BAC Information

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BAC

Clone NameB6Ng01-055K19
Chromosome15 (Build37)
Map Location 90,222,185 - 90,330,294
singlet/doubletdoublet
Overlap geneCpne8
Upstream gene1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
Downstream geneEG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055K19.bB6Ng01-055K19.g
ACCDH878055DH878056
length1,1581,054
definitionDH878055|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K19, 5' end.DH878056|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,222,185 - 90,223,362)(90,329,238 - 90,330,294)
sequence
gaattctttaactcacactgcagtgtgagagtggaacccaggcaagggca
tggccgtctcacctgggtgtaggttcttgtacttgcttggcatcagccca
cacttgccgttccccaaggaagcgtgttcttctggaaggaatgtaccact
ttatgtgggcaaatctaacacccatctgtttatgaaattccttgtctgac
tgtgtggaaagattggcaagtttagccccaggaaacaaatgaaatcactt
tatattcccagacatcttgggaataaacaatataaactttctccaaatgc
tcttgcctctcgtactgctcatgagctggataattaaagcgtgggctcac
aggtaaaaacatgtcgttctatacaggtgaaagacgagcttgactctctc
ctgaattatacaaaagagaagtcgatttctaaatctgatagtccacaaac
atgcatataagataaaaaagtcttggcttttctcagaaccaatgtagcta
cctcttaaagatttcactgatgcaagcttttgttccaatctctgtttatt
atttttctttctgtattccatgttttatgtactgtggaataagcaaaact
gtcttctatttgttctcctctgaaaggatctcctccgtttgtcttaaaaa
aaaacacatgggcaacggatgaagttagaatgaagcaggtaagaatgagg
atagtagagaaacctaagcactaaccgaccgatgtaaaagcattgattac
tgaaggaaacctggctaagctcatcagtgcttgtggctgagacatggtca
ttgcactagcagtgaatgctgattggtgatcgaggaaagcggtaccgtgt
tctataatttttgttaaactgatgagaagtcattcttgtttactctctgt
actgtccacgataacaggtcatgccttgggcactttcctttcaatttaca
aaccagaatcatagttgggatccctggcacataagatgatgatattagtg
atcatgtcagtctggggtagatacaatattcagtttacaaagactaaata
agcaaaataaatctgctcagaaagaaataatacggaacacatacaaacaa
aacctttgatttagaatttctgaatccgaaagttcagttggaatgttctt
acctttaa
gaattcttggaccattacacttctgtcagcttgacctgtgtaaaagagtg
tgactgcatttatatagaatgttcttttaggtataaatatagctcacacg
caaattaagaactgccattgggtaagacaaccctctctcgtttatacatt
aattgaacattcacctctggccttttatcagagtttgtacctcaaaatcc
tatgtgagactgacagagtaataaattgagatttgggtcctaaggcaaag
agcactctggggaagcacatttcgtgggcaaagtgttgacagcctttaaa
gaacagtgataaattagtgaatcgttatgttgcgagcggaaatattaaca
tgcgcacaatatgctaattgaatgtgattccagcctctggctagttgata
gaattatcttgataaacaaagcgctccaccatgggagagaaccgtacaga
agcagtagaactgatctgattatatggatggatactggacagcctggctg
aggctcagcctttcataggccagttaagctatagctttttctgtcactag
tgacctgagcaaacgtctttaaagatggtttgttactggtcgcccggcta
attccctttaggggacaccatggaactgtgattggtcggcagcgttagca
tctatacggttagttatatttactaagagtggccacttgtttagcttgag
atttggtcttcctgtttctgaagcccacgtcttttagtcctgactgctgc
tgggtctgctactttttgctctggtcattcacatctgtccaactgtggac
atgcaccgcctctttagagctgcaaaggctatggcatcttcttcatgctt
tgactcgtgataatctgcattgggccagtgatggcagattgtgattccca
atatccatcaactgcaagctaaatagctgaggggttctctctggcatgtg
tgctcagtcctgtatgtgtgtctaccactcacgggacgtggcggtctgcc
agaactgatggaagtcccattggtcagctttggttgtggtaaaacaagtt
ggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_90222185_90223362
seq2: B6Ng01-055K19.b_49_1206

seq1  GAATTCTTTAACTCACACTGCAGTGTGAGAGTGGAACCCAGGCAAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACTCACACTGCAGTGTGAGAGTGGAACCCAGGCAAGGGCA  50

seq1  TGGCCGTCTCACCTGGGTGTAGGTTCTTGTACTTGCTTGGCATCAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTCTCACCTGGGTGTAGGTTCTTGTACTTGCTTGGCATCAGCCCA  100

seq1  CACTTGCCGTTCCCCAAGGAAGCGTGTTCTTCTGGAAGGAATGTACCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCGTTCCCCAAGGAAGCGTGTTCTTCTGGAAGGAATGTACCACT  150

seq1  TTATGTGGGCAAATCTAACACCCATCTGTTTATGAAATTCCTTGTCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGGCAAATCTAACACCCATCTGTTTATGAAATTCCTTGTCTGAC  200

seq1  TGTGTGGAAAGATTGGCAAGTTTAGCCCCAGGAAACAAATGAAATCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAAGATTGGCAAGTTTAGCCCCAGGAAACAAATGAAATCACTT  250

seq1  TATATTCCCAGACATCTTGGGAATAAACAATATAAACTTTCTCCAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCCAGACATCTTGGGAATAAACAATATAAACTTTCTCCAAATGC  300

seq1  TCTTGCCTCTCGTACTGCTCATGAGCTGGATAATTAAAGCGTGGGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCTCGTACTGCTCATGAGCTGGATAATTAAAGCGTGGGCTCAC  350

seq1  AGGTAAAAACATGTCGTTCTATACAGGTGAAAGACGAGCTTGACTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAACATGTCGTTCTATACAGGTGAAAGACGAGCTTGACTCTCTC  400

seq1  CTGAATTATACAAAAGAGAAGTCGATTTCTAAATCTGATAGTCCACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATACAAAAGAGAAGTCGATTTCTAAATCTGATAGTCCACAAAC  450

seq1  ATGCATATAAGATAAAAAAGTCTTGGCTTTTCTCAGAACCAATGTAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAAGATAAAAAAGTCTTGGCTTTTCTCAGAACCAATGTAGCTA  500

seq1  CCTCTTAAAGATTTCACTGATGCAAGCTTTTGTTCCAATCTCTGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAGATTTCACTGATGCAAGCTTTTGTTCCAATCTCTGTTTATT  550

seq1  ATTTTTCTTTCTGTATTCCATGTTTTATGTACTGTGGAATAAGCAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTCTGTATTCCATGTTTTATGTACTGTGGAATAAGCAAAACT  600

seq1  GTCTTCTATTTGTTCTCCTCTGAAAGGATCTCCTCCGTTTGTCTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTATTTGTTCTCCTCTGAAAGGATCTCCTCCGTTTGTCTTAAAAA  650

seq1  AAAACACATGGGCAACGGATGAAGTTAGAATGAAGCAGGTAAGAATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATGGGCAACGGATGAAGTTAGAATGAAGCAGGTAAGAATGAGG  700

seq1  ATAGTAGAGAAACCTAAGCACTAACCGACCGATGTAAAAGCATTGATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAGAAACCTAAGCACTAACCGACCGATGTAAAAGCATTGATTAC  750

seq1  TGAAGGAAACCTGGCTAAGCTCATCAGTGCTTGTGGCTGAGACATGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAACCTGGCTAAGCTCATCAGTGCTTGTGGCTGAGACATGGTCA  800

seq1  TTGCACTAGCAGTGAATGCTGATTGGTGATCGAGGAAAGCGGTACCGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTAGCAGTGAATGCTGATTGGTGATCGAGGAAAGCGGTACCGTGT  850

seq1  TCTATAATTTTTGTTAAACTGATGAGAAGTCATTCTTGTTTACTCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATTTTTGTTAAACTGATGAGAAGTCATTCTTGTTTACTCTCTGT  900

seq1  ACTGTCCACGATAACAGGTCATGCCTTGGGCACTTTCCTTTCAATTTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGTCCACGATAACAGGTCATGCCTTGGGCACTTTCCTTTCAATTTAC-  949

seq1  AAACCAGAATCATAGTTGGGAATCCCTGGCACATAAGGATGATGATATTA  1000
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  AAACCAGAATCATAGTTGGG-ATCCCTGGCACATAA-GATGATGATATTA  997

seq1  GTGATCATGTCAGTCTGGGGTAGATAACAATATCCAGTTTTACAAAGACT  1050
      ||||||||||||||||||||||||| ||||||| ||| ||||||||||||
seq2  GTGATCATGTCAGTCTGGGGTAGAT-ACAATATTCAG-TTTACAAAGACT  1045

seq1  AAATAAAGCCAAAAATAAATCTGCTCAGAAAGAAATAAATACAGAACAAA  1100
      |||| ||||  ||||||||||||||||||||||||| ||||| |||||  
seq2  AAAT-AAGC--AAAATAAATCTGCTCAGAAAGAAAT-AATACGGAACA--  1089

seq1  CCAATACAAAACAAAACAACCTTTGATTTTAAGAAATTTCTGGATCACGG  1150
         |||| ||||||   ||||||||||||  || |||||||| ||| || 
seq2  --CATAC-AAACAA---AACCTTTGATTT--AG-AATTTCTGAATC-CG-  1128

seq1  AAAAGTTCAGTTGGGATG---TTTCCTTTAA  1178
       ||||||||||||| |||   || |||||||
seq2  -AAAGTTCAGTTGGAATGTTCTTACCTTTAA  1158

seq1: chr15_90329238_90330294
seq2: B6Ng01-055K19.g_67_1119 (reverse)

seq1  GCCAAC-TGTTTTTACACAACAAAAGCTGACCAATGGGACTTCCATCAGG  49
      |||||| ||||||  |||||| ||||||||||||||||||||||||||| 
seq2  GCCAACTTGTTTTACCACAACCAAAGCTGACCAATGGGACTTCCATCAGT  50

seq1  TCTGGCAGACCGCCACGTCCCCGTGAGTGGTAGACACACCATTACAGGAC  99
      |||||||||||||||||| ||||||||||||||||||||   ||||||||
seq2  TCTGGCAGACCGCCACGT-CCCGTGAGTGGTAGACACAC--ATACAGGAC  97

seq1  TGAGCAACACATGCCAGAGGAGAACCCCTCAGCTATTTTAGCTTGCAGTT  149
      ||||| |||||||||||| |||||||||||||||| ||||||||||||||
seq2  TGAGC-ACACATGCCAGA-GAGAACCCCTCAGCTA-TTTAGCTTGCAGTT  144

seq1  GATGGATATTGGGAATCACAATCTGCCATCACTGG-CCAATGCAGATTAT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATGGATATTGGGAATCACAATCTGCCATCACTGGCCCAATGCAGATTAT  194

seq1  CACGAGTCAAAGCATGAAGAAGATGCCATAGCCTTTGCAGCTCTAAAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCAAAGCATGAAGAAGATGCCATAGCCTTTGCAGCTCTAAAGAG  244

seq1  GCGGTGCATGTCCACAGTTGGACAGATGTGAATGACCAGAGCAAAAAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCATGTCCACAGTTGGACAGATGTGAATGACCAGAGCAAAAAGTA  294

seq1  GCAGACCCAGCAGCAGTCAGGACTAAAAGACGTGGGCTTCAGAAACAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCCAGCAGCAGTCAGGACTAAAAGACGTGGGCTTCAGAAACAGGA  344

seq1  AGACCAAATCTCAAGCTAAACAAGTGGCCACTCTTAGTAAATATAACTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAATCTCAAGCTAAACAAGTGGCCACTCTTAGTAAATATAACTAA  394

seq1  CCGTATAGATGCTAACGCTGCCGACCAATCACAGTTCCATGGTGTCCCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATAGATGCTAACGCTGCCGACCAATCACAGTTCCATGGTGTCCCCT  444

seq1  AAAGGGAATTAGCCGGGCGACCAGTAACAAACCATCTTTAAAGACGTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATTAGCCGGGCGACCAGTAACAAACCATCTTTAAAGACGTTTG  494

seq1  CTCAGGTCACTAGTGACAGAAAAAGCTATAGCTTAACTGGCCTATGAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCACTAGTGACAGAAAAAGCTATAGCTTAACTGGCCTATGAAAG  544

seq1  GCTGAGCCTCAGCCAGGCTGTCCAGTATCCATCCATATAATCAGATCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCTCAGCCAGGCTGTCCAGTATCCATCCATATAATCAGATCAGT  594

seq1  TCTACTGCTTCTGTACGGTTCTCTCCCATGGTGGAGCGCTTTGTTTATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTTCTGTACGGTTCTCTCCCATGGTGGAGCGCTTTGTTTATCA  644

seq1  AGATAATTCTATCAACTAGCCAGAGGCTGGAATCACATTCAATTAGCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCTATCAACTAGCCAGAGGCTGGAATCACATTCAATTAGCATA  694

seq1  TTGTGCGCATGTTAATATTTCCGCTCGCAACATAACGATTCACTAATTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCGCATGTTAATATTTCCGCTCGCAACATAACGATTCACTAATTTA  744

seq1  TCACTGTTCTTTAAAGGCTGTCAACACTTTGCCCACGAAATGTGCTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTCTTTAAAGGCTGTCAACACTTTGCCCACGAAATGTGCTTCCC  794

seq1  CAGAGTGCTCTTTGCCTTAGGACCCAAATCTCAATTTATTACTCTGTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCTCTTTGCCTTAGGACCCAAATCTCAATTTATTACTCTGTCAG  844

seq1  TCTCACATAGGATTTTGAGGTACAAACTCTGATAAAAGGCCAGAGGTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATAGGATTTTGAGGTACAAACTCTGATAAAAGGCCAGAGGTGAA  894

seq1  TGTTCAATTAATGTATAAACGAGAGAGGGTTGTCTTACCCAATGGCAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTAATGTATAAACGAGAGAGGGTTGTCTTACCCAATGGCAGTT  944

seq1  CTTAATTTGCGTGTGAGCTATATTTATACCTAAAAGAACATTCTATATAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTGCGTGTGAGCTATATTTATACCTAAAAGAACATTCTATATAA  994

seq1  ATGCAGTCACACTCTTTTACACAGGTCAAGCTGACAGAAGTGTAATGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCACACTCTTTTACACAGGTCAAGCTGACAGAAGTGTAATGGTC  1044

seq1  CAAGAATTC  1057
      |||||||||
seq2  CAAGAATTC  1053