BAC Information

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BAC

Clone NameB6Ng01-053H24
Chromosome15 (Build37)
Map Location 27,445,089 - 27,608,555
singlet/doubletdoublet
Overlap geneAnk, BC087945, LOC100040622, BC052328
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H24.bB6Ng01-053H24.g
ACCDH876531DH876532
length1,1001,058
definitionDH876531|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H24, 5' end.DH876532|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,607,467 - 27,608,555)(27,445,089 - 27,446,153)
sequence
gaattcagaaggtgagcatgcctgcgcccagggagagaggcgaactggaa
cagttagtatcagccgagaaaggagtgatgcccacagtgtgtgtgaactt
tacgtccacagggactacgggggatgggcgtttatactggagctcctctg
gccttggggagctgcttggtaagcagggggctcaggcagttagtaactgt
cctgaggggtgcaagtagctgttcccaagtcctgctctaaggaagagaga
aatattttccttctttgaaaaaaaaagatggtttaaggatttgcagctac
attatacacatacagactcacaggcagacacacagatatacagacagact
cacacacatgtttttaaaccaaagatctatagttgatatgttttgctatt
tgtttgctccacttttagacttctcttatttctatggaatgactagccaa
tggcatgtaatttttttttttaaagcggatgtgttatctaggtagagatt
ctttactggtgtagttattaaaggaaaaatgtcttcttgagttatccagt
agactttggttcaccagagagaacttctctggctctcaggtgggttgagc
accctggctggcttgtccagagtcgtcgtgcttgtctcttcccagttgtg
gtgggtactcactgtgttctttgggtgctgcgtagggagatgctggcaac
agaggcaaaagagttctgtgtgattctccccgctctcattcggtggtgct
tagagccattgtggctatgtggatggcttccagttccaagtcactctagg
aggcaggcaccggcccaggtctttacttatggcagattcttagccatcca
tctgcctgctcatcttctaaaacagtccttgccattgactaaggaggctt
gcagttcctagtgagagcttcttcagctcactggacctgttcttcagcag
aagaacctaggctgtcatttttatgccactgtatttgactgagatgacct
tacaggctggggttgcaagaaagaagagaacctgttaaaactttgtcttt
ttcttccaaagattcccatgggccctcacaggtcctttctatgtgagctc

gaattctcttttgtatcactctaaattatacctatgcactgaaaagtggg
ctgtgctaataaggacctatgtaatcccatacaaataggaccaggatgac
tatgctgaataaaaaccagatcagtacaatgctgattctgttcctgtagg
cagcccttggtcttggtggtttcgtagttatgtcgctttgtcgcagcaag
tctctttcttggtagactgccagttacttgagaatagagttgtactttct
tcatgtggaaataaagaagagttcagggggaaaaaatggctatggtactt
aagggtgaccccattcaggactattgtggagttgcccgggtaattccagg
gggatgtttaacttgtccgaaggcaaaagagaaggaaggactcagatcaa
ggagcagagtgatgggtagatggcctggacttgctgggagaaaggttctg
taagcaggagctgcttgctaagccagcctgggtgccctgaaggtgaccat
tgccggaagggtaagcggtgaggaacttgatccaatgatgtcacaagtac
tcctatgttggcttcagggttccatcaggattcttgttacaactagagta
gccaggctgaaggtggcactctggaacatgtaggcaagagggcctcgaat
ttggtcaatgagtctttgtctcctgaagaccaccgtgtggtcagcatttt
aaaataaccatttgggcaggttctgcagacacctgtgtgtagcatttcga
gagcaggaagcactactggactctatggttgtaggcaaggaacccagggg
atgtgaaatacaatgagggcagtgggcgaggctggagaacacagtccatc
tatggccattcggagggacaagagcctagggcacacagtattggagacac
acagttccttaacccaagcaaagaatggggcatgacagaaaatggctctc
actctgaacgattcgcctcaattttgacactcgagttgctgtatctagga
agaaactaagaagttgaattctcattttacttcaaggaacataaaaaaaa
tttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_27607467_27608555
seq2: B6Ng01-053H24.b_46_1145 (reverse)

seq1  GAGCT-ACATAGAAAGAACCGTAGAG---CCATGGGAATC-TTGGAAG-A  44
      ||||| |||||||||| |||   |||   ||||||||||| ||||||| |
seq2  GAGCTCACATAGAAAGGACCTGTGAGGGCCCATGGGAATCTTTGGAAGAA  50

seq1  AAAGACAAAGTTTT-ACAGTTTCTCTCTTTTCTTGCACACCCAGCCTGTA  93
      |||||||||||||| |||| ||||||  |||||||||  |||||||||||
seq2  AAAGACAAAGTTTTAACAGGTTCTCTTCTTTCTTGCAACCCCAGCCTGTA  100

seq1  A-GTCATCTCAGTC-AATACAGTGGCATAAAAATGACAGCCTAGGTTC-T  140
      | |||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  AGGTCATCTCAGTCAAATACAGTGGCATAAAAATGACAGCCTAGGTTCTT  150

seq1  CTGCTG-AGAACAGGTCCAGTGAGCTGAAGAAGCTCTCACTAGGAACTGC  189
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAGAACAGGTCCAGTGAGCTGAAGAAGCTCTCACTAGGAACTGC  200

seq1  AAGGCCTCCTTAGTCAATGGC-AGGACTGTTTTAGAAGATGAGCAGGCAG  238
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AA-GCCTCCTTAGTCAATGGCAAGGACTGTTTTAGAAGATGAGCAGGCAG  249

seq1  ATGGATGGCTAAGAATCTGCCATAAGTAAAGACCTGGGCCGGTGCCTGCC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGCTAAGAATCTGCCATAAGTAAAGACCTGGGCCGGTGCCTGCC  299

seq1  TCCTAGAGTGACTTGGAACTGGAAGCCATCCACATAGCCACAATGGCTCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGTGACTTGGAACTGGAAGCCATCCACATAGCCACAATGGCTCT  349

seq1  AAGCACCACCGAATGAGAGCGGGGAGAATCACACAGAACTCTTTTGCCTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCACCGAATGAGAGCGGGGAGAATCACACAGAACTCTTTTGCCTC  399

seq1  TGTTGCCAGCATCTCCCTACGCAGCACCCAAAGAACACAGTGAGTACCCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCAGCATCTCCCTACGCAGCACCCAAAGAACACAGTGAGTACCCA  449

seq1  CCACAACTGGGAAGAGACAAGCACGACGACTCTGGACAAGCCAGCCAGGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTGGGAAGAGACAAGCACGACGACTCTGGACAAGCCAGCCAGGG  499

seq1  TGCTCAACCCACCTGAGAGCCAGAGAAGTTCTCTCTGGTGAACCAAAGTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACCCACCTGAGAGCCAGAGAAGTTCTCTCTGGTGAACCAAAGTC  549

seq1  TACTGGATAACTCAAGAAGACATTTTTCCTTTAATAACTACACCAGTAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATAACTCAAGAAGACATTTTTCCTTTAATAACTACACCAGTAAA  599

seq1  GAATCTCTACCTAGATAACACATCCGCTTTAAAAAAAAAAATTACATGCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTACCTAGATAACACATCCGCTTTAAAAAAAAAAATTACATGCC  649

seq1  ATTGGCTAGTCATTCCATAGAAATAAGAGAAGTCTAAAAGTGGAGCAAAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTAGTCATTCCATAGAAATAAGAGAAGTCTAAAAGTGGAGCAAAC  699

seq1  AAATAGCAAAACATATCAACTATAGATCTTTGGTTTAAAAACATGTGTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAAACATATCAACTATAGATCTTTGGTTTAAAAACATGTGTGT  749

seq1  GAGTCTGTCTGTATATCTGTGTGTCTGCCTGTGAGTCTGTATGTGTATAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTCTGTATATCTGTGTGTCTGCCTGTGAGTCTGTATGTGTATAA  799

seq1  TGTAGCTGCAAATCCTTAAACCATCTTTTTTTTTCAAAGAAGGAAAATAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGCAAATCCTTAAACCATCTTTTTTTTTCAAAGAAGGAAAATAT  849

seq1  TTCTCTCTTCCTTAGAGCAGGACTTGGGAACAGCTACTTGCACCCCTCAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCTTAGAGCAGGACTTGGGAACAGCTACTTGCACCCCTCAG  899

seq1  GACAGTTACTAACTGCCTGAGCCCCCTGCTTACCAAGCAGCTCCCCAAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTACTAACTGCCTGAGCCCCCTGCTTACCAAGCAGCTCCCCAAGG  949

seq1  CCAGAGGAGCTCCAGTATAAACGCCCATCCCCCGTAGTCCCTGTGGACGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAGCTCCAGTATAAACGCCCATCCCCCGTAGTCCCTGTGGACGT  999

seq1  AAAGTTCACACACACTGTGGGCATCACTCCTTTCTCGGCTGATACTAACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCACACACACTGTGGGCATCACTCCTTTCTCGGCTGATACTAACT  1049

seq1  GTTCCAGTTCGCCTCTCTCCCTGGGCGCAGGCATGCTCACCTTCTGAATT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTTCGCCTCTCTCCCTGGGCGCAGGCATGCTCACCTTCTGAATT  1099

seq1  C  1089
      |
seq2  C  1100

seq1: chr15_27445089_27446153
seq2: B6Ng01-053H24.g_68_1125

seq1  GAATTCTCTTTTGTATCACTCTAAATTATACCTATGCACTGAAAAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGTATCACTCTAAATTATACCTATGCACTGAAAAGTGGG  50

seq1  CTGTGCTAATAAGGACCTATGTAATCCCATACAAATAGGACCAGGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAATAAGGACCTATGTAATCCCATACAAATAGGACCAGGATGAC  100

seq1  TATGCTGAATAAAAACCAGATCAGTACAATGCTGATTCTGTTCCTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAATAAAAACCAGATCAGTACAATGCTGATTCTGTTCCTGTAGG  150

seq1  CAGCCCTTGGTCTTGGTGGTTTCGTAGTTATGTCGCTTTGTCGCAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTGGTCTTGGTGGTTTCGTAGTTATGTCGCTTTGTCGCAGCAAG  200

seq1  TCTCTTTCTTGGTAGACTGCCAGTTACTTGAGAATAGAGTTGTACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTGGTAGACTGCCAGTTACTTGAGAATAGAGTTGTACTTTCT  250

seq1  TCATGTGGAAATAAAGAAGAGTTCAGGGGGAAAAAATGGCTATGGTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGAAATAAAGAAGAGTTCAGGGGGAAAAAATGGCTATGGTACTT  300

seq1  AAGGGTGACCCCATTCAGGACTATTGTGGAGTTGCCCGGGTAATTCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGACCCCATTCAGGACTATTGTGGAGTTGCCCGGGTAATTCCAGG  350

seq1  GGGATGTTTAACTTGTCCGAAGGCAAAAGAGAAGGAAGGACTCAGATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTTAACTTGTCCGAAGGCAAAAGAGAAGGAAGGACTCAGATCAA  400

seq1  GGAGCAGAGTGATGGGTAGATGGCCTGGACTTGCTGGGAGAAAGGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAGTGATGGGTAGATGGCCTGGACTTGCTGGGAGAAAGGTTCTG  450

seq1  TAAGCAGGAGCTGCTTGCTAAGCCAGCCTGGGTGCCCTGAAGGTGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGAGCTGCTTGCTAAGCCAGCCTGGGTGCCCTGAAGGTGACCAT  500

seq1  TGCCGGAAGGGTAAGCGGTGAGGAACTTGATCCAATGATGTCACAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAAGGGTAAGCGGTGAGGAACTTGATCCAATGATGTCACAAGTAC  550

seq1  TCCTATGTTGGCTTCAGGGTTCCATCAGGATTCTTGTTACAACTAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTTGGCTTCAGGGTTCCATCAGGATTCTTGTTACAACTAGAGTA  600

seq1  GCCAGGCTGAAGGTGGCACTCTGGAACATGTAGGCAAGAGGGCCTCGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGAAGGTGGCACTCTGGAACATGTAGGCAAGAGGGCCTCGAAT  650

seq1  TTGGTCAATGAGTCTTTGTCTCCTGAAGACCACCGTGTGGTCAGCA-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGGTCAATGAGTCTTTGTCTCCTGAAGACCACCGTGTGGTCAGCATTTT  700

seq1  AAAATAACCATTTGGGCAGGTTCTGCAGACACCTGTGTGTAGCATTTCGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCATTTGGGCAGGTTCTGCAGACACCTGTGTGTAGCATTTCGA  750

seq1  GAGCAGGAAGCACTACTGGACTCTATGGTTGTAGGCAAGGAACCCAGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGCACTACTGGACTCTATGGTTGTAGGCAAGGAACCCAGGGG  800

seq1  ATGTGAAATACAATGAGGGCAGTGGGCGAGGCTGGAGAACACAGTCCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATACAATGAGGGCAGTGGGCGAGGCTGGAGAACACAGTCCATC  850

seq1  TATGGCCATTCGGAGGGACAAGAGCCTAGGGCACACAGTATTGGAGACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCATTCGGAGGGACAAGAGCCTAGGGCACACAGTATTGGAGACAC  900

seq1  ACAGTTCCTTAACCCAAGCAAAGAATGGGGCATGACAGAAAATGGCTC-C  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGTTCCTTAACCCAAGCAAAGAATGGGGCATGACAGAAAATGGCTCTC  950

seq1  ACTCGGAACGATTCGCCTCAATTTTGACACTCGAGTTGCTTATATCTAGG  998
      |||| |||||||||||||||||||||||||||||||||| | ||||||||
seq2  ACTCTGAACGATTCGCCTCAATTTTGACACTCGAGTTGC-TGTATCTAGG  999

seq1  GAAAGAAAACTAAGAAAGTTTGAATTCTCATTTTACTTCAAGGAAACATT  1048
        ||| ||||||||||   |||||||||||||||||||||||| ||||| 
seq2  --AAG-AAACTAAGAA--GTTGAATTCTCATTTTACTTCAAGG-AACAT-  1042

seq1  AAACAAAAATTTGTTTT  1065
       || |||||||||||||
seq2  -AAAAAAAATTTGTTTT  1058