BAC Information

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BAC

Clone NameB6Ng01-054D22
Chromosome1 (Build37)15 (Build37)
Map Location 177,163,896 - 177,164,43221,673,378 - 21,674,556
singlet/doubletsingletsinglet
Overlap geneRgs7
Upstream geneSpna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054D22.bB6Ng01-054D22.g
ACCDH877044DH877045
length1,0021,154
definitionDH877044|Mus musculus domesticus DNA, BAC clone: B6Ng01-054D22, 5' end.DH877045|Mus musculus domesticus DNA, BAC clone: B6Ng01-054D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(177,163,896 - 177,164,432)(21,673,378 - 21,674,556)
sequence
gaattcctcttggaggattttacctttgttgagtatgaagtgcccctcct
tgtcttttttgataactttgggttggaagtcgattttatctgatattaga
atggctactccagcttgtttcttcagaccattagcttggaaaattgtttt
caagcctttcattctgaggtagtgtctgtctttttccctgagatgggttt
cctgtaagcagcagaatgttgggtcttgtttgtgtagccagtctgttagt
ctaggtctttttattggggaattgagtccattgatattaagagatattaa
ggaaaagtaattgttgctgccttttatttttcttgttagagttggcattg
tgttcttgtggctctcttctttttggtttgttgggggattactttcttgc
ttgttctagggcgtgatttctgtccttgtattgcttcttttctgttatta
tcctttgaagggctggattcatggaacgatattgtgtgaatttggttttg
tcgtggaatactttggtttctccatctatggtaattgacagtttggctgg
gtatattagcctgggctggcatttgtgttctcttagtgtctgtataacat
ctgtccaggctcttctggctttcatagtctctggtgaaaagtctggtgta
attctgataggccttccttcatatgtttcttgacctttctcccttactgc
ttttaatattctatctttatttagtgcatttgttgttctgatttttatgt
gtcaggaggaatttcttttctggtccagtctatttggagttctgtaggct
tcttgtatgatcatgggcatctctttctttatgtttgtgaagttttcttt
tattattttgttgaagatattagctggccctttaagttgaaaatcttcat
tctcatcaattcctattatccgtaggtttggtcttctcattgtgtcctgg
atttcctggatgttttgagttaggatccttttgcattttgtatttttctt
tg
gaattctctgtgtttcctgtattctctggttttgctaccctgatggggta
cctaataatatccagtactttaatggcttcttgaccttaagaactagaat
taaaataatttgaataacatatttattaatttaaccagtactatctcaca
tgagatgagattatttatctttccctagactttaaaacaaaatttgtgtc
tgtctttgatagatagaatgtgacagtgaggatgcagtgttatggaatat
tgttatgacttttggaagccaggctagagtattaaataatgtaaaaacac
aggcaaagaaacattgaaaagtgaaagactattcataagtgatcatccag
ctggatggagttatacaaacgatccccacagagataacagttcaaagcta
gctctatatttctcaaaacatcttgaagaagaactggctattatcatcct
ttattttattagggagggacaatgagacaagctacttaaaacctgtgatt
aagaataggtaagattactctcaggaataagttggcaggaacaggtaggt
ctgttttgtcagggctcagatgttcattattccctactttgacagagata
tttgtctaagggaaaaattgtttaaaatgcttaagcaaatatttcatgtc
ttataacaattcctgtcagtcatcctgtccaccatatacgtacaagtagt
caatcttccagttatgtttctcacatggtggtatgaaacgtgagaattca
atatggtataaccagttaactcgataggacaggagtgggggctttttagg
acatcaatatggatgttgcaccttggaaacacaattcatgaaaatatttg
aaaattggtggtgaataatgtggcacagtgaaacaggaagagacgttcca
atttatgaacacaaatttactctgcaattggaaacataaagattcacaaa
gctttctgaagaaaatgcctggaattatttatataaacttgatcaaatgc
taaatgttagtacataacttttggttggtttgttttgtgttgtttttcta
aatcagaggcaatattttgtaaagtctttccaattcttggaagcattaaa
ggcagcaattaaggttataaattccatggagtgacaatggtctaggcata
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177163896_177164432
seq2: B6Ng01-054D22.b_44_580 (reverse)

seq1  TCTCAATTACCATAAATGGAGAAACCAAAGTATTCCATGACAAATCCAAA  50
      | |||||||||||| |||||||||||||||||||||| |||||| |||||
seq2  TGTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAA  50

seq1  TTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA  100
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TTCACACAATATCGTTCCATGAATCCAGCCCTTCAAAGGATAATAACAGA  100

seq1  AAAGAAGCAATACAAGGACTGAAATCACGCCCTAGAACAAGCAAGAAAGT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGAAGCAATACAAGGACAGAAATCACGCCCTAGAACAAGCAAGAAAGT  150

seq1  AATCCCTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAAC  200
      |||||| ||||||||||||||||||| ||||||||||||| |||||||||
seq2  AATCCCCCAACAAACCAAAAAGAAGAGAGCCACAAGAACACAATGCCAAC  200

seq1  TCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTC  250
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TCTAACAAGAAAAATAAAAGGCAGCAACAATTACTTTTCCTTAATATCTC  250

seq1  TTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGAC  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAATATCAATGGACTCAATTCCCCAATAAAAAGACCTAGACTAACAGAC  300

seq1  TGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCTACACAAACAAGACCCAACATTCTGCTGCTTACAGGAAACCCATCT  350

seq1  CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTT  400
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CAGGGAAAAAGACAGACACTACCTCAGAATGAAAGGCTTGAAAACAATTT  400

seq1  TCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCG  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAAGCTAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCA  450

seq1  GATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCA  500

seq1  CTTCATACTCATCAAAGGCAAAATCCTCCAAGAGGAA  537
      ||||||||||| |||||| ||||||||||||||||||
seq2  CTTCATACTCAACAAAGGTAAAATCCTCCAAGAGGAA  537

seq1: chr15_21673378_21674556
seq2: B6Ng01-054D22.g_67_1220

seq1  GAATTCTCTGTGTTTCCTGTATTCTCTGGTTTTGCTACCCTGATGGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTTTCCTGTATTCTCTGGTTTTGCTACCCTGATGGGGTA  50

seq1  CCTAATAATATCCAGTACTTTAATGGCTTCTTGACCTTAAGAACTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAATATCCAGTACTTTAATGGCTTCTTGACCTTAAGAACTAGAAT  100

seq1  TAAAATAATTTGAATAACATATTTATTAATTTAACCAGTACTATCTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTGAATAACATATTTATTAATTTAACCAGTACTATCTCACA  150

seq1  TGAGATGAGATTATTTATCTTTCCCTAGACTTTAAAACAAAATTTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGATTATTTATCTTTCCCTAGACTTTAAAACAAAATTTGTGTC  200

seq1  TGTCTTTGATAGATAGAATGTGACAGTGAGGATGCAGTGTTATGGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGATAGATAGAATGTGACAGTGAGGATGCAGTGTTATGGAATAT  250

seq1  TGTTATGACTTTTGGAAGCCAGGCTAGAGTATTAAATAATGTAAAAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGACTTTTGGAAGCCAGGCTAGAGTATTAAATAATGTAAAAACAC  300

seq1  AGGCAAAGAAACATTGAAAAGTGAAAGACTATTCATAAGTGATCATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAAACATTGAAAAGTGAAAGACTATTCATAAGTGATCATCCAG  350

seq1  CTGGATGGAGTTATACAAACGATCCCCACAGAGATAACAGTTCAAAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGAGTTATACAAACGATCCCCACAGAGATAACAGTTCAAAGCTA  400

seq1  GCTCTATATTTCTCAAAACATCTTGAAGAAGAACTGGCTATTATCATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATATTTCTCAAAACATCTTGAAGAAGAACTGGCTATTATCATCCT  450

seq1  TTATTTTATTAGGGAGGGACAATGAGACAAGCTACTTAAAACCTGTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTAGGGAGGGACAATGAGACAAGCTACTTAAAACCTGTGATT  500

seq1  AAGAATAGGTAAGATTACTCTCAGGAATAAGTTGGCAGGAACAGGTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGGTAAGATTACTCTCAGGAATAAGTTGGCAGGAACAGGTAGGT  550

seq1  CTGTTTTGTCAGGGCTCAGATGTTCATTATTCCCTACTTTGACAGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTCAGGGCTCAGATGTTCATTATTCCCTACTTTGACAGAGATA  600

seq1  TTTGTCTAAGGGAAAAATTGTTTAAAATGCTTAAGCAAATATTTCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAGGGAAAAATTGTTTAAAATGCTTAAGCAAATATTTCATGTC  650

seq1  TTATAACAATTCCTGTCAGTCATCCTGTCCACCATATACGTACAAGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAATTCCTGTCAGTCATCCTGTCCACCATATACGTACAAGTAGT  700

seq1  CAATCTTCCAGTTATGTTTCTCACATGGTGGTATGAAACGTGAGAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCAGTTATGTTTCTCACATGGTGGTATGAAACGTGAGAATTCA  750

seq1  ATATGGTATAACCAGTTAACTCGATAGGACAGGAGTGGGGGCTTTTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTATAACCAGTTAACTCGATAGGACAGGAGTGGGGGCTTTTTAGG  800

seq1  ACATCAATATGGATGTTGCACCTTGGAAACACAATTCATGAAAATATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATATGGATGTTGCACCTTGGAAACACAATTCATGAAAATATTTG  850

seq1  AAAATTGGTGGTGAATAATGTGGCACAGTGAAACAGGAAGAGACGTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTGGTGAATAATGTGGCACAGTGAAACAGGAAGAGACGTTCCA  900

seq1  ATTTATGAACACAAATTTACTCTGCAATTGGAAAACATTAAAGATTCCAC  950
      ||||||||||||||||||||||||||||||| ||||| |||||||| |||
seq2  ATTTATGAACACAAATTTACTCTGCAATTGG-AAACA-TAAAGATT-CAC  947

seq1  AAAGCTTTCTGAAGAAAATGCCTGGAATTATTTATATAAACTTGATCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTCTGAAGAAAATGCCTGGAATTATTTATATAAACTTGATCAAA  997

seq1  TGCTTAAATGTTTAGTAACATAACTTTTTGTTTTGTTTTGTTTT-TGTTG  1049
      ||| |||||| ||||| ||||||||||| |  ||| |||||||| |||||
seq2  TGC-TAAATG-TTAGT-ACATAACTTTTGG--TTGGTTTGTTTTGTGTTG  1042

seq1  TTTGTTTTTTCTTAAATTCAGATGCAATAATTTTGTTAAAGTTCTTCCAC  1099
           |||||||  || ||||| ||||| |||||| ||||||  ||||| 
seq2  -----TTTTTCT--AAATCAGAGGCAAT-ATTTTG-TAAAGTCTTTCCA-  1082

seq1  ATTCTTGAAAGCATTTAAAGGGCAGCAAATTAAAGTTATAAAAATTCACA  1149
      ||||||| |||||||  || |||||| |||||| |||||  |||||| ||
seq2  ATTCTTGGAAGCATT--AAAGGCAGC-AATTAAGGTTAT--AAATTC-CA  1126

seq1  T-GAGTGAACAATTTGTCTAGGCATTAAGAA  1179
      | ||||| |||| | ||||||||| ||||||
seq2  TGGAGTG-ACAA-TGGTCTAGGCA-TAAGAA  1154