BAC Information

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BAC

Clone NameB6Ng01-052G15
Chromosome15 (Build37)
Map Location 102,419,818 - 102,420,178
singlet/doubletsinglet
Overlap geneAtf7
Upstream geneEG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052G15.bB6Ng01-052G15.g
ACCDH875777DH875778
length9441,065
definitionDH875777|Mus musculus domesticus DNA, BAC clone: B6Ng01-052G15, 5' end.DH875778|Mus musculus domesticus DNA, BAC clone: B6Ng01-052G15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagaaggtaagacacaccagatgtgggcttatcagagagag
cctcactgcatggtaatgacagtcaccatataaaccaatttaatgagttt
caaagctattctcttccaaatattgccagggaatttaaataagatcacag
ggtggtttttgagaaacacctgacagaatcataagttttcaactctagat
cacagggaaacaagaagttaaggttactttgtaaacaaagttattcatca
tatttgtgagtccctactgcaagaaccccctcccccccaaaaaaaaagga
aaaataaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagg
aaggaaggaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaa
gaaagaaagagaatagaaaagaagaaagaaaagaaaagaaaaaagaaaaa
agaagaaaaaagaaaaaagaaaagaaaagaaaagaataagaaaaatgtct
ggaagaataatgggaaacttattttattttctccattgaatttctctctc
tctctatctatctatatatatatataattttttattaggtattttcttca
tttacattcccagtgctatcccaaaagtcccccataccctcccctcccac
tccactccacccactcccactttcttgaccctggagttctcctgtactga
ggcatacaaagtttgcacgaccaatgggcctctctttccacttgatggcc
aactaggccatcttctgatacatatgcagctagagacacgagctccaggg
gtactggttagttcatatttgttgttccacttatagggttgcagattcct
ctttagcttcttgggtactttctctagctcctcattggggaccctgtgat
ccatccaatagtgattgtgagcattccacttctgtggtttgcta
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaacactgagat
tccatctcacacaagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaagaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaatgggtaagaaggacatatggtccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
tcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcgcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaggatataagatacaatttgctaaacgcatgaaattcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggaa
acactcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagggatccatcccataatt
agcctccatcgatgacaccattgcatacactagcaagtgtttgttgcaag
gaccttgatatagctgtctcttgtgaaactcggccagggcctagcgaaca
cagaattcgatgctcacagtcactattggatggatccacagggcccccaa
tggagagcagagaaagtattcaaggagctaagagacggcaccctgtagtg
gcacaacttctgactaccgtacccggagtcttgacttctgctgcatagtt
taaaagatggtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102419818_102420178
seq2: B6Ng01-052G15.b_623_987

seq1  -TTTTTTAGGTATTTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGT  49
       ||| ||||||| ||||||||||||||||| | | |||||||||||||||
seq2  TTTTATTAGGTA-TTTTCTTCATTTACATTCCCAGTGCTATCCCAAAAGT  49

seq1  CCCCCATACCCTCCCC------------CCACCCACTCCCAC-TTCTTGG  86
      ||||||||||||||||            |||||||||||||| |||||| 
seq2  CCCCCATACCCTCCCCTCCCACTCCACTCCACCCACTCCCACTTTCTTGA  99

seq1  CCCTGGCGTTCCCCTATACTGAGGCATATAAAGTTTGCAAGACCAAGGGG  136
      |||||| |||| ||| |||||||||||| |||||||||| |||||| |||
seq2  CCCTGGAGTTCTCCTGTACTGAGGCATACAAAGTTTGCACGACCAATGGG  149

seq1  CCTCTCTTTCCA-ATGATGGCCAACTAGGCCATCTTCTGATACATATGCA  185
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCACTTGATGGCCAACTAGGCCATCTTCTGATACATATGCA  199

seq1  GCTAGAGACACGAGCTCGGGGTGGGGGGTGGGGGGTAACTGGTTAGTTCA  235
      |||||||||||||||||              ||||| |||||||||||||
seq2  GCTAGAGACACGAGCTC------------CAGGGGT-ACTGGTTAGTTCA  236

seq1  TA-TTGTTGTTCCACCTATAGGGTTGCAGA--CCCCTTTAGCTCCTTGGG  282
      || |||||||||||| ||||||||||||||  || |||||||| ||||||
seq2  TATTTGTTGTTCCACTTATAGGGTTGCAGATTCCTCTTTAGCTTCTTGGG  286

seq1  TACTTTCTCTAGTTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTG  332
      |||||||||||| |||| |||||||| |||||||||||||||||||| ||
seq2  TACTTTCTCTAGCTCCT-CATTGGGGACCCTGTGATCCATCCAATAG-TG  334

seq1  ACTGTGAGCA-TCCACTTCTGT-GTTTGCTA  361
      | |||||||| ||||||||||| ||||||||
seq2  ATTGTGAGCATTCCACTTCTGTGGTTTGCTA  365