BAC Information

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BAC

Clone NameB6Ng01-055N04
Chromosome15 (Build37)
Map Location 102,139,130 - 102,290,908
singlet/doubletdoublet
Overlap geneEspl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13
Upstream geneKrt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
Downstream genePcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N04.bB6Ng01-055N04.g
ACCDH878165DH878166
length1,0071,101
definitionDH878165|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N04, 5' end.DH878166|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,289,891 - 102,290,908)(102,139,130 - 102,140,251)
sequence
gaattccgggaggacaggggccagggggaaaggcaggattgagaggtggt
ggacaggcaggattggaacctcctgggcacacaacttggggtggatatgg
attcggtcctggaagaagaatccgagaataaagattagaactgtccggaa
cctctatcaacacataatacaaatcactaccgttcttaagccttatggaa
aggcagaacttggtaactagcagtggtccggtggctttgcttttgcttgg
ggctgcggggatagatagaaacttcctgtttcattgcaaaatgggctggg
gcaggtcagaggagagcccccaggaacttaccagcattaggattccacat
gtcgagatgttagctcaagcctaggaagtaaaccaggcaaagtctgaagg
ttccaggaagggaggaggattttcgagaacccgagccccaccctacagcc
tccaccctaccaagactctcacagataaacctccacttaaaaatgggctg
cactctggaaacagaggcaggtggatctctgagttccagaccagcctggt
cgaaaaagagttacaggacagctagagctaccctgtgtcaaacccaaaac
aaaaggaaatgaaaaaaagttccctgctgggcgtgggggtgcacaccttt
aataccagcacttgggaggcagaggcaggcgaatgaggccagcctggtct
acaaagtaagttccaggacagctggagctatacagagaaaccctgtctcg
aaataacaaaaacaacaaacaaacaaaacaaacaaaaaaaaaagttccct
ttttctttccgcatcctcatagcctactctagcccaggattaaatcacag
gaactctcttccagggcccctcccactttcactatctcacctggatggag
aagtctcatttccctctccctggaaagggaccggaggctttaagcatccg
tattgtgagagggacctaactccctgctcgcccgggggcacccctgagtg
aagctaa
gaattctttcctgtcgggtttggtgcatcttttaaccaactgtatctagt
cctttacagactgcgttacgtgatctatgtctgtgggatggcggcttgag
agggtctggtttttttttttttcatttttcaagacaggttttctctgtgt
agccttgcatgtcctggagctccctctgtagaccaaggtagccgtaacct
catggagatcctcctgcttgtgcctctcaagtgctaggactaaaggcctg
tagcccatccccccaactcagcgccagttccaactacatagcaagttcga
gcgaggctagtttgggtcacatgacaccctgcctccaaggcccaaagtgt
gtcgggttgttgtaggcctcctgagagtggtcgatagagttctgggaatg
tatgaacaccccaaggtcccaggtttcagaagcctgggggctaggggaca
tacaggcgctcacaggaacggagtcaacatgttgctcttggctgaccagc
ccttgcaggctctggagaccctcctgctcctgcagattgtatctaagaga
ctgcaggaccacgcaaaggcagccagctcttcctgccagcttacccagct
actcttgaaccttggctgtcccagctatgcgcaggtgagtactggtttgt
tgagtccgaggccgcagggccagtagctttaaaggcccctttccttgaga
aggtctggctgtagtgcatttaattagcaggaggaattctggaggcggcc
ctgggaacaggagcttctttcctggccattgagttctgcagctcaaacct
ctttcccacctgtccctcttgacttagttgatgccttgttaccttgtgtg
cggtttgtcatactgttggctttacagtgtcttcccccaccccttttctt
tcgtggcatcggtagtggttgaacccatggtttcaagccactgactggat
agagctttgccactatgctcagcccagcctctcttgatttcatcaagtca
gcaagattgaatctcctaaagatccacgctctctgacatctgaactctct
gactttaaaacattttaataaaatgattttttctgaatgtactcacctta
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102289891_102290908
seq2: B6Ng01-055N04.b_44_1050 (reverse)

seq1  TTAGCTTCACTTCAGGGGTGCCCCCGGGGCGAGCAGGGAGTTTAGGTCCC  50
      |||||||||| |||||||||||||| |||||||||||||| |||||||||
seq2  TTAGCTTCAC-TCAGGGGTGCCCCC-GGGCGAGCAGGGAG-TTAGGTCCC  47

seq1  ATCTCACACTACGGATGCTTAAAGGCCTCCGGTCCCTTTCCAGGGAGAGG  100
       ||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  -TCTCACAATACGGATGCTTAAA-GCCTCCGGTCCCTTTCCAGGGAGAGG  95

seq1  GAAATGAGACTTCTCCATCCAGGTGAGATAGTGAAAGTGGGAGGGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGACTTCTCCATCCAGGTGAGATAGTGAAAGTGGGAGGGGCCCT  145

seq1  GGGAAGAGAGTTCCTGTGATTTAAATCCTGGGCTAGAGTAGGCTATGAGG  200
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -GGAAGAGAGTTCCTGTGATTT-AATCCTGGGCTAGAGTAGGCTATGAGG  193

seq1  ATGCGGGAAAGAAAAAGGGAACTTTTTTTTTTGTTTTGTTTTTGTTTGTT  250
      |||| |||||||||||||||||||||||||||||||   |||||||||||
seq2  ATGC-GGAAAGAAAAAGGGAACTTTTTTTTTTGTTT--GTTTTGTTTGTT  240

seq1  TGTTTGTTTTTGTTATTTCGAGACAGGGTTTCTCTGTATAGCTCCAGCTG  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTGTTTTTGTTATTTCGAGACAGGGTTTCTCTGTATAGCTCCAGCTG  289

seq1  TCCTGGAACTTACTTTGTAGACCAGGCTGGCCTCATTCGCCTGCCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTTACTTTGTAGACCAGGCTGGCCTCATTCGCCTGCCTCTGC  339

seq1  CTCCCAAGTGCTGGTATTAAAGGTGTGCACCCCCACGCCCAGCAGGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGTATTAAAGGTGTGCACCCCCACGCCCAGCAGGGAAC  389

seq1  TTTTTTTCATTTCCTTTTGTTTTGGGTTTGACACAGGGTAGCTCTAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATTTCCTTTTGTTTTGGGTTTGACACAGGGTAGCTCTAGCTG  439

seq1  TCCTGTAACTCTTTTTCGACCAGGCTGGTCTGGAACTCAGAGATCCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAACTCTTTTTCGACCAGGCTGGTCTGGAACTCAGAGATCCACCT  489

seq1  GCCTCTGTTTCCAGAGTGCAGCCCATTTTTAAGTGGAGGTTTATCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTTTCCAGAGTGCAGCCCATTTTTAAGTGGAGGTTTATCTGTGA  539

seq1  GAGTCTTGGTAGGGTGGAGGCTGTAGGGTGGGGCTCGGGTTCTCGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGTAGGGTGGAGGCTGTAGGGTGGGGCTCGGGTTCTCGAAAAT  589

seq1  CCTCCTCCCTTCCTGGAACCTTCAGACTTTGCCTGGTTTACTTCCTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTTCCTGGAACCTTCAGACTTTGCCTGGTTTACTTCCTAGGC  639

seq1  TTGAGCTAACATCTCGACATGTGGAATCCTAATGCTGGTAAGTTCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAACATCTCGACATGTGGAATCCTAATGCTGGTAAGTTCCTGGG  689

seq1  GGCTCTCCTCTGACCTGCCCCAGCCCATTTTGCAATGAAACAGGAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTCTGACCTGCCCCAGCCCATTTTGCAATGAAACAGGAAGTTT  739

seq1  CTATCTATCCCCGCAGCCCCAAGCAAAAGCAAAGCCACCGGACCACTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCCCCGCAGCCCCAAGCAAAAGCAAAGCCACCGGACCACTGCT  789

seq1  AGTTACCAAGTTCTGCCTTTCCATAAGGCTTAAGAACGGTAGTGATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAAGTTCTGCCTTTCCATAAGGCTTAAGAACGGTAGTGATTTGT  839

seq1  ATTATGTGTTGATAGAGGTTCCGGACAGTTCTAATCTTTATTCTCGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGTTGATAGAGGTTCCGGACAGTTCTAATCTTTATTCTCGGATT  889

seq1  CTTCTTCCAGGACCGAATCCATATCCACCCCAAGTTGTGTGCCCAGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCAGGACCGAATCCATATCCACCCCAAGTTGTGTGCCCAGGAGG  939

seq1  TTCCAATCCTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCCCTGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATCCTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCCCTGGCC  989

seq1  CCTGTCCTCCCGGAATTC  1018
      ||||||||||||||||||
seq2  CCTGTCCTCCCGGAATTC  1007

seq1: chr15_102139130_102140251
seq2: B6Ng01-055N04.g_68_1168

seq1  GAATTCTTTCCTGTCGGGTTTGGTGCATCTTTTAACCAACTGTATCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTGTCGGGTTTGGTGCATCTTTTAACCAACTGTATCTAGT  50

seq1  CCTTTACAGACTGCGTTACGTGATCTATGTCTGTGGGATGGCGGCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAGACTGCGTTACGTGATCTATGTCTGTGGGATGGCGGCTTGAG  100

seq1  AGGGTCTGGTTTTTTTTTTTTTCATTTTTCAAGACAGGTTTTCTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGGTTTTTTTTTTTTTCATTTTTCAAGACAGGTTTTCTCTGTGT  150

seq1  AGCCTTGCATGTCCTGGAGCTCCCTCTGTAGACCAAGGTAGCCGTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCATGTCCTGGAGCTCCCTCTGTAGACCAAGGTAGCCGTAACCT  200

seq1  CATGGAGATCCTCCTGCTTGTGCCTCTCAAGTGCTAGGACTAAAGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGATCCTCCTGCTTGTGCCTCTCAAGTGCTAGGACTAAAGGCCTG  250

seq1  TAGCCCATCCCCCCAACTCAGCGCCAGTTCCAACTACATAGCAAGTTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATCCCCCCAACTCAGCGCCAGTTCCAACTACATAGCAAGTTCGA  300

seq1  GCGAGGCTAGTTTGGGTCACATGACACCCTGCCTCCAAGGCCCAAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCTAGTTTGGGTCACATGACACCCTGCCTCCAAGGCCCAAAGTGT  350

seq1  GTCGGGTTGTTGTAGGCCTCCTGAGAGTGGTCGATAGAGTTCTGGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGTTGTTGTAGGCCTCCTGAGAGTGGTCGATAGAGTTCTGGGAATG  400

seq1  TATGAACACCCCAAGGTCCCAGGTTTCAGAAGCCTGGGGGCTAGGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACCCCAAGGTCCCAGGTTTCAGAAGCCTGGGGGCTAGGGGACA  450

seq1  TACAGGCGCTCACAGGAACGGAGTCAACATGTTGCTCTTGGCTGACCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCGCTCACAGGAACGGAGTCAACATGTTGCTCTTGGCTGACCAGC  500

seq1  CCTTGCAGGCTCTGGAGACCCTCCTGCTCCTGCAGATTGTATCTAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGCTCTGGAGACCCTCCTGCTCCTGCAGATTGTATCTAAGAGA  550

seq1  CTGCAGGACCACGCAAAGGCAGCCAGCTCTTCCTGCCAGCTTACCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGACCACGCAAAGGCAGCCAGCTCTTCCTGCCAGCTTACCCAGCT  600

seq1  ACTCTTGAACCTTGGCTGTCCCAGCTATGCGCAGGTGAGTACTGGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGAACCTTGGCTGTCCCAGCTATGCGCAGGTGAGTACTGGTTTGT  650

seq1  TGAGTCCGAGGCCGCAGGGCCAGTAGCTTTAAAGGCCCCTTTCCTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCGAGGCCGCAGGGCCAGTAGCTTTAAAGGCCCCTTTCCTTGAGA  700

seq1  AGGTCTGGCTGTAGTGCA-TTAATTAGCAGGAGGAATTCTGGAGGCGGCC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGTCTGGCTGTAGTGCATTTAATTAGCAGGAGGAATTCTGGAGGCGGCC  750

seq1  CTGGGAACAGGAGCTTCTTTCCTGGCCATTGAGTTCTGCAGCTCAAACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAGGAGCTTCTTTCCTGGCCATTGAGTTCTGCAGCTCAAACCT  800

seq1  CTTTTCCCACCTGTCCCTCTTGACTTAGTTGATGCCTTGTTACC-TGTGT  848
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  C-TTTCCCACCTGTCCCTCTTGACTTAGTTGATGCCTTGTTACCTTGTGT  849

seq1  GCGGTTTGTCATACTGTTGGCTTT-CAGTGTC-TCCCCCACCCCTTTTCT  896
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GCGGTTTGTCATACTGTTGGCTTTACAGTGTCTTCCCCCACCCCTTTTCT  899

seq1  TTCGTGGCATCGGTAGTGGTTGAACCCATGGTTTCAGGCACACTGACTGG  946
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  TTCGTGGCATCGGTAGTGGTTGAACCCATGGTTTCAAGC-CACTGACTGG  948

seq1  ATAAGAGCTTTGCCACTATGCTCAAGCCCAGGCCTTCTCTTGTATTTCAT  996
      || |||||||||||||||||||| |||||||  | ||||||| |||||||
seq2  AT-AGAGCTTTGCCACTATGCTC-AGCCCAG--CCTCTCTTG-ATTTCAT  993

seq1  CGAAGTCAGCACAGATCTGATCCCTCCTAAAAGACTCCACGGCTTCTCTG  1046
      | ||||||||| ||||   ||  ||||| ||||| ||||||   ||||||
seq2  C-AAGTCAGCA-AGATTGAAT--CTCCT-AAAGA-TCCACG--CTCTCTG  1035

seq1  ACAATCTGAAACTACTCTGACTTTATAAAACATTTTTAATAAAAAATGAT  1096
      || ||||| |||| |||||||||  ||||||| |||||||  ||||||||
seq2  AC-ATCTG-AACT-CTCTGACTT--TAAAACA-TTTTAAT--AAAATGAT  1077

seq1  TTTTTTCGTGAATGTACTCACTTTAC  1122
      |||||   ||||||||||||| ||||
seq2  TTTTT--CTGAATGTACTCACCTTAC  1101