BAC Information

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BAC

Clone NameB6Ng01-052C18
Chromosome15 (Build37)
Map Location 43,100,426 - 43,226,264
singlet/doubletdoublet
Overlap geneEif3s6
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2, LOC675960
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C18.bB6Ng01-052C18.g
ACCDH875604DH875605
length1,1721,042
definitionDH875604|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C18, 5' end.DH875605|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,100,426 - 43,101,610)(43,225,218 - 43,226,264)
sequence
gaattccaatataggatatcttaggaatagtgaaacagcatagaattgaa
tgtttttaaagacagagtaatacatgtcgtaacttttcaaagtaaatatt
aaaacttccaattataagatacatttattgtagaaatttttagactaatt
ataaagccatactacataactatgatactcataaaactagaatatgcaat
acgtggtcagataaaagctttttgtaaagcttaggaaggtttgtaacccc
ctaaaggttcacgtgcactaccctggctgaactccatgtcattacagttg
gctcttcatagcaacctgctttcaagcgtggatatactagaagagtttca
atatctggatttccagcagttaccttaagtttccatgtcttaggaaaatg
gcacgttcactcactgaccagcaacaataaatttactgtgctgggactct
aacatgacactaaatcttcattctcaaaattcactcccagcagtaacaaa
tgatatgaataaccggctcttttcatgtacctgtaatcataccaggcttc
tggctttacaatcctagcttaagctgtttatattctcaaagtaatcaact
tttgctctcctaaatctctggtaacatccaaggtaaaagcgatggaattt
tctgataagtcactccaagtttaacatcaatgattaccttcagtacactg
gcaagcaaatcacagcttatccataagtgaaaaactcattgcaaatgagg
ggaaaagaaaaataatgttttaaatctagcttaggaataaagagaaaaca
tctgtttccttgaaggaaggatggtgggtagtattaaaaagttccctgtg
caattttagtgtaggagatgagtaacatcgatccgccctttgaactaccc
caaacaggtaagctggatttcactgaaagcaccaaaaacacatggtccaa
gtggttttctttgtgacatagaaactaaggaaaaagcaacagaaaataag
aaatgttagattggaagaaagaagtcctgtcttaaccagactttaacttc
taggataaagtagacaaccactggctttgcgacttgttcatcattcaggg
gtaataaaatttaaactccccagataaaaggctggtaagaggctttgata
cttttgaaaggactctactact
gaattcataagagccccacaacctgcaagggagttaaacatgacttactc
ataggaagtctagttctggagtctggacttttctgtgtgtggtgatgctc
aaggaaaggatgaaatataagctgttaaagctgagagaaaaggagttcat
ctgattctgaagagtgtgcctggatacaggcctgattcgtttacattctg
ggctgttccaccagggcattacaggtccaactacaaaaggaaaaacaaca
catggtactgaacttagataaattttctttgtttttgatttttttgtttt
gttttgtttatttgtttgaggggggcattgcttttttgtttgtgtgtttg
tttttacttctgtacagcaccactgttaaaatggattggtgtttgactga
taaatgtaataagtctaataccttgaataatataaatgccaactaagctg
ccttggctcctacttaagtgttttgtttcttgtttgtttgtttgcttgtt
tgttttgttttgttttttcaggttggaaaaggatgtgttttttaaagaaa
attctgtcttattttatattttaattatttgctttaatggtttttgaaat
tttcatatatgtatataatgtatcttggcattccgtcccttccttccttc
ctccagctccctctgtctgcctcccaacataacccccaacttcatatttt
tttaataaaataataccatatttgcaattgttgctgccaacacacacgtg
tgtgtgtgtggtgtcactggaatatggacaacctaccaaaggctgtcccc
aaaggaaagtgaacctctctcagaagctttcaagggccttagctcttcag
gggtggggtgtagagaatgcatctcccatccatgctgggatcttgaacac
tcttgtttaagcacagctgctatgtgtttatatgcaacagcaatgccatg
tctagtgtcagcttttcatagcaaacttgctgtcttccacctcattattc
attctgccaccttctaccatttcctgagccctttgatgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43100426_43101610
seq2: B6Ng01-052C18.b_45_1216

seq1  GAATTCCAATATAGGATATCTTAGGAATAGTGAAACAGCATAGAATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATAGGATATCTTAGGAATAGTGAAACAGCATAGAATTGAA  50

seq1  TGTTTTTAAAGACAGAGTAATACATGTCGTAACTTTTCAAAGTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAGACAGAGTAATACATGTCGTAACTTTTCAAAGTAAATATT  100

seq1  AAAACTTCCAATTATAAGATACATTTATTGTAGAAATTTTTAGACTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCCAATTATAAGATACATTTATTGTAGAAATTTTTAGACTAATT  150

seq1  ATAAAGCCATACTACATAACTATGATACTCATAAAACTAGAATATGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCATACTACATAACTATGATACTCATAAAACTAGAATATGCAAT  200

seq1  ACGTGGTCAGATAAAAGCTTTTTGTAAAGCTTAGGAAGGTTTGTAACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTCAGATAAAAGCTTTTTGTAAAGCTTAGGAAGGTTTGTAACCCC  250

seq1  CTAAAGGTTCACGTGCACTACCCTGGCTGAACTCCATGTCATTACAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTTCACGTGCACTACCCTGGCTGAACTCCATGTCATTACAGTTG  300

seq1  GCTCTTCATAGCAACCTGCTTTCAAGCGTGGATATACTAGAAGAGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCATAGCAACCTGCTTTCAAGCGTGGATATACTAGAAGAGTTTCA  350

seq1  ATATCTGGATTTCCAGCAGTTACCTTAAGTTTCCATGTCTTAGGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGATTTCCAGCAGTTACCTTAAGTTTCCATGTCTTAGGAAAATG  400

seq1  GCACGTTCACTCACTGACCAGCAACAATAAATTTACTGTGCTGGGACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTTCACTCACTGACCAGCAACAATAAATTTACTGTGCTGGGACTCT  450

seq1  AACATGACACTAAATCTTCATTCTCAAAATTCACTCCCAGCAGTAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACACTAAATCTTCATTCTCAAAATTCACTCCCAGCAGTAACAAA  500

seq1  TGATATGAATAACCGGCTCTTTTCATGTACCTGTAATCATACCAGGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAATAACCGGCTCTTTTCATGTACCTGTAATCATACCAGGCTTC  550

seq1  TGGCTTTACAATCCTAGCTTAAGCTGTTTATATTCTCAAAGTAATCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACAATCCTAGCTTAAGCTGTTTATATTCTCAAAGTAATCAACT  600

seq1  TTTGCTCTCCTAAATCTCTGGTAACATCCAAGGTAAAAGCGATGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCCTAAATCTCTGGTAACATCCAAGGTAAAAGCGATGGAATTT  650

seq1  TCTGATAAGTCACTCCAAGTTTAACATCAATGATTACCTTCAGTACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAGTCACTCCAAGTTTAACATCAATGATTACCTTCAGTACACTG  700

seq1  GCAAGCAAATCACAGCTTATCCATAAGTGAAAAACTCATTGCAAATGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAATCACAGCTTATCCATAAGTGAAAAACTCATTGCAAATGAGG  750

seq1  GGAAAAGAAAAATAATGTTTTAAATCTAGCTTAGGAATAAAGAGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAAAAATAATGTTTTAAATCTAGCTTAGGAATAAAGAGAAAACA  800

seq1  TCTGTTTCCTTGAAGGAAGGATGGTGGGTAGTATTAAAAAGTTCCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTTGAAGGAAGGATGGTGGGTAGTATTAAAAAGTTCCCTGTG  850

seq1  CAATTTTAGTGTAGGAGATGAGTAACATCGATCCGCCCTTTGAACTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAGTGTAGGAGATGAGTAACATCGATCCGCCCTTTGAACTACCC  900

seq1  CAAACAGGTAAGCTGGATTTCACTGAAGGCACCAAAAACAACATGGTCCA  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CAAACAGGTAAGCTGGATTTCACTGAAAGCACCAAAAAC-ACATGGTCCA  949

seq1  AGTGGTTTTCTTTGTGACATAGAAAACTAAAGGAAAAAAAGCAACAGAAA  1000
      |||||||||||||||||||||| ||||||| |   |||||||||||||||
seq2  AGTGGTTTTCTTTGTGACATAG-AAACTAAGG---AAAAAGCAACAGAAA  995

seq1  ATAAAGAAATGTAAGATTGGAAGACAGAAAGTCCCTGTCTTAACCAGACT  1050
      || ||||||||| ||||||||||| || |||| |||||||||||||||||
seq2  AT-AAGAAATGTTAGATTGGAAGAAAG-AAGT-CCTGTCTTAACCAGACT  1042

seq1  TTAACTTCTAGGATAAAGTAGACAAACCACTGGCTTTGCGAACTTGTTCA  1100
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TTAACTTCTAGGATAAAGTAGAC-AACCACTGGCTTTGCG-ACTTGTTCA  1090

seq1  TCAATCCAGTGAGTAAT-AAATTATAACTTCTCAGATAAAAGGCTAGGTA  1149
      || || ||| | ||||| |||||  |||| | ||||||||||||| ||||
seq2  TC-ATTCAG-GGGTAATAAAATTTAAACTCCCCAGATAAAAGGCT-GGTA  1137

seq1  AGAGCCTTTTGATTACTTTAGAAAGTAC-CTACTACT  1185
      |||| | ||||| |||||| ||||| || ||||||||
seq2  AGAGGC-TTTGA-TACTTTTGAAAGGACTCTACTACT  1172

seq1: chr15_43225218_43226264
seq2: B6Ng01-052C18.g_67_1108 (reverse)

seq1  GTCTCATCAAAAGGCTCAGGAAATGGTACAGAAGGTGGGCAGAATGAATA  50
      ||||||||||| |||||||||||||||  ||||||| |||||||||||||
seq2  GTCTCATCAAAGGGCTCAGGAAATGGT--AGAAGGT-GGCAGAATGAATA  47

seq1  GATGAGGTGGAGGACAGCAAAGTTTGCTATGAAATGCTGACCACTAGACA  100
       |||||||||| |||||| ||||||||||||||| ||||| |||||||||
seq2  -ATGAGGTGGAAGACAGC-AAGTTTGCTATGAAAAGCTGA-CACTAGACA  94

seq1  TGGCATTGCTGTTGCATATAAACACATAGCAGCTGTGCTTAAACAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCTGTTGCATATAAACACATAGCAGCTGTGCTTAAACAAGAGT  144

seq1  GTTCAAGATCCCAGCATGGATGGGAGATGCATTCTCTACACCCCACCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGATCCCAGCATGGATGGGAGATGCATTCTCTACACCCCACCCCT  194

seq1  GAAGAGCTAAGGCCCTTGAAAGCTTCTGAGAGAGGTTCACTTTCCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTAAGGCCCTTGAAAGCTTCTGAGAGAGGTTCACTTTCCTTTGG  244

seq1  GGACAGCCTTTGGTAGGTTGTCCATATTCCAGTGACACCACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTTTGGTAGGTTGTCCATATTCCAGTGACACCACACACACACA  294

seq1  CGTGTGTGTTGGCAGCAACAATTGCAAATATGGTATTATTTTATT-AAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGTGTGTGTTGGCAGCAACAATTGCAAATATGGTATTATTTTATTAAAAA  344

seq1  AATATGAAGTTGGGGGTTATGTTGGGAGGCAGACAGAGGGAGCTGGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGTTGGGGGTTATGTTGGGAGGCAGACAGAGGGAGCTGGAGGA  394

seq1  AGGAAGGAAGGGACGGAATGCCAAGATACATTATATACATATATGAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGGACGGAATGCCAAGATACATTATATACATATATGAAAAT  444

seq1  TTCAAAAACCATTAAAGCAAATAATTAAAATATAAAATAAGACAGAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACCATTAAAGCAAATAATTAAAATATAAAATAAGACAGAATTT  494

seq1  TCTTTAAAAAACACATCCTTTTCCAACCTGAAAAAACAAAACAAAACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAACACATCCTTTTCCAACCTGAAAAAACAAAACAAAACAAA  544

seq1  CAAGCAAACAAACAAACAAGAAACAAAACACTTAAGTAGGAGCCAAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAACAAACAAACAAGAAACAAAACACTTAAGTAGGAGCCAAGGCA  594

seq1  GCTTAGTTGGCATTTATATTATTCAAGGTATTAGACTTATTACATTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTGGCATTTATATTATTCAAGGTATTAGACTTATTACATTTATC  644

seq1  AGTCAAACACCAATCCATTTTAACAGTGGTGCTGTACAGAAGTAAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACACCAATCCATTTTAACAGTGGTGCTGTACAGAAGTAAAAACA  694

seq1  AACACACAAACAAAAAAGCAATGCCCCCCTCAAACAAATAAACAAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAACAAAAAAGCAATGCCCCCCTCAAACAAATAAACAAAACAA  744

seq1  AACAAAAAAATCAAAAACAAAGAAAATTTATCTAAGTTCAGTACCATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAATCAAAAACAAAGAAAATTTATCTAAGTTCAGTACCATGTG  794

seq1  TTGTTTTTCCTTTTGTAGTTGGACCTGTAATGCCCTGGTGGAACAGCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCCTTTTGTAGTTGGACCTGTAATGCCCTGGTGGAACAGCCCA  844

seq1  GAATGTAAACGAATCAGGCCTGTATCCAGGCACACTCTTCAGAATCAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAACGAATCAGGCCTGTATCCAGGCACACTCTTCAGAATCAGAT  894

seq1  GAACTCCTTTTCTCTCAGCTTTAACAGCTTATATTTCATCCTTTCCTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTTTCTCTCAGCTTTAACAGCTTATATTTCATCCTTTCCTTGA  944

seq1  GCATCACCACACACAGAAAAGTCCAGACTCCAGAACTAGACTTCCTATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCACACACAGAAAAGTCCAGACTCCAGAACTAGACTTCCTATGA  994

seq1  GTAAGTCATGTTTAACTCCCTTGCAGGTTGTGGGGCTCTTATGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCATGTTTAACTCCCTTGCAGGTTGTGGGGCTCTTATGAATTC  1042