAAAA  250

seq1  TTACCTACTTTCTCCCACCATCAGAAAATAAATAGATATAGTAATAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACTTTCTCCCACCATCAGAAAATAAATAGATATAGTAATAGCTT  300

seq1  GTAATGTTTTAGGTTTCTCTTGGATAACTCTGACCAAGAACCAAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTTTAGGTTTCTCTTGGATAACTCTGACCAAGAACCAAAAACAG  350

seq1  TATTCCTCATGACTTATCTTGTGGATATTAATAGGTACTTTTTGGCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCATGACTTATCTTGTGGATATTAATAGGTACTTTTTGGCCCTT  400

seq1  GTAGGGAGCATTTTCAGCTCAGATAAGATATTTCTATTTAAATTACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAGCATTTTCAGCTCAGATAAGATATTTCTATTTAAATTACATAT  450

seq1  GTGCATCTATGTACCAATTACATGTATCATATATATTTTAGGTAGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTATGTACCAATTACATGTATCATATATATTTTAGGTAGATAGT  500

seq1  TAACATGATTCCTTATGGATTTTTACACACACACTTAGATATGTGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATTCCTTATGGATTTTTACACACACACTTAGATATGTGTATAT  550

seq1  AACAAACAATGAAGGAAAAAGTTCTGAATTTGAACAATAACAAGACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAATGAAGGAAAAAGTTCTGAATTTGAACAATAACAAGACATTT  600

seq1  ACATGGGAGGAATTAGAGAAAGAAGAAGGAAGTAGGAAGATGATGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGAGGAATTAGAGAAAGAAGAAGGAAGTAGGAAGATGATGCAGAA  650

seq1  TTATAATTTCAGAAACAAAAAAATTATAAAGCATTTTATACTGCTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTCAGAAACAAAAAAATTATAAAGCATTTTATACTGCTTCTGA  700

seq1  TTTTGAGATTCCCTAATATATGCTTTCTAATATGCTTTACTCTGATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTCCCTAATATATGCTTTCTAATATGCTTTACTCTGATAACA  750

seq1  AATAAAGTACAGGTAAATATGTTAGCTTATTGACTGTCTATTTGTAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTACAGGTAAATATGTTAGCTTATTGACTGTCTATTTGTAACCC  800

seq1  CTAATTCATTTGGTCCATTTAATCACCAGGTAATTTCCCTTCTGATTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCATTTGGTCCATTTAATCACCAGGTAATTTCCCTTCTGATTTCA  850

seq1  GAAGAAACAACGTGCTTCTTTTCAAAATATAATAAGCAAGAATTTAGATT  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAGAAACAACGTGCTTCTTTTC-AAATATAATAAGCAAGAATTTAGATT  899

seq1  GGTTGGCCTTATTTTTTGTCCACAAGGACATGAAAAACATCACAGTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTTATTTTTTGTCCACAAGGACATGAAAAACATCACAGTCAGA  949

seq1  CACCATAGTTATAAGAGAGAAATTTGCTGTATATGTCAAGAGTGAATTTC  1000
      |||||||||||||||||   |||||||||||||||||| | |||||||||
seq2  CACCATAGTTATAAGAGGAGAATTTGCTGTATATGTCAGGGGTGAATTTC  999

seq1  AGACCGCTTTTTAATATCTTGACACTTCATGAAATTTGTGTGTGAGATTT  1050
      ||||||| ||||||||||||||||||||||||||||   |||||||||||
seq2  AGACCGC-TTTTAATATCTTGACACTTCATGAAATTGTGGTGTGAGATTT  1048

seq1  TAAACATTACAATCATTTTAGAATATCCTGAGGGGAAAAATAACTAATAC  1100
      | |||| ||| |||| ||||||| ||||||||||||      ||||   |
seq2  T-AACA-TAC-ATCA-TTTAGAA-ATCCTGAGGGGA-----TACTA--TC  1086

seq1  TATTACTATTTTGATTAGAAATGTTTTGCTAATGTTAATTAGAACTGGTT  1150
      |||||||| ||||| ||||||| ||||||| ||||||||  ||||||   
seq2  TATTACTA-TTTGA-TAGAAAT-TTTTGCT-ATGTTAAT--GAACTG---  1127

seq1  AAGATGCGT  1159
       ||||||||
seq2  TAGATGCGT  1136

seq1: chr15_16825646_16826421
seq2: B6Ng01-047M24.g_69_844 (reverse)

seq1  AGAGGTCAATGGCTGGGCAAGGAGACATTGGTGGGGCATTTAGGATTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAATGGCTGGGCAAGGAGACATTGGTGGGGCATTTAGGATTCCT  50

seq1  GGTAAGGGACCGAGGAGGAAGGAAGAAAGATTCCGCCATGATGATGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGACCGAGGAGGAAGGAAGAAAGATTCCGCCATGATGATGGCAT  100

seq1  AGGAGACGGGAGCATGCTAGAAAGGTGCAGGAGGGTGAGTTGGCCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACGGGAGCATGCTAGAAAGGTGCAGGAGGGTGAGTTGGCCAACAT  150

seq1  GTAGGTACAGGGGAAAAGCAGCCTCAGGAGAGAGGCTCAGCCGGGTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTACAGGGGAAAAGCAGCCTCAGGAGAGAGGCTCAGCCGGGTCCAG  200

seq1  GGAAGCAAAGATGATATATAGATTTAAAGAGTATTAACTCAGGAATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAGATGATATATAGATTTAAAGAGTATTAACTCAGGAATATTG  250

seq1  GAAGAAAATGGTGTATGTGTTAGCCATGTAGAGTTAGGCAGTAGCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGGTGTATGTGTTAGCCATGTAGAGTTAGGCAGTAGCCCAGC  300

seq1  CATTGAACTGTTTAAGGTATTTAATATATATATAATATAAAATATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTGTTTAAGGTATTTAATATATATATAATATAAAATATATATA  350

seq1  CAATAATATATATATATTATATATATATATTAATTAACACCAGAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATATATATATTATATATATATATTAATTAACACCAGAAATCTT  400

seq1  TAAAGTAGATCACACAGCAAAATATCTCTTCTTTATCTATATTTCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGATCACACAGCAAAATATCTCTTCTTTATCTATATTTCAGAGA  450

seq1  CTTTCTGCGATTTTATTTTTTCTGAAATGTTCTGAATGGGAAAAGACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCGATTTTATTTTTTCTGAAATGTTCTGAATGGGAAAAGACTCA  500

seq1  ATCCCTGGAAACTTTCTGGCAAAGGCTTTGGCCCTAGAATTCATTGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGAAACTTTCTGGCAAAGGCTTTGGCCCTAGAATTCATTGTATT  550

seq1  TATTTACGTGAAGTTATGTGTGTGCACCTGTTTTCTGTGGGCAAGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACGTGAAGTTATGTGTGTGCACCTGTTTTCTGTGGGCAAGGTGTA  600

seq1  CACACACGTTCATAAAGGTCAGAGGTTGGTGTCATCCATTGAATATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTTCATAAAGGTCAGAGGTTGGTGTCATCCATTGAATATGGAT  650

seq1  CTCATAGATTTGGCAAGAATAATTGGCCATCGAGCTCCAGGAATCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGATTTGGCAAGAATAATTGGCCATCGAGCTCCAGGAATCTTGCT  700

seq1  ATCTCTCCTTTCCCCGCACCATATTATAGGCATGTGCCATTGTGGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTTTCCCCGCACCATATTATAGGCATGTGCCATTGTGGCTTTT  750

seq1  TATGTGGCTCACAGGAATCTGAATTC  776
      ||||||||||||||||||||||||||
seq2  TATGTGGCTCACAGGAATCTGAATTC  776