BAC Information

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BAC

Clone NameB6Ng01-047N06
Chromosome15 (Build37)
Map Location 85,890,904 - 86,018,053
singlet/doubletdoublet
Overlap geneBC021523, Cerk
Upstream gene3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1
Downstream geneLOC100042300, Tbc1d22a, LOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047N06.bB6Ng01-047N06.g
ACCDH872579DH872580
length973966
definitionDH872579|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N06, 5' end.DH872580|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,890,904 - 85,891,887)(86,017,076 - 86,018,053)
sequence
gaattctttgtggaccatcatttccctgctttcctctgccatcctggctg
atggtggtgaacatggctgtccctgttggttccggagatgtctgtctgag
tccatgctagaacttatgtcctataaactgcccgagatagtctcagagtt
gaggtctgtttccacccagcctgggcacctgtttatcctgtgcctcctcc
ccaggcaggcagagaggtttttgcagaggtgtattccttaagggaaaacc
agtggtctctctctctccaaacctcctggtgccctccattatcgtggctc
ccccggagtggcgccagcagacagcgcagtcgtcggtgccaacagccgtg
gcctccgctgtcctcattctctctgggcttcaccttcaccttcaccacct
agaaagaggagagtcggacctgtttcctgaatcaacatttctgcctcaca
atagcgagtgctccacacaatggaaacagtgtcaccggaggctctgagac
ttggctgtgcttgtacggcataggaagttacagctgtttagaaatagcaa
ctccagccatgccacatctggacagaattcatgtctggagaaccaaaggc
ttagtattctgctgtgggatccttgttggctaatgtgctttgtggtgtcc
cttccttctctggggacacatgggagccctatccagttcctcatgcactg
gtagggcttctctctagaagccggatctactgagcctttacagggttggg
gtgctcatgatggggcaaggactgtgtttgggggccgtcctctttgggga
gctgggtaggtaggttctccttctaagcagccctggcccctctgctctgg
tgtttggctttctggtatatcataatggcagcactttagtgtgtgtggcg
gtaatgtctgtcagtggaaatgcaatgactgcttgttgttggcaactttc
tgagcttctgcatctactgctag
gaattcaaatgggggaggggggtacacttcagtccgaggtaggcactgca
ggatcctggttctcactagtgagctataattcacacaggtggccctcctc
aggttctttagtattttgtggaccgtgtggctgtgtcttcctggatggaa
ctcctctaggactaaggtggagtccagtcctcttggtattaaacacttac
atataaacactgcattaatttccaggcgtggtggctcatacctttaatct
cagctcttgggaggcagagggaggtggatctttaagtttgagagtctata
gagtgagctccaggacaatcaggactacccagagaaaccctgtctcaaaa
taataataataataatagtaataataataattaataataataatagcccc
tgctgcccttgcccgacacaacccctcaccagtaacagaggcagcatcat
cagcaatggcaagaggtttctgaagaagtttcatgtccacattccccaag
cctcatcccgatagccgtgaaaggaaagagctgggacagccattgcttca
actaacaactgagctaggtcaggtccagcttgctccagggtggggctagg
attctgcctgggcctaaccaacactccagggctgtcaggagcctaccatt
gggctgggctccaggaagcaagtgattcatggtttgtccctgccctgcag
atggacacagggcaccgacaggatcagacctgtaccttagccctctggta
ccaggcacaggcaaggtagacttggccagtctccaccccagtctgcaaca
gcaagagagcttgagggggagggcataaggctcttctgtcttctcgaaac
tgactctctgtgagctagctctgtcccacacaaaagcctgcatctggacc
agtagatcccgaggaaactcttgctttgtcaatgtgacgatgctatcccg
catccaatatctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85890904_85891887
seq2: B6Ng01-047N06.b_49_1021

seq1  GAATTCTTTGTGGACCATCATTTCCCTGCTTTCCTCTGCCATCCTGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGACCATCATTTCCCTGCTTTCCTCTGCCATCCTGGCTG  50

seq1  ATGGTGGTGAACATGGCTGTCCCTGTTGGTTCCGGAGATGTCTGTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGAACATGGCTGTCCCTGTTGGTTCCGGAGATGTCTGTCTGAG  100

seq1  TCCATGCTAGAACTTATGTCCTATAAACTGCCCGAGATAGTCTCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTAGAACTTATGTCCTATAAACTGCCCGAGATAGTCTCAGAGTT  150

seq1  GAGGTCTGTTTCCACCCAGCCTGGGCACCTGTTTATCCTGTGCCTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGTTTCCACCCAGCCTGGGCACCTGTTTATCCTGTGCCTCCTCC  200

seq1  CCAGGCAGGCAGAGAGGTTTTTGCAGAGGTGTATTCCTTAAGGGAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGCAGAGAGGTTTTTGCAGAGGTGTATTCCTTAAGGGAAAACC  250

seq1  AGTGGTCTCTCTCTCTCCAAACCTCCTGGTGCCCTCCATTATCGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCTCTCTCTCCAAACCTCCTGGTGCCCTCCATTATCGTGGCTC  300

seq1  CCCCGGAGTGGCGCCAGCAGACAGCGCAGTCGTCGGTGCCAACAGCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGTGGCGCCAGCAGACAGCGCAGTCGTCGGTGCCAACAGCCGTG  350

seq1  GCCTCCGCTGTCCTCATTCTCTCTGGGCTTCACCTTCACCTTCACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGCTGTCCTCATTCTCTCTGGGCTTCACCTTCACCTTCACCACCT  400

seq1  AGAAAGAGGAGAGTCGGACCTGTTTCCTGAATCAACATTTCTGCCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAGAGTCGGACCTGTTTCCTGAATCAACATTTCTGCCTCACA  450

seq1  ATAGCGAGTGCTCCACACAATGGAAACAGTGTCACCGGAGGCTCTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGAGTGCTCCACACAATGGAAACAGTGTCACCGGAGGCTCTGAGAC  500

seq1  TTGGCTGTGCTTGTACGGCATAGGAAGTTACAGCTGTTTAGAAATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTGCTTGTACGGCATAGGAAGTTACAGCTGTTTAGAAATAGCAA  550

seq1  CTCCAGCCATGCCACATCTGGACAGAATTCATGTCTGGAGAACCAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATGCCACATCTGGACAGAATTCATGTCTGGAGAACCAAAGGC  600

seq1  TTAGTATTCTGCTGTGGGATCCTTGTTGGCTAATGTGCTTTGTGGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTCTGCTGTGGGATCCTTGTTGGCTAATGTGCTTTGTGGTGTCC  650

seq1  CTTCCTTCTCTGGGGACACATGGGAGCCCTATCCAGTTCCTCATGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCTGGGGACACATGGGAGCCCTATCCAGTTCCTCATGCACTG  700

seq1  GTAGGGCTTCTCTCTAGAAGCCGGATCTACTGAGCCTTTACAGGGTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTTCTCTCTAGAAGCCGGATCTACTGAGCCTTTACAGGGTTGGG  750

seq1  GTGCTCATGATGGGGCAAGGACTGTGTTTGGGGGCCGTCCTCTTTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATGATGGGGCAAGGACTGTGTTTGGGGGCCGTCCTCTTTGGGGA  800

seq1  GCTGGGTAGGTAGGTTCTCCTTCTAAGCAGCCCTGGCCCCTCTGCTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTAGGTAGGTTCTCCTTCTAAGCAGCCCTGGCCCCTCTGCTCTGG  850

seq1  TGTTTGGCTTTCTTGGTATATCATAATGGCAGCACTTTAGTGTGTGTGGC  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCTTTC-TGGTATATCATAATGGCAGCACTTTAGTGTGTGTGGC  899

seq1  GGTAATTGTCTGTCAGTGGAGATGCAGTGACTGGCTTGTGTGGTTGGGCC  950
      ||||| |||||||||||||| ||||| ||||| |||  ||| |||||  |
seq2  GGTAA-TGTCTGTCAGTGGAAATGCAATGACT-GCT--TGTTGTTGG--C  943

seq1  ACCTTTTCTGAGCTTCTGCATTCTTCCCTGCTAG  984
      | | |||||||||||||||| |||   |||||||
seq2  AAC-TTTCTGAGCTTCTGCA-TCT--ACTGCTAG  973

seq1: chr15_86017076_86018053
seq2: B6Ng01-047N06.g_68_1033 (reverse)

seq1  ACTCAGATATTGGTTGCGTGATAGCATCTGTTCACATCTGACCAAGGAAG  50
      ||||||||||||| |||| |||||||||   |||||| |||| ||| |||
seq2  ACTCAGATATTGGATGCGGGATAGCATC--GTCACAT-TGACAAAGCAAG  47

seq1  AGTCTCCTCGGAGATGCTAACTGGTCCAAGAGTGCAGGGCTCTGTGGTGT  100
      ||| ||||||| ||| || |||||||| ||| ||||||  | ||| ||| 
seq2  AGTTTCCTCGG-GAT-CT-ACTGGTCC-AGA-TGCAGGCTTTTGT-GTGG  91

seq1  GACAGAGCTAAGCCTCACAGCGGAGTCAGCTTTCAAGAAGACAGGAGAGC  150
      ||||||||||   |||||||  ||||||| |||| ||||||||| |||||
seq2  GACAGAGCTA--GCTCACAG-AGAGTCAG-TTTCGAGAAGACAGAAGAGC  137

seq1  CTTCTGCCCTCCCCCTC-AGCTCTCCTGCTGTTGCAGACTGGGGTGGAG-  198
      ||| ||||||||||||| ||||||| ||||||||||||||||||||||| 
seq2  CTTATGCCCTCCCCCTCAAGCTCTCTTGCTGTTGCAGACTGGGGTGGAGA  187

seq1  CTGGCCAAGTCTACCTTGCCTGTGCCTGGTACCAGAGGGCTAAGGTACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAGTCTACCTTGCCTGTGCCTGGTACCAGAGGGCTAAGGTACAG  237

seq1  GTCTGATCCTGTCGGTGCCCTGTGTCCATCTGCAGGGCAGGGAC-AACCA  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCTGATCCTGTCGGTGCCCTGTGTCCATCTGCAGGGCAGGGACAAACCA  287

seq1  TGAATCACTTGCTTCCTGGAAGCCCAGCCCAATGGTAGGCTCCCTGACAG  347
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TGAATCACTTGCTTCCTGG-AGCCCAGCCCAATGGTAGGCT-CCTGACAG  335

seq1  CCCTGGAGTGTTGGTTAGGCCCAGGCAGAATCCTAGCCCCACCCTGGAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTGTTGGTTAGGCCCAGGCAGAATCCTAGCCCCACCCTGGAGC  385

seq1  AAGCTGGACCTGACCTAGCTCAGTTGTTAGTTGAAGCAATGGCTGTCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGACCTGACCTAGCTCAGTTGTTAGTTGAAGCAATGGCTGTCCCA  435

seq1  GCTCTTTCCTTTCACGGCTATCGGGATGAGGCTTGGGGAATGTGGACATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCCTTTCACGGCTATCGGGATGAGGCTTGGGGAATGTGGACATG  485

seq1  AAACTTCTTCAGAAACCTCTTGCCATTGCTGATGATGCTGCCTCTGTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTTCAGAAACCTCTTGCCATTGCTGATGATGCTGCCTCTGTTAC  535

seq1  TGGTGAGGGGTTGTGTCGGGCAAGGGCAGCAGGGGCTATTATTATTATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGGGTTGTGTCGGGCAAGGGCAGCAGGGGCTATTATTATTATTA  585

seq1  ATTATTATTATTACTATTATTATTATTATTATTTTGAGACAGGGTTTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTACTATTATTATTATTATTATTTTGAGACAGGGTTTCTC  635

seq1  TGGGTAGTCCTGATTGTCCTGGAGCTCACTCTATAGACTCTCAAACTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTCCTGATTGTCCTGGAGCTCACTCTATAGACTCTCAAACTTAA  685

seq1  AGATCCACCTCCCTCTGCCTCCCAAGAGCTGAGATTAAAGGTATGAGCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACCTCCCTCTGCCTCCCAAGAGCTGAGATTAAAGGTATGAGCCA  735

seq1  CCACGCCTGGAAATTAATGCAGTGTTTATATGTAAGTGTTTAATACCAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCTGGAAATTAATGCAGTGTTTATATGTAAGTGTTTAATACCAAG  785

seq1  AGGACTGGACTCCACCTTAGTCCTAGAGGAGTTCCATCCAGGAAGACACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGACTCCACCTTAGTCCTAGAGGAGTTCCATCCAGGAAGACACA  835

seq1  GCCACACGGTCCACAAAATACTAAAGAACCTGAGGAGGGCCACCTGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACGGTCCACAAAATACTAAAGAACCTGAGGAGGGCCACCTGTGTG  885

seq1  AATTATAGCTCACTAGTGAGAACCAGGATCCTGCAGTGCCTACCTCGGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGCTCACTAGTGAGAACCAGGATCCTGCAGTGCCTACCTCGGAC  935

seq1  TGAAGTGTACCCCCCTCCCCCATTTGAATTC  978
      |||||||||||||||||||||||||||||||
seq2  TGAAGTGTACCCCCCTCCCCCATTTGAATTC  966