BAC Information

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BAC

Clone NameB6Ng01-054M23
Chromosome15 (Build37)
Map Location 100,427,974 - 100,564,887
singlet/doubletdoublet
Overlap geneDazap2, BC004728, Bin2, Ela1, Galnt6
Upstream geneAqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1
Downstream geneSlc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M23.bB6Ng01-054M23.g
ACCDH877452DH877453
length951493
definitionDH877452|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M23, 5' end.DH877453|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,563,934 - 100,564,887)(100,427,974 - 100,428,466)
sequence
gaattccaggccaacctgaactgcacaaaaccttgtctctcacatatata
aatacacatttctcttgattattgggtactttgccccctaaattttccac
ataagacaaatatctcatttgctatactctagtactgacctctacccagg
cttaaatcctcttataaccgtcaggctccccagtctgaccactgggatct
agaaaagagcgaaggcttgcctgtctttgtatctccgtgtacctgtgctc
acacagaggccagcacagcagacttcaacagtatttagaggccagatacg
gtggtaccccactgtttgaggcaggaggatgtaaccctgtgacagggcca
cagatcttagcacagttgaccccgtgatggaagcaccatccagagtgtga
aactcagcccgtagacagcaccacctgcaactaaaacagacctaatccac
ctaagtccacggctctgggaaagtctcagagcgtactaaccttgctttgg
cttctgtagttctgcttctagctaactgttcttgctaactgaaatgtgtc
aacagaatgtggtttttatccttaaagagaaaagacttggctacacaggg
atctcgttataacacccagtgtcctgctggccggggccggctaatagact
tcgtatcggtttaaactgtgtgtgcgcagtcatctctggtggacaccaca
gagcagctctaggccagcttgagttgtatataaataaaaaccctatttca
aagcaccaacaaccataacaaaacaatcttttaaaggaaggaaggaaaga
agaggaaggaaggaaggaaagaaagaaaggaaggaaggaaggaaggaaag
aaaaagccccccacaacactgttaggattagaaaggagtgttgttaatat
ttaacagagattaaagattaaaaaatatacaaaccgcacttgtttgggtt
t
acccttgtgcatgctaggtaagtgttgtaccattgcataccacatataac
agcgatttcttctgatttgtgacatgtatcttgtcctccatcatcagggt
gtgcctgtgtgagctgtgactgatggacagatggatataatactctctct
cctgagctctgggcccagattattttcttcctttcctttttttttttttt
ttttttttgtttgtttgttatgtttttcggtttgttttaggggatcagag
gttctttgtatatagaccaggctggcctcaaactcagagatccacctgct
tctgcctctgaagtgctgggatcaaagatgtgtgccaccaccgcctggct
tctttctttgcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cctcctcttcttcttcttcgtctgcttcttctgcttcttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100563934_100564887
seq2: B6Ng01-054M23.b_45_995 (reverse)

seq1  AAACCCAAAACAAAGTGCGGTTTGTTTATTTTTTTAATGCTTTTAGTCTC  50
      |||||||||   ||||||||||||| || |||||||||   |||| ||||
seq2  AAACCCAAA--CAAGTGCGGTTTGTATA-TTTTTTAAT--CTTTAATCTC  45

seq1  TGGTAAATAATAAACAACACTACCTTCTAATCCT-ACAGTGTTGTTGGTG  99
      || ||||| || ||||||||| | |||||||||| |||||||||| || |
seq2  TGTTAAAT-ATTAACAACACTCCTTTCTAATCCTAACAGTGTTGTGGGGG  94

seq1  GCTTTCTCCTTCCTTCCTTCCTTCCTTCC-TTCCTTCCTTCCTTCCTTCC  148
      ||||| || |||||||||||||||||||| ||| ||| ||||||||||||
seq2  GCTTTTTCTTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCCTTCC  144

seq1  TTCCTCTTCCTTCCTTCCTTCCTTT-AAAGATTGTTTTGTTATGGTTGTT  197
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCTCTTCTTTCCTTCCTTCCTTTAAAAGATTGTTTTGTTATGGTTGTT  194

seq1  GGTGCTTTGAAATAGGGTTTTTATTTATATACAACTCAAGCTGGCCTAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTGAAATAGGGTTTTTATTTATATACAACTCAAGCTGGCCTAGA  244

seq1  GCTGCTCTGTGGTGTCCACCAGAGATGACTGCGCACACACAGTTTAAACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGTGGTGTCCACCAGAGATGACTGCGCACACACAGTTTAAACC  294

seq1  GATACGAAGTCTATTAGCCGGCCCCGGCCAGCAGGACACTGGGTGTTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGAAGTCTATTAGCCGGCCCCGGCCAGCAGGACACTGGGTGTTATA  344

seq1  ACGAGATCCCTGTGTAGCCAAGTCTTTTCTCTTTAAGGATAAAAACCACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGATCCCTGTGTAGCCAAGTCTTTTCTCTTTAAGGATAAAAACCACA  394

seq1  TTCTGTTGACACATTTCAGTTAGCAAGAACAGTTAGCTAGAAGCAGAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGACACATTTCAGTTAGCAAGAACAGTTAGCTAGAAGCAGAACT  444

seq1  ACAGAAGCCAAAGCAAGGTTAGTACGCTCTGAGACTTTCCCAGAGCCGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCAAAGCAAGGTTAGTACGCTCTGAGACTTTCCCAGAGCCGTG  494

seq1  GACTTAGGTGGATTAGGTCTGTTTTAGTTGCAGGTGGTGCTGTCTACGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGTGGATTAGGTCTGTTTTAGTTGCAGGTGGTGCTGTCTACGGG  544

seq1  CTGAGTTTCACACTCTGGATGGTGCTTCCATCACGGGGTCAACTGTGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCACACTCTGGATGGTGCTTCCATCACGGGGTCAACTGTGCTA  594

seq1  AGATCTGTGGCCCTGTCACAGGGTTACATCCTCCTGCCTCAAACAGTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGGCCCTGTCACAGGGTTACATCCTCCTGCCTCAAACAGTGGG  644

seq1  GTACCACCGTATCTGGCCTCTAAATACTGTTGAAGTCTGCTGTGCTGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCGTATCTGGCCTCTAAATACTGTTGAAGTCTGCTGTGCTGGCC  694

seq1  TCTGTGTGAGCACAGGTACACGGAGATACAAAGACAGGCAAGCCTTCGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGAGCACAGGTACACGGAGATACAAAGACAGGCAAGCCTTCGCT  744

seq1  CTTTTCTAGATCCCAGTGGTCAGACTGGGGAGCCTGACGGTTATAAGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGATCCCAGTGGTCAGACTGGGGAGCCTGACGGTTATAAGAGG  794

seq1  ATTTAAGCCTGGGTAGAGGTCAGTACTAGAGTATAGCAAATGAGATATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCCTGGGTAGAGGTCAGTACTAGAGTATAGCAAATGAGATATTT  844

seq1  GTCTTATGTGGAAAATTTAGGGGGCAAAGTACCCAATAATCAAGAGAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGTGGAAAATTTAGGGGGCAAAGTACCCAATAATCAAGAGAAAT  894

seq1  GTGTATTTATATATGTGAGAGACAAGGTTTTGTGCAGTTCAGGTTGGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTATATATGTGAGAGACAAGGTTTTGTGCAGTTCAGGTTGGCCT  944

seq1  GGAATTC  954
      |||||||
seq2  GGAATTC  951

seq1: chr15_100427974_100428466
seq2: B6Ng01-054M23.g_66_564

seq1  GAATTCACCCTTGTGCATGCTAGGTAAGTGTTGTACCATTGCATACCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTGTGCATGCTAGGTAAGTGTTGTACCATTGCATACCACA  50

seq1  TATAACAGCGATTTCTTCTGATTTGTGACATGTATCTTGTCCTCCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGCGATTTCTTCTGATTTGTGACATGTATCTTGTCCTCCATCAT  100

seq1  CAGGGTGTGCCTGTGTGAGCTGTGACTGATGGACAGATGGATATAATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGCCTGTGTGAGCTGTGACTGATGGACAGATGGATATAATACT  150

seq1  CTCTCTCCTGAGCTCTGGGCCCAGATTATTTTCTTCCTTTCCTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTGAGCTCTGGGCCCAGATTATTTTCTTCCTTTCCTTTTTTTT  200

seq1  TTTTTTTTTTTTTTGTTTGTTTGTTATGTTTTTCGGTTTGTTTTAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGTTTGTTTGTTATGTTTTTCGGTTTGTTTTAGGGGA  250

seq1  TCAGAGGTTCTTTGTATATAGACCAGGCTGGCCTCAAACTCAGAGATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTTCTTTGTATATAGACCAGGCTGGCCTCAAACTCAGAGATCCA  300

seq1  CCTGCTTCTGCCTCTGAAGTGCTGGGATCAAAGATGTGTGCCACCACCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTGCCTCTGAAGTGCTGGGATCAAAGATGTGTGCCACCACCGC  350

seq1  CTGGCTTCTTTCTTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTTTCTTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  450

seq1  CTTCTTCCTCCTCTTCTTCTTCTT------CTTCTTCTTCTTCTTCTTC  493
      ||||||||||||||||||||||||      |||||||| ||||||||||
seq2  CTTCTTCCTCCTCTTCTTCTTCTTCGTCTGCTTCTTCTGCTTCTTCTTC  499