BAC Information

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BAC

Clone NameB6Ng01-056H17
Chromosome15 (Build37)
Map Location 80,564,775 - 80,682,224
singlet/doubletdoublet
Overlap geneTnrc6b
Upstream geneUnc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056H17.bB6Ng01-056H17.g
ACCDH878624DH878625
length1,059775
definitionDH878624|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H17, 5' end.DH878625|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,681,164 - 80,682,224)(80,564,775 - 80,565,544)
sequence
gaattctgctctgcatacaagttcacaacactgaagagcaatggagccga
cattcttgacactaagcagagaaaagctaaaaacagctgatctggactac
aactctccagtgctggcacttagtgtgcaaattcaaccgctacttccaac
tcatccattctgcaaacctactaccaccaacaaaaaaatccaccaaattc
aagccctcctgcttcttcaatgaaatcttccttaccaactcaaaatccaa
agaaatttgcacttttctgtacacaacactaccattgccctgcctcttgt
gtggctctacaggcattacggcagacatcatgccaccaccatcattagcc
tcagagcccataaaatggccttttgtagcatttctggtcatgacatctct
gcatttttacacaaccctcccttcctacccgggaggcctagaaacagatc
ttgctctttaacaaatactaggtgtctaacatgagccaggcacgtttcca
agcatgggaaaaggaagaaacaaagccaagcttcagcctgcagaaggaat
agggaataagcagggcatacaacaaaatacatgcttcgggtggcagcaag
gcaagctgaactgatggaccagaagaagagggtactgccttatctggcat
ggttgggaaaggcctctgatacggtagcctaggaacagaggtcattgagg
caaggcactcatctgtccgggaatagcaaatattaaggagcaagataaga
ggaatgagtgcttagaataaaggcattttcaaatcagacagcagatgtct
ttcctacacaggacacagcatcagattcacaaaaccctgtagtatcccgt
aggtatcatactgaaacctcctatagcagggcttatctacagcacacttg
cactgcactgcatgcactgcatagcacagcaatgggtatggaggtggcat
cagctggctcttcttgtcacttgcttcatacagatactgagaacacagag
gggctccatgtaatacgtggttgttgaaaaataaaatgaagaggggggag
ggagggagg
gaattcattgaacagagtgtgcatgggcagtaagaaggtgcagatagcaa
tagacttctaatgcttgacagtttggctgtgaagggagcacagaaacgat
gttagctgaaggtgatgtggggtgagagagggccaaagaattttccccaa
gtaggcgttctcactactcatattcgcccctcttttttatagacacctct
ctccttcctttccttttccctctatgcccgcctcttttctcccttttttg
accggatctaatttggtagcccagtttgacttcaagctctcagtcctgct
tctgcctccctactttttggattacaggtatgtgatgcaatatctgtcta
gggagacaaccttgagcttcaaagttgttgagaagaatgttctaagacag
agggagttatggctagttgcaaaattggagtttataaggagaataatatc
attttggtatttgaattttggtatttgagaggaggaaccttgaaagagag
tgaagtgtaccttcatgggaatggatctttgattcactgacaaataggaa
acagtgacctgaagcaatacgacagttacgcccagacatcaccagcatca
tggcgtttacaaagttgtgatcaggggggacttgagttttcggccagaat
ggccaaagggcagactcctgagacagagacggacgctgtcgacaacgact
ccactatctgtgatttactctgacttcttctataacttctctttggagtg
aagcttcccagtcgctgttcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80681164_80682224
seq2: B6Ng01-056H17.b_44_1102 (reverse)

seq1  CCTCCCT-CCTCCCCCCTC-TCATTTTATTCTTTCAACAA-CACGTATTT  47
      ||||||| ||||||||||| |||||||||| ||||||||| |||||| ||
seq2  CCTCCCTCCCTCCCCCCTCTTCATTTTATT-TTTCAACAACCACGTA-TT  48

seq1  ACATGGAGCCCCTCTGGTGTTCTCAGTATCTGTATGAAGCAAGTGACAAG  97
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATGGAGCCCCTCT-GTGTTCTCAGTATCTGTATGAAGCAAGTGACAAG  97

seq1  AAGAGCCAGGCTGATGCCACCTCCATACCCATTGCTGTGCTATGCAGTGC  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCA-GCTGATGCCACCTCCATACCCATTGCTGTGCTATGCAGTGC  146

seq1  AGTGCAGTGCAGTGC-AGTGTGCTGTAGATAAGCCCTGCTATAGGAGGTC  196
      | ||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  A-TGCAGTGCAGTGCAAGTGTGCTGTAGATAAGCCCTGCTATAGGAGGTT  195

seq1  TCAGTATTGATACCTAACGGGATACTACAGGGTTTTGTGAATCTGATGCT  246
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAGTA-TGATACCT-ACGGGATACTACAGGGTTTTGTGAATCTGATGCT  243

seq1  GTGTCCTGTGTAGG-AAGACATCTGCTGTCTGATTTGAAAATGCCTTTAT  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGTGTAGGAAAGACATCTGCTGTCTGATTTGAAAATGCCTTTAT  293

seq1  TCTAAGCACTCATTCCTCTTATCTTGCTCCTTAATATTTGCTATTCCCGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCACTCATTCCTCTTATCTTGCTCCTTAATATTTGCTATTCCCGG  343

seq1  ACAGATGAGTGCCTTGCCTCAATGACCTCTGTTCCTAGGCTACCGTATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGTGCCTTGCCTCAATGACCTCTGTTCCTAGGCTACCGTATCA  393

seq1  GAGGCCTTTCCCAACCATGCCAGATAAGGCAGTACCCTCTTCTTCTGGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTTCCCAACCATGCCAGATAAGGCAGTACCCTCTTCTTCTGGTC  443

seq1  CATCAGTTCAGCTTGCCCTGCTGCCACCCGAAGCATGTATTTTGTTGTAT  495
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATCAGTTCAGCTTGCCTTGCTGCCACCCGAAGCATGTATTTTGTTGTAT  493

seq1  GCCCTGCTTATTCCCTATTCCTTCTGCAGGCTGAAGCTTGGCTTTGTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTTATTCCCTATTCCTTCTGCAGGCTGAAGCTTGGCTTTGTTTC  543

seq1  TTCCTTTTCCCATGCTTGGAAACGTGCCTGGCTCATGTTAGACACCTAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCCCATGCTTGGAAACGTGCCTGGCTCATGTTAGACACCTAGT  593

seq1  ATTTGTTAAAGAGCAAGATCTGTTTCTAGGCCTCCCGGGTAGGAAGGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAAGAGCAAGATCTGTTTCTAGGCCTCCCGGGTAGGAAGGGAG  643

seq1  GGTTGTGTAAAAATGCAGAGATGTCATGACCAGAAATGCTACAAAAGGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTAAAAATGCAGAGATGTCATGACCAGAAATGCTACAAAAGGCC  693

seq1  ATTTTATGGGCTCTGAGGCTAATGATGGTGGTGGCATGATGTCTGCCGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGGCTCTGAGGCTAATGATGGTGGTGGCATGATGTCTGCCGTA  743

seq1  ATGCCTGTAGAGCCACACAAGAGGCAGGGCAATGGTAGTGTTGTGTACAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTAGAGCCACACAAGAGGCAGGGCAATGGTAGTGTTGTGTACAG  793

seq1  AAAAGTGCAAATTTCTTTGGATTTTGAGTTGGTAAGGAAGATTTCATTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCAAATTTCTTTGGATTTTGAGTTGGTAAGGAAGATTTCATTGA  843

seq1  AGAAGCAGGAGGGCTTGAATTTGGTGGATTTTTTTGTTGGTGGTAGTAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGAGGGCTTGAATTTGGTGGATTTTTTTGTTGGTGGTAGTAGG  893

seq1  TTTGCAGAATGGATGAGTTGGAAGTAGCGGTTGAATTTGCACACTAAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAATGGATGAGTTGGAAGTAGCGGTTGAATTTGCACACTAAGTG  943

seq1  CCAGCACTGGAGAGTTGTAGTCCAGATCAGCTGTTTTTAGCTTTTCTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGGAGAGTTGTAGTCCAGATCAGCTGTTTTTAGCTTTTCTCTG  993

seq1  CTTAGTGTCAAGAATGTCGGCTCCATTGCTCTTCAGTGTTGTGAACTTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTCAAGAATGTCGGCTCCATTGCTCTTCAGTGTTGTGAACTTGT  1043

seq1  ATGCAGAGCAGAATTC  1061
      ||||||||||||||||
seq2  ATGCAGAGCAGAATTC  1059

seq1: chr15_80564775_80565544
seq2: B6Ng01-056H17.g_68_836

seq1  GAATTCATTGAACAGAGTGTGCATGGGCAGTAAGAAGGTGCAGATAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATTCATTGAACAGAGTGTGCATGGGCAGTAAGAAGGTGCAGATAGCAA  50

seq1  TAGACTTCTAATGCTTGACAGTTTGGCTGTGAAGGGAGCAGAGAAACAGT  100
      |||||||||||||||||||||||||||||||||||||||| ||||||  |
seq2  TAGACTTCTAATGCTTGACAGTTTGGCTGTGAAGGGAGCACAGAAACGAT  100

seq1  GTTAGCTGAAGGTGATGTGGGGTGAGAGAGGGCCAAAGAATTTTCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGAAGGTGATGTGGGGTGAGAGAGGGCCAAAGAATTTTCCCCAA  150

seq1  GTAGGCGTTCTCACTACTCATATTCACCCCTCTTTTTTATAGACACCTCT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAGGCGTTCTCACTACTCATATTCGCCCCTCTTTTTTATAGACACCTCT  200

seq1  CTCCTTCCTTTCCTTTTCCCTCTATGCCCGCCTCTTTTCTCCCTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTTTCCTTTTCCCTCTATGCCCGCCTCTTTTCTCCCTTTTTTG  250

seq1  ACAGGATCTAATTTGGTAGCCCAGTTTGACTTCAAGCTCTCAGTCCTGCT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGATCTAATTTGGTAGCCCAGTTTGACTTCAAGCTCTCAGTCCTGCT  300

seq1  TCTGCCTCCCTACTTTTTGGATTACAGGTATGTGATGCAGTATCTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGCCTCCCTACTTTTTGGATTACAGGTATGTGATGCAATATCTGTCTA  350

seq1  GGGAGACAGTCTTGAGCTTCAAAGTTGTTGAGAAGAATGTTCTAAGACAG  400
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAACCTTGAGCTTCAAAGTTGTTGAGAAGAATGTTCTAAGACAG  400

seq1  AGGGAGTTATGGCTAGTTGCAGAATTGGAGTTTATAAGGAGAATAATATC  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGAGTTATGGCTAGTTGCAAAATTGGAGTTTATAAGGAGAATAATATC  450

seq1  ATTTTGGTATTTGAATTTTGGTATTTGAGAGGAGGAACCTTGGAAGAGAG  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTTGGTATTTGAATTTTGGTATTTGAGAGGAGGAACCTTGAAAGAGAG  500

seq1  TGGAGTGTTCCTTCATGGGAATGGATCTTTGATTAACTGACATTTAGGAA  550
      || ||||| ||||||||||||||||||||||||| |||||||  ||||||
seq2  TGAAGTGTACCTTCATGGGAATGGATCTTTGATTCACTGACAAATAGGAA  550

seq1  AAAGTTAAGTGAAAGAAGAGGAAAGTGAGGCCCAGACATAGCCAGCATCA  600
      | ||| |  ||||  || | || ||| | ||||||||||  |||||||||
seq2  ACAGTGACCTGAAGCAATACGACAGTTACGCCCAGACATCACCAGCATCA  600

seq1  TGGCAGTTACAAAGTTGTTTTCA-GGGGTACTTGAGTTAGTCGGCCAGAA  649
      ||||  ||||||||||||  ||| |||| |||||||||  ||||||||||
seq2  TGGCGTTTACAAAGTTGTGATCAGGGGGGACTTGAGTT-TTCGGCCAGAA  649

seq1  GGGCCAAAGGGCAGACT-AGGGGTCAGAGAGGGTCGTTGTTGACAATGAC  698
       ||||||||||||||||   | | |||||| || || ||| ||||| |||
seq2  TGGCCAAAGGGCAGACTCCTGAGACAGAGACGGACGCTGTCGACAACGAC  699

seq1  TCCACTTTCATTCTTTTACACTGAATTTAAACTATAACTTCTCTTTTGAG  748
      |||||| ||  |  ||||| ||| | ||   ||||||||||||||| |||
seq2  TCCACTATCTGTGATTTACTCTG-ACTTCTTCTATAACTTCTCTTTGGAG  748

seq1  TTAAAGTTTCCCAGTCACTGTT  770
       | ||| ||||||||| |||||
seq2  -TGAAGCTTCCCAGTCGCTGTT  769