BAC Information

Click to search

BAC

Clone NameB6Ng01-055M19
Chromosome15 (Build37)
Map Location 102,684,636 - 102,840,428
singlet/doubletdoublet
Overlap geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6
Upstream geneKrt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
Downstream geneHoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M19.bB6Ng01-055M19.g
ACCDH878147DH878148
length1,169660
definitionDH878147|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M19, 5' end.DH878148|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,684,636 - 102,685,814)(102,839,769 - 102,840,428)
sequence
gaattctgtgtatactttaaatgggtgaatcatgcagtatgtgaaataca
tctcaataaagcattttaaatccttatgatacagttcctgccctcagggg
ccctcctcaggaactggaattttatagttattgttcttcatttttaatgg
ctgttccattttgaaaatgtatttatttttccatcagtcaccatagtact
ggactttgttggcttggggtgaaagttgcaggaagaacataagagcagat
aaaacaagacagaatgtggcagagggaaactgaagcaggtcttgagatgg
gctctgggaagtaccctcattcctggatggtggatcttcaaggaccctca
ttcctgggtagtgaatcttcaaggatccaaatgcaaatgctctcattgat
ttctggttgtggtggtgtctgggattgaatatttcttctctgaatccact
gacattagatgggtgaaagtctgaccttctacctgaaggttttggtaggc
tcaaggtggaaggaatgctgtagagaacctgctaccgtctggatgatgga
aaggagcccaagagctggggagagtttccagaagtcgggatggactctag
aatcaaaaccttcctccatatacacggggaaggaatttcacccctcctat
gctgattttgattctaatcctggcttcttttcttcctccagaatcttggc
ctgttgcatccttttattctgaacagccaggctgacaggatcctttcttg
acagaacagatatgcaagaagtggcgagctctccaaagcaaatgaaataa
tgtgatagaagagttatctctggggttcctgagatggctcagtaagtaac
ggtgcctgctactcagcctgacaccccaagttcaattccccagaacccat
atggtagaaaggagagaactgaccaccacacacatgcaccatacataggt
accatagatgtaaatatgtttaatttaaggatggcttagctctggtcatt
tggaactctagcctgatgagcaagcacaccactgggatggggagctaggg
gcttgacttgtggcagaaagaactcttaatgaaaaaaaaaaaagttcctt
catttcaggaaatgtttctcagactgaaatacagctggatttctaagtat
gtctgaagtctgttgcagg
gaattcattcgctgcatccaggggtaaatctggatactggctttctggtc
ctggggcgcagtcctgccctgctcagaactaaaatcctgagcgattgagg
tctgtgtgttatgtcctaaggtgttttgtctgcagtttgagagcatgtct
ttctcctggtaaaaggaattagatccatagtcatacggcccccggctgga
actgaacacgacattctcctgtggcgaataaaagggagtcgagtagatcc
ggttctgagctacggctgctccataggtcgagaaatgcctcactggatca
taggcggtggaattgagggcgacgttggggaggacgtcctggcccccggc
gaggtggcaggataaggaagggttagtgaagtaggaattcatccctttgc
ctttacctggtcgggctatgatttctttaatatttatttctgtctccagt
ttgtactcggaactagatggttatagggacggctccaatccaggacagac
aaaatgacaaagtcagctgacccccttccagccaatcgcaagccagatgt
caagaaaggggaaaaaaatcgcttctgcttctgttgattccctagttgag
actaagtatgtgctttgaaagtaagacttagatttcttttaagaatatat
gtatgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102684636_102685814
seq2: B6Ng01-055M19.b_48_1216

seq1  GAATTCTGTGTATACTTTAAATGGGTGAATCATGCAGTATGTGAAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTATACTTTAAATGGGTGAATCATGCAGTATGTGAAATACA  50

seq1  TCTCAATAAAGCATTTTAAATCCTTATGATACAGTTCCTGCCCTCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAAAGCATTTTAAATCCTTATGATACAGTTCCTGCCCTCAGGGG  100

seq1  CCCTCCTCAGGAACTGGAATTTTATAGTTATTGTTCTTCATTTTTAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCAGGAACTGGAATTTTATAGTTATTGTTCTTCATTTTTAATGG  150

seq1  CTGTTCCATTTTGAAAATGTATTTATTTTTCCATCAGTCACCATAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCATTTTGAAAATGTATTTATTTTTCCATCAGTCACCATAGTACT  200

seq1  GGACTTTGTTGGCTTGGGGTGAAAGTTGCAGGAAGAACATAAGAGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGTTGGCTTGGGGTGAAAGTTGCAGGAAGAACATAAGAGCAGAT  250

seq1  AAAACAAGACAGAATGTGGCAGAGGGAAACTGAAGCAGGTCTTGAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGACAGAATGTGGCAGAGGGAAACTGAAGCAGGTCTTGAGATGG  300

seq1  GCTCTGGGAAGTACCCTCATTCCTGGATGGTGGATCTTCAAGGACCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAAGTACCCTCATTCCTGGATGGTGGATCTTCAAGGACCCTCA  350

seq1  TTCCTGGGTAGTGAATCTTCAAGGATCCAAATGCAAATGCTCTCATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTAGTGAATCTTCAAGGATCCAAATGCAAATGCTCTCATTGAT  400

seq1  TTCTGGTTGTGGTGGTGTCTGGGATTGAATATTTCTTCTCTGAATCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGTGGTGGTGTCTGGGATTGAATATTTCTTCTCTGAATCCACT  450

seq1  GACATTAGATGGGTGAAAGTCTGACCTTCTACCTGAAGGTTTTGGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGATGGGTGAAAGTCTGACCTTCTACCTGAAGGTTTTGGTAGGC  500

seq1  TCAAGGTGGAAGGAATGCTGTAGAGAACCTGCTACCGTCTGGATGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGAAGGAATGCTGTAGAGAACCTGCTACCGTCTGGATGATGGA  550

seq1  AAGGAGCCCAAGAGCTGGGGAGAGTTTCCAGAAGTCGGGATGGACTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCAAGAGCTGGGGAGAGTTTCCAGAAGTCGGGATGGACTCTAG  600

seq1  AATCAAAACCTTCCTCCATATACACGGGGAAGGAATTTCACCCCTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACCTTCCTCCATATACACGGGGAAGGAATTTCACCCCTCCTAT  650

seq1  GCTGATTTTGATTCTAATCCTGGCTTCTTTTCTTCCTCCAGAATCTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTTGATTCTAATCCTGGCTTCTTTTCTTCCTCCAGAATCTTGGC  700

seq1  CTGTTGCATCCTTTTATTCTGAACAGCCAGGCTGACAGGATCCTTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCATCCTTTTATTCTGAACAGCCAGGCTGACAGGATCCTTTCTTG  750

seq1  ACAGAACAGATATGCAAGAAGTGGCGAGCTCTCCAAAGCAAATGAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGATATGCAAGAAGTGGCGAGCTCTCCAAAGCAAATGAAATAA  800

seq1  TGTGATAGAAGAGTTATCTCTGGGGTTCCTGAGATGGCTCAGTAAGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGAAGAGTTATCTCTGGGGTTCCTGAGATGGCTCAGTAAGTAAC  850

seq1  GGTGCCTGCTACTCAGCCTGACACCCCAAGTTCAAATCCCCAGAACCCAT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTGCCTGCTACTCAGCCTGACACCCCAAGTTCAATTCCCCAGAACCCAT  900

seq1  ATGGTAG-AAGGAGAGAACTGACCACCACACACATGCACCATAACATAGG  949
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ATGGTAGAAAGGAGAGAACTGACCACCACACACATGCACCAT-ACATAGG  949

seq1  TACCCATAGATGTACAATATGTTTAATTTTTAAAGAATGGCTTAGCTCTG  999
      || ||||||||||| ||||||||||||||   ||| ||||||||||||||
seq2  TA-CCATAGATGTA-AATATGTTTAATTT---AAGGATGGCTTAGCTCTG  994

seq1  GTCATTTGGAAACTCTTAGCCTGATGAGCAAGCAACACACT-GGAGTGGG  1048
      ||||||||| ||||| ||||||||||||||||||   |||| |||  |||
seq2  GTCATTTGG-AACTC-TAGCCTGATGAGCAAGCACACCACTGGGATGGGG  1042

seq1  AGCTAAGGGGCTGACTTGTGGTAGAAAG-ACTCTTATTTAAAAAAAAAAA  1097
      ||||| |||  |||||||||| |||||| |||||||  | ||||||||||
seq2  AGCTAGGGGCTTGACTTGTGGCAGAAAGAACTCTTA-ATGAAAAAAAAAA  1091

seq1  AAGTTCTCTCATTTCAAGAAATG-TTCTCAG-CTGAGAATTACAGAGCTG  1145
      ||||||  |||||||| |||||| ||||||| |||| |||   | |||||
seq2  AAGTTCCTTCATTTCAGGAAATGTTTCTCAGACTGA-AAT---ACAGCTG  1137

seq1  GATTCTAAAGTAAGTCCTGAATGCTTGTTGCAGG  1179
      ||||   ||||| || ||||| |  |||||||||
seq2  GATTTCTAAGTATGT-CTGAA-GTCTGTTGCAGG  1169

seq1: chr15_102839769_102840428
seq2: B6Ng01-055M19.g_70_729 (reverse)

seq1  CACCACATACATATATTCTTAAAAGAAATCTAAGTCTTACTTTCAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATACATATATTCTTAAAAGAAATCTAAGTCTTACTTTCAAAGCA  50

seq1  CATACTTAGTCTCAACTAGGGAATCAACAGAAGCAGAAGCGATTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTAGTCTCAACTAGGGAATCAACAGAAGCAGAAGCGATTTTTTTC  100

seq1  CCCTTTCTTGACATCTGGCTTGCGATTGGCTGGAAGGGGGTCAGCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTGACATCTGGCTTGCGATTGGCTGGAAGGGGGTCAGCTGACT  150

seq1  TTGTCATTTTGTCTGTCCTGGATTGGAGCCGTCCCTATAACCATCTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTGTCTGTCCTGGATTGGAGCCGTCCCTATAACCATCTAGTT  200

seq1  CCGAGTACAAACTGGAGACAGAAATAAATATTAAAGAAATCATAGCCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTACAAACTGGAGACAGAAATAAATATTAAAGAAATCATAGCCCGA  250

seq1  CCAGGTAAAGGCAAAGGGATGAATTCCTACTTCACTAACCCTTCCTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAAGGCAAAGGGATGAATTCCTACTTCACTAACCCTTCCTTATC  300

seq1  CTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATT  350

seq1  CCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTA  400

seq1  GCTCAGAACCGGATCTACTCGACTCCCTTTTATTCGCCACAGGAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAACCGGATCTACTCGACTCCCTTTTATTCGCCACAGGAGAATGT  450

seq1  CGTGTTCAGTTCCAGCCGGGGGCCGTATGACTATGGATCTAATTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCAGTTCCAGCCGGGGGCCGTATGACTATGGATCTAATTCCTTTT  500

seq1  ACCAGGAGAAAGACATGCTCTCAAACTGCAGACAAAACACCTTAGGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGAAAGACATGCTCTCAAACTGCAGACAAAACACCTTAGGACAT  550

seq1  AACACACAGACCTCAATCGCTCAGGATTTTAGTTCTGAGCAGGGCAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGACCTCAATCGCTCAGGATTTTAGTTCTGAGCAGGGCAGGAC  600

seq1  TGCGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGC  650

seq1  GAATGAATTC  660
      ||||||||||
seq2  GAATGAATTC  660