BAC Information

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BAC

Clone NameB6Ng01-056C13
Chromosome15 (Build37)
Map Location 27,916,698 - 28,034,178
singlet/doubletdoublet
Overlap geneTrio
Upstream geneLOC625311, Ank, BC087945, LOC100040622, BC052328
Downstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056C13.bB6Ng01-056C13.g
ACCDH878408DH878409
length1,0351,113
definitionDH878408|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C13, 5' end.DH878409|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,033,134 - 28,034,178)(27,916,698 - 27,917,815)
sequence
gaattcagttactcttcccactgaccaaaattggcgtctggtggtggcct
cactgtaagagaggaaggggaatgtcaaggcccacatggacatgagcaga
aatcgtcatgacagtgttgtctgtgatcagccactttatccttcaagcca
cagaaagccactgaatggggaagtgagcacaccaaaggatggaaagcaag
ggtttgaactggggaagatcgctaggaagaaacacgtccgggcacccatt
gaagatgccatagaaatcctacacagtgtgggtgataaggctctgcagca
gggcagttctgctgagaagagagaaggaagctggctatgagggtgtctgg
ggaggtgagaaaggattgtgtctagcctccaattcctgacgtcaagatat
taaagggtttgagcctaatgaatgcattctgccttctaaatagtttgtca
agtgccataaagctatccatttggtagctctcaccaaagccaaggcagac
ttctgtattcagaaaccaggacaggagacaaaggagtaatttcaaaccag
aacgcctcttgaggactttgccccctttacaagggaatcacacaagaaaa
gaaaattggaagaatacagcaaaggctttctgtttgtcctctgatgtcag
ccctacaagacagggccactcatggatgagagaaaggccatctgaggcca
gccaaggctactccagatccttgctggagacagtgacttcccattgattc
ataatggaattttgtccttgaaggggaaaagatatcctcaaaaaacctcc
tgtaggacactgccctctgcaagacacacagctttccagggtgaaaggtg
tctcttccttccctccctgttttcacattcatttctgaggaagacttaca
tactcagtttccttcccattccaatatggctttcaaacccattagctgtt
actcaatgctgagggattttgaagcacaatgctcagtagaatttattcct
cagagaagccacagccctgagggagacaagtgagg
gaattccaggacaactggagctacacggtgagaccctgtgtgaaaaataa
ataaataaaagaaaaaagaaaaagaaagggggatggaaggcaggcaggca
ggaggatgggttctacgttttcagagttccccagttaaaatgttcagatc
accgctgactgtagatgaaggataccagggactgcaaagaacagctatct
cctggcacaaggaagtgctgtgtatcccaaatagaagcactctcttttgt
agccaccatctgcctctgctacagatgacacgctgcactgtatctgaaca
cctgccttttcacatttacaaacggtcacatccctggtatgttgggggca
tcattagtgtgaggtacaaatgagccactttgtagggctaagtcaaaaag
ctagctcctggaaacagcaaaatcatgaggttcagaaccaaaatgtgctt
gcctggggtccttctgtaatctaagaaagcattatcaattgcattctaag
tgttaacaatattaagatgcatcaacagactaaaagcagtggtaaaaaga
atattcattgaatatacacctcagggtcattaagatatttgtggggacta
atttttattagtttctaaaaatcaatttaagtatttgtgactgtgaaatg
cagcacactcacacatagacactagccagattccatccattcagttgatg
gatttgttggtcaacactctgccagcacttttctctcgtggaggactata
aagagaccaggaggacgggttactgcagaggctataatgttcttccagcc
agtggcccttcagacggagaacatgctgtgctagtttattaattatatat
gtattcaatctcaggggacgggaactgtgacttagcatatgagggaattc
tggaagcacgtctgtgcatatcatctgattgaactatgtaatagggctac
ccactttcttttaaaagccacggggtgtcaaatgaccacgtgtgtgagtc
tgttcccagatactctccccagacttcacagcaattcacttgctctagaa
atctttaagattgatgagtcctgctaatctccattgaggagtcatgctaa
taagcagatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28033134_28034178
seq2: B6Ng01-056C13.b_51_1085 (reverse)

seq1  CCTCAACTTGTCTCCCTCCAGGGGCTGTGGCTTCTCTTGAGGAATAAATT  50
      |||| |||||||||||||   ||||||||||||||| |||||||||||||
seq2  CCTC-ACTTGTCTCCCTC--AGGGCTGTGGCTTCTC-TGAGGAATAAATT  46

seq1  CTACTGGGCATTGTGCTTCAAAAATCCCCTCAGCATTGAGTAACAGGCTA  100
      |||||| ||||||||||||||||   ||||||||||||||||||| ||||
seq2  CTACTGAGCATTGTGCTTCAAAA--TCCCTCAGCATTGAGTAACA-GCTA  93

seq1  ATGGGTTTGGAAAGGCCATATTGGAATGGGAAGGAAACTTGAGTATGTAA  150
      |||||||||  || |||||||||||||||||||||||| |||||||||||
seq2  ATGGGTTTG--AAAGCCATATTGGAATGGGAAGGAAAC-TGAGTATGTAA  140

seq1  GTCTTCCTCAGAAATGAATGTGAAAACAGGGAGGGAAGGAAGAGACACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCAGAAATGAATGTGAAAACAGGGAGGGAAGGAAGAGACACCT  190

seq1  TTCACCCTGGAAAGCTGTGTGTCTTGCAGAGGGCAGTGTCCTACAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTGGAAAGCTGTGTGTCTTGCAGAGGGCAGTGTCCTACAGGAGG  240

seq1  TTTTTTGAGGATATCTTTTCCCCTTCAAGGACAAAATTCCATTATGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGGATATCTTTTCCCCTTCAAGGACAAAATTCCATTATGAATC  290

seq1  AATGGGAAGTCACTGTCTCCAGCAAGGATCTGGAGTAGCCTTGGCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGTCACTGTCTCCAGCAAGGATCTGGAGTAGCCTTGGCTGGCC  340

seq1  TCAGATGGCCTTTCTCTCATCCATGAGTGGCCCTGTCTTGTAGGGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGCCTTTCTCTCATCCATGAGTGGCCCTGTCTTGTAGGGCTGAC  390

seq1  ATCAGAGGACAAACAGAAAGCCTTTGCTGTATTCTTCCAATTTTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGACAAACAGAAAGCCTTTGCTGTATTCTTCCAATTTTCTTTTC  440

seq1  TTGTGTGATTCCCTTGTAAAGGGGGCAAAGTCCTCAAGAGGCGTTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGATTCCCTTGTAAAGGGGGCAAAGTCCTCAAGAGGCGTTCTGGT  490

seq1  TTGAAATTACTCCTTTGTCTCCTGTCCTGGTTTCTGAATACAGAAGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTACTCCTTTGTCTCCTGTCCTGGTTTCTGAATACAGAAGTCTG  540

seq1  CCTTGGCTTTGGTGAGAGCTACCAAATGGATAGCTTTATGGCACTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTTTGGTGAGAGCTACCAAATGGATAGCTTTATGGCACTTGACA  590

seq1  AACTATTTAGAAGGCAGAATGCATTCATTAGGCTCAAACCCTTTAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTAGAAGGCAGAATGCATTCATTAGGCTCAAACCCTTTAATATC  640

seq1  TTGACGTCAGGAATTGGAGGCTAGACACAATCCTTTCTCACCTCCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGTCAGGAATTGGAGGCTAGACACAATCCTTTCTCACCTCCCCAGA  690

seq1  CACCCTCATAGCCAGCTTCCTTCTCTCTTCTCAGCAGAACTGCCCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCATAGCCAGCTTCCTTCTCTCTTCTCAGCAGAACTGCCCTGCTG  740

seq1  CAGAGCCTTATCACCCACACTGTGTAGGATTTCTATGGCATCTTCAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTTATCACCCACACTGTGTAGGATTTCTATGGCATCTTCAATGG  790

seq1  GTGCCCGGACGTGTTTCTTCCTAGCGATCTTCCCCAGTTCAAACCCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGACGTGTTTCTTCCTAGCGATCTTCCCCAGTTCAAACCCTTGC  840

seq1  TTTCCATCCTTTGGTGTGCTCACTTCCCCATTCAGTGGCTTTCTGTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCTTTGGTGTGCTCACTTCCCCATTCAGTGGCTTTCTGTGGCT  890

seq1  TGAAGGATAAAGTGGCTGATCACAGACAACACTGTCATGACGATTTCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATAAAGTGGCTGATCACAGACAACACTGTCATGACGATTTCTGC  940

seq1  TCATGTCCATGTGGGCCTTGACATTCCCCTTCCTCTCTTACAGTGAGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCATGTGGGCCTTGACATTCCCCTTCCTCTCTTACAGTGAGGCC  990

seq1  ACCACCAGACGCCAATTTTGGTCAGTGGGAAGAGTAACTGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGACGCCAATTTTGGTCAGTGGGAAGAGTAACTGAATTC  1035

seq1: chr15_27916698_27917815
seq2: B6Ng01-056C13.g_70_1182

seq1  GAATTCCAGGACAACTGGAGCTACACGGTGAGACCCTGTGTGAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACTGGAGCTACACGGTGAGACCCTGTGTGAAAAATAA  50

seq1  ATAAATAAAAGAAAAAAGAAAAAGAAAGGGGGATGGAAGGCAGGCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAGAAAAAAGAAAAAGAAAGGGGGATGGAAGGCAGGCAGGCA  100

seq1  GGAGGATGGGTTCTACGTTTTCAGAGTTCCCCAGTTAAAATGTTCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGGTTCTACGTTTTCAGAGTTCCCCAGTTAAAATGTTCAGATC  150

seq1  ACCGCTGACTGTAGATGAAGGATACCAGGGACTGCAAAGAACAGCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGACTGTAGATGAAGGATACCAGGGACTGCAAAGAACAGCTATCT  200

seq1  CCTGGCACAAGGAAGTGCTGTGTATCCCAAATAGAAGCACTCTCTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACAAGGAAGTGCTGTGTATCCCAAATAGAAGCACTCTCTTTTGT  250

seq1  AGCCACCATCTGCCTCTGCTACAGATGACACGCTGCACTGTATCTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATCTGCCTCTGCTACAGATGACACGCTGCACTGTATCTGAACA  300

seq1  CCTGCCTTTTCACATTTACAAACGGTCACATCCCTGGTATGTTGGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTTCACATTTACAAACGGTCACATCCCTGGTATGTTGGGGGCA  350

seq1  TCATTAGTGTGAGGTACAAATGAGCCACTTTGTAGGGCTAAGTCAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTGTGAGGTACAAATGAGCCACTTTGTAGGGCTAAGTCAAAAAG  400

seq1  CTAGCTCCTGGAAACAGCAAAATCATGAGGTTCAGAACCAAAATGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTGGAAACAGCAAAATCATGAGGTTCAGAACCAAAATGTGCTT  450

seq1  GCCTGGGGTCCTTCTGTAATCTAAGAAAGCATTATCAATTGCATTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGTCCTTCTGTAATCTAAGAAAGCATTATCAATTGCATTCTAAG  500

seq1  TGTTAACAATATTAAGATGCATCAACAGACTAAAAGCAGTGGTAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAATATTAAGATGCATCAACAGACTAAAAGCAGTGGTAAAAAGA  550

seq1  ATATTCATTGAATATACACCTCAGGGTCATTAAGATATTTGTGGGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTGAATATACACCTCAGGGTCATTAAGATATTTGTGGGGACTA  600

seq1  ATTTTTATTAGTTTCTAAAAATCAATTTAAGTATTTGTGACTGTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTAGTTTCTAAAAATCAATTTAAGTATTTGTGACTGTGAAATG  650

seq1  CAGCACACTCACACATAGACACTAGCCAGATTCCATCCATTCAGTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACTCACACATAGACACTAGCCAGATTCCATCCATTCAGTTGATG  700

seq1  GATTTGTTGGTCAACACTCTGCCAGCACTTTTCTCTCGTGGAGGACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTGGTCAACACTCTGCCAGCACTTTTCTCTCGTGGAGGACTATA  750

seq1  AAGAGACCAGGAGGACGGGTTACTGCAGAGGCTATAATGTTCTTCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCAGGAGGACGGGTTACTGCAGAGGCTATAATGTTCTTCCAGCC  800

seq1  AGTGGCCCTTCAGACGGAGAACATGCTGTGCTAG-TTATTAATTATATAT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGGCCCTTCAGACGGAGAACATGCTGTGCTAGTTTATTAATTATATAT  850

seq1  GTA-TCAATCTCAGGGGACGGGAACTGTGACCTAGCATATGAGGGAATTC  898
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATTCAATCTCAGGGGACGGGAACTGTGACTTAGCATATGAGGGAATTC  900

seq1  TGGAAGCACGTCTGTGCATATCATCTGATTGAACTATGTAATAGGGCTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCACGTCTGTGCATATCATCTGATTGAACTATGTAATAGGGCTAC  950

seq1  CCACTTCCTTTTAAAAGCCAC-GGGTGTCAAATGACCACGTGTGTGAGTC  997
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CCACTTTCTTTTAAAAGCCACGGGGTGTCAAATGACCACGTGTGTGAGTC  1000

seq1  TGTCCCCAGATACTTCTCCACAGACTTCACCAGCCATTCACTTGCTCTAG  1047
      ||| ||||||||| ||||| ||||||||| |||| |||||||||||||||
seq2  TGTTCCCAGATAC-TCTCCCCAGACTTCA-CAGCAATTCACTTGCTCTAG  1048

seq1  AAATCTTTAAGATTTGATGAGTCCTGCTAATCTCCATTTGATGAGTCCAT  1097
      |||||||||||| ||||||||||||||||||||||| |||| |||| |||
seq2  AAATCTTTAAGA-TTGATGAGTCCTGCTAATCTCCA-TTGAGGAGT-CAT  1095

seq1  GCTAATTATAGCATGATCATA  1118
      ||||||   |||| |||||||
seq2  GCTAAT--AAGCA-GATCATA  1113