BAC Information

Click to search

BAC

Clone NameB6Ng01-054H20
Chromosome15 (Build37)
Map Location 83,191,967 - 83,193,063
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
Downstream genePacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H20.bB6Ng01-054H20.g
ACCDH877219DH877220
length2301,076
definitionDH877219|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H20, 5' end.DH877220|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaggttgcacactgagttccagtagaccctgccaccaaa
gatggaagaaggaatgggatggggggaggggtggaagacagccgaactca
tcgtaggaaaggtcacctggttgtgggggcactcccttcattacaccact
caggaggcaaaaccgaagcgaaccctgaaaacccggctatgcctgacgac
tgagaaaactcgattaattgggaaaagcag
gaattcaatatgtagtccagactgccttcctggtgctgggacaaaggtgt
gtgtggtcaaacctggctgtttcgttttgtgttttgttttttagtagtct
gtaaaggcatgataggataatagccatataactcaatagataattatcaa
gaaagaggcacagttttgtatattctccttgtttaagaatatcagtcatc
ctattttatctgagactatggtcccagaatatttggaatatgttgcatgc
ccttgtctctttttaaaatgttgacagacttagttgctggggcaaattta
tttgtccagtttccttcctgtggtaatgttcatgatatgtggttaccatc
aagtatttgttgtcacaccacatgttttatgtggcacaagtcaaaatgtc
cttttgagtcaaatcccccttttcttatcctctcatctagaaattggtgt
tttggtatttcagtgattgtaaaagtatctgttttaggtagattttcaaa
aggtgaatttgttggatgaagtgtgtgtttatttttgtcattgctgtgga
ccaaatctctaacaaagacagtttaaggagaggctcacagtttcagtggg
tttgatgaatagtcacttggtctacatgcttgagcagactgtcatagtgg
caaggacaatgtggtagaagctttcaacccttgttgacagaggagataaa
agggaatgagcactggagtgacctgtgcaggtcccctataacaggatact
gtctgtgttcaggtcaacctttatatatgccttggagcctccagaaacct
ctctcttccttggctcaatcagaagggtcagctacaaaggccgctgtgcc
agggacccatttcagtttgaacctgggggtaaatggcgtagagcagagag
attttggtactgtgtggatgtgagctgtgggtgtctagggacagatcatc
cctctagttcccttgatgaccacagtgactagcagatgagtgaagtgctt
tggcaccaaggtgaagcaacaccctctggaagccagctatctggcctaaa
gctttactgctcaatatcttagccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83191967_83193063
seq2: B6Ng01-054H20.g_62_1137 (reverse)

seq1  ATGGCTAATGAATAATTTGGAAGCAGTAAAAGCACTCTATGGCACAGATA  50
      ||||||||   |||  |||  |||||||||    || || ||| ||||||
seq2  ATGGCTAA--GATA--TTG--AGCAGTAAA---GCTTTA-GGC-CAGATA  39

seq1  TGCTGGCTTTCAGAGTGTGTTTGCTTCACCTCTGGTGCCAAAGCACCTCA  100
       |||||||| ||||| ||| ||||||||||| |||||||||||||| |||
seq2  -GCTGGCTTCCAGAGGGTG-TTGCTTCACCT-TGGTGCCAAAGCACTTCA  86

seq1  CTCAACCCTGCTATGTCACTGTGGTCATCAAGGGAACTAGAGGGATGATT  150
      ||||   |||||| |||||||||||||||||||||||||||||||||| |
seq2  CTCA--TCTGCTA-GTCACTGTGGTCATCAAGGGAACTAGAGGGATGA-T  132

seq1  CTGTCCCTAGACAACCCACAGCTCACCATCCACACAGTACCAAAATCTCT  200
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CTGTCCCTAGAC-ACCCACAGCTCA-CATCCACACAGTACCAAAATCTCT  180

seq1  CTGCTCTACGCCATTTACCCCCAGGTTTCAAACTGAAATGGGTCCCTGGC  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCTCTACGCCATTTACCCCCAGG-TTCAAACTGAAATGGGTCCCTGGC  229

seq1  ACAGCGGCCTTTGTAGCTGACCCTTCTGATTGAGCCAAGGAAGAGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCCTTTGTAGCTGACCCTTCTGATTGAGCCAAGGAAGAGAGAGG  279

seq1  TTTCTGGAGGCTCCAAGGCATATATAAAGGTTGACCTGAACACAGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGGCTCCAAGGCATATATAAAGGTTGACCTGAACACAGACAGT  329

seq1  ATCCTGTTATAGGGGACCTGCACAGGTCACTCCAGTGCTCATTCCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTATAGGGGACCTGCACAGGTCACTCCAGTGCTCATTCCCTTTT  379

seq1  ATCTCCTCTGTCAACAAGGGTTGAAAGCTTCTACCACATTGTCCTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCTGTCAACAAGGGTTGAAAGCTTCTACCACATTGTCCTTGCCA  429

seq1  CTATGACAGTCTGCTCAAGCATGTAGACCAAGTGACTATTCATCAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAGTCTGCTCAAGCATGTAGACCAAGTGACTATTCATCAAACCC  479

seq1  ACTGAAACTGTGAGCCTCTCCTTAAACTGTCTTTGTTAGAGATTTGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTGTGAGCCTCTCCTTAAACTGTCTTTGTTAGAGATTTGGTCC  529

seq1  ACAGCAATGACAAAAATAAACACACACTTCATCCAACAAATTCACCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATGACAAAAATAAACACACACTTCATCCAACAAATTCACCTTTT  579

seq1  GAAAATCTACCTAAAACAGATACTTTTACAATCACTGAAATACCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTACCTAAAACAGATACTTTTACAATCACTGAAATACCAAAACA  629

seq1  CCAATTTCTAGATGAGAGGATAAGAAAAGGGGGATTTGACTCAAAAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCTAGATGAGAGGATAAGAAAAGGGGGATTTGACTCAAAAGGAC  679

seq1  ATTTTGACTTGTGCCACATAAAACATGTGGTGTGACAACAAATACTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACTTGTGCCACATAAAACATGTGGTGTGACAACAAATACTTGAT  729

seq1  GGTAACCACATATCATGAACATTACCACAGGAAGGAAACTGGACAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCACATATCATGAACATTACCACAGGAAGGAAACTGGACAAATAA  779

seq1  ATTTGCCCCAGCAACTAAGTCTGTCAACATTTTAAAAAGAGACAAGGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCCAGCAACTAAGTCTGTCAACATTTTAAAAAGAGACAAGGGCA  829

seq1  TGCAACATATTCCAAATATTCTGGGACCATAGTCTCAGATAAAATAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACATATTCCAAATATTCTGGGACCATAGTCTCAGATAAAATAGGAT  879

seq1  GACTGATATTCTTAAACAAGGAGAATATACAAAACTGTGCCTCTTTCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATATTCTTAAACAAGGAGAATATACAAAACTGTGCCTCTTTCTTG  929

seq1  ATAATTATCTATTGAGTTATATGGCTATTATCCTATCATGCCTTTACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATCTATTGAGTTATATGGCTATTATCCTATCATGCCTTTACAGA  979

seq1  CTACTAAAAAACAAAACACAAAACGAAACAGCCAGGTTTGACCACACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAAAACAAAACACAAAACGAAACAGCCAGGTTTGACCACACACA  1029

seq1  CCTTTGTCCCAGCACCAGGAAGGCAGTCTGGACTACATATTGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCCCAGCACCAGGAAGGCAGTCTGGACTACATATTGAATTC  1076