BAC Information

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BAC

Clone NameB6Ng01-056P24
Chromosome15 (Build37)
Map Location 21,777,758 - 21,918,904
singlet/doubletdoublet
Overlap geneLOC100040351
Upstream geneCdh12
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056P24.bB6Ng01-056P24.g
ACCDH878995DH878996
length1,009773
definitionDH878995|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P24, 5' end.DH878996|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,917,870 - 21,918,904)(21,777,758 - 21,778,530)
sequence
gaattccctgagtcactggggataggctttgagagtttcaaaaagaggag
ctgcatggtctctaattgtgtgagatttaatgatctcactaacaaagctc
attagtttgtcaaactggacctcaccatacacttcatttgcctttgggtg
gtcttgaactccctttctgggataagtagatatctgtgttatgcttctga
aggaaaagtctgtcacaaaacaaagggaaaggttgctcttgtaggacgtg
atagttctataatgccgacagaaactcccgcaccctagagactgctttct
ccacacagctgaagaaattcctgtttgggtcttaactggacacttgccat
gcactggcttatcttggcctcctgcacttcatctatcatggttatacatt
atgcagttttgcctcaagggcacgggaaaggttggtgcatttaggcataa
cagcagaacttaataatcatctttagccccaggaggataaaaggtccgtc
ttgatgtttatatgtgttcttagacccagaatagagttttccaactgctg
gaagggtcacatgtccctgtgtctgtggaattccatgagatcagccctga
aagctgcagctctgacatacgttcacacaactatgtcagaattcattcta
aatttgacaggaaagttgaatagtattaagtagactcctgtagcagttta
aataatcttgcttttatttggtaaataaccttcatggatggtggataaag
acaaagtatattttccattaacaatgttttatttagggctttagcgctat
gctagtagttttccatgacacatctcactaaactggccttttgcttgttt
ccttttaccctggtaggcaataatggtctttacttttagttgacaaaggg
gaaaactagggagagaacagcattgggtatcagggtatcctgatttatta
agtcctatgggaaattttcttatgcagtgaattgtaggaaggactcactc
acactcaca
gaattcacttgagcctgaaagttcttgctctttaaaaacttactattgca
gaagtaatctttgaattttgtgctttatttcttaagaggggtaactcagg
gtttggagccttgtttagtggtgatgtgtacttgtttttacacaggatct
cggtttagttggcaacacacgaatgatggctcatgaccatcagtaatttc
aattccagggttctgacaccctacattgacattcttgatcagtctacaca
tgaatacgtgaagataaaaatactcgtgtgtgtgtgtgtgtgtgtgtgta
tgtgtagacacatataattaaaaaaaacacatctttaaaaatgaaaataa
aagaatgtagaaccccagccaacactgaaagggaagcacacaaaatgtaa
acgctgtagaaatgatgtaagtattttcagtagtggcttacggcattaaa
ccacatatagctaatttagcacattaaagcaaccatgtttcatttaaaca
atgtttttatttgaggattatgaggttttttgcagtttatttaatactat
tgttgtctgttgagataagccatgcacacacacgcatatacatgtgttca
tatgcatttcttgatcacacaccatgagacatataactttatagcttaaa
gtttgtcatggaaaaaatgcttgactttcagataagctcattctttaaaa
tcaaattacccgtgtgttcatttagcagtaacctttaaacaatcaatgac
tctatacttgctgtaatccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21917870_21918904
seq2: B6Ng01-056P24.b_48_1056 (reverse)

seq1  TGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-  49
                                      |||| ||||| ||| || 
seq2  --------------------------------TGTGAGTGTGAGTGAGTC  18

seq1  CTTCCTAC-ATTCACTGCATATGAAAATTT-CCATAGGACTT-ATAAATC  96
      |||||||| |||||||||||| |||||||| ||||||||||| |||||||
seq2  CTTCCTACAATTCACTGCATAAGAAAATTTCCCATAGGACTTAATAAATC  68

seq1  AGGATACCCTGATACCC-ATGCTGTTCTCT-CCTAGTTTTCCCCTTTGTC  144
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  AGGATACCCTGATACCCAATGCTGTTCTCTCCCTAGTTTTCCCCTTTGTC  118

seq1  AACTAAAAGTAAAGACCATTATTGCCTACCAGGGTAAAAAGGAAACAAGC  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTAAAAGTAAAGACCATTATTGCCTACCAGGGT-AAAAGGAAACAAGC  167

seq1  AAAAGGCCAGCTTAGTGAGATGTGTCATGGAAAACTACTAGCATAGCGCT  244
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCAGTTTAGTGAGATGTGTCATGGAAAACTACTAGCATAGCGCT  217

seq1  AAAGCCCTAAAT-AAACATTGTTAATGGAAAATATACTTTGTCTTTATCC  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTAAATAAAACATTGTTAATGGAAAATATACTTTGTCTTTATCC  267

seq1  ACCATCCATGAAGGTTATTTACCAAATAAAAGCAAGATTATTTAAACTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCATGAAGGTTATTTACCAAATAAAAGCAAGATTATTTAAACTGC  317

seq1  TACAGGAGTCTACTTAATACTATTCAACTTTCCTGTCAAATTTAGAATGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGTCTACTTAATACTATTCAACTTTCCTGTCAAATTTAGAATGA  367

seq1  ATTCTGACATAGTTGTGTGAACGTATGTCAGAGCTGCAGCTTTCAGGGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACATAGTTGTGTGAACGTATGTCAGAGCTGCAGCTTTCAGGGCT  417

seq1  GATCTCATGGAATTCCACAGACACAGGGACATGTGACCCTTCCAGCAGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATGGAATTCCACAGACACAGGGACATGTGACCCTTCCAGCAGTT  467

seq1  GGAAAACTCTATTCTGGGTCTAAGAACACATATAAACATCAAGACGGACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTCTATTCTGGGTCTAAGAACACATATAAACATCAAGACGGACC  517

seq1  TTTTATCCTCCTGGGGCTAAAGATGATTATTAAGTTCTGCTGTTATGCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTCCTGGGGCTAAAGATGATTATTAAGTTCTGCTGTTATGCCT  567

seq1  AAATGCACCAACCTTTCCCGTGCCCTTGAGGCAAAACTGCATAATGTATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACCAACCTTTCCCGTGCCCTTGAGGCAAAACTGCATAATGTATA  617

seq1  ACCATGATAGATGAAGTGCAGGAGGCCAAGATAAGCCAGTGCATGGCAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATAGATGAAGTGCAGGAGGCCAAGATAAGCCAGTGCATGGCAAG  667

seq1  TGTCCAGTTAAGACCCAAACAGGAATTTCTTCAGCTGTGTGGAGAAAGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTTAAGACCCAAACAGGAATTTCTTCAGCTGTGTGGAGAAAGCA  717

seq1  GTCTCTAGGGTGCGGGAGTTTCTGTCGGCATTATAGAACTATCACGTCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGGGTGCGGGAGTTTCTGTCGGCATTATAGAACTATCACGTCCT  767

seq1  ACAAGAGCAACCTTTCCCTTTGTTTTGTGACAGACTTTTCCTTCAGAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCAACCTTTCCCTTTGTTTTGTGACAGACTTTTCCTTCAGAAGC  817

seq1  ATAACACAGATATCTACTTATCCCAGAAAGGGAGTTCAAGACCACCCAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAGATATCTACTTATCCCAGAAAGGGAGTTCAAGACCACCCAAA  867

seq1  GGCAAATGAAGTGTATGGTGAGGTCCAGTTTGACAAACTAATGAGCTTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGAAGTGTATGGTGAGGTCCAGTTTGACAAACTAATGAGCTTTG  917

seq1  TTAGTGAGATCATTAAATCTCACACAATTAGAGACCATGCAGCTCCTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGATCATTAAATCTCACACAATTAGAGACCATGCAGCTCCTCTT  967

seq1  TTTGAAACTCTCAAAGCCTATCCCCAGTGACTCAGGGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTCTCAAAGCCTATCCCCAGTGACTCAGGGAATTC  1009

seq1: chr15_21777758_21778530
seq2: B6Ng01-056P24.g_67_839

seq1  GAATTCACTTGAGCCTGAAAGTTCTTGCTCTTTAAAAACTTACTATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAGCCTGAAAGTTCTTGCTCTTTAAAAACTTACTATTGCA  50

seq1  GAAGTAATCTTTGAATTTTGTGCTTTATTTCTTAAGAGGGGTAACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATCTTTGAATTTTGTGCTTTATTTCTTAAGAGGGGTAACTCAGG  100

seq1  GTTTGGAGCCTTGTTTAGTGGTGATGTGTACTTGTTTTTACACAGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGCCTTGTTTAGTGGTGATGTGTACTTGTTTTTACACAGGATCT  150

seq1  CGGTTTAGTTGGCAACACACGAATGATGGCTCATGACCATCAGTAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTAGTTGGCAACACACGAATGATGGCTCATGACCATCAGTAATTTC  200

seq1  AATTCCAGGGTTCTGACACCCTACATTGACATTCTTGATCAGTCTACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGGTTCTGACACCCTACATTGACATTCTTGATCAGTCTACACA  250

seq1  TGAATACGTGAAGATAAAAATACTCGTGTGTGTGTGTGTGTGTGTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACGTGAAGATAAAAATACTCGTGTGTGTGTGTGTGTGTGTGTGTA  300

seq1  TGTGTATACACATATAATTAAAAAAAACACATCTTTAAAAATGAAAATAA  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACACATATAATTAAAAAAAACACATCTTTAAAAATGAAAATAA  350

seq1  AAGAATGTAGAACCCCAGCCAACACTGAAAGGGAAGCACACAAAATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTAGAACCCCAGCCAACACTGAAAGGGAAGCACACAAAATGTAA  400

seq1  ACACTGTAAAAATGATGTAAATATTTTCAGTAGTGGCTTACTTCATTAAA  450
      || ||||| ||||||||||| ||||||||||||||||||||  |||||||
seq2  ACGCTGTAGAAATGATGTAAGTATTTTCAGTAGTGGCTTACGGCATTAAA  450

seq1  CCACATATAGCTAATTTAGCACATTAAAGCAACCATGTTTCATTTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATAGCTAATTTAGCACATTAAAGCAACCATGTTTCATTTAAACA  500

seq1  ATGTTTTTA-TTGAGGATTATGAGGTTTTTTGCAGTTTATTTAATACTAT  549
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTATTTGAGGATTATGAGGTTTTTTGCAGTTTATTTAATACTAT  550

seq1  TGTTGTCTGTTGAGATAAGCCATGCACACACACGCATATACATGTGTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGTTGAGATAAGCCATGCACACACACGCATATACATGTGTTCA  600

seq1  TATGCATTTCTTGATCACACACCATGAGACATATAACTTTATAGCTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTCTTGATCACACACCATGAGACATATAACTTTATAGCTTAAA  650

seq1  GTTTGTCATGGAAAAAATGCTTGACTTTCAGATAAGCTCATTCATTAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  GTTTGTCATGGAAAAAATGCTTGACTTTCAGATAAGCTCATTC-TTTAAA  699

seq1  ATCAAATTACCCGTGTGTTCATTTTAGCAGTAACCTTTAAACAATCAATG  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCAAATTACCCGTGTGTTCA-TTTAGCAGTAACCTTTAAACAATCAATG  748

seq1  ACTCTATACTTGCTGTAAT-CATTC  773
      ||||||||||||||||||| |||||
seq2  ACTCTATACTTGCTGTAATCCATTC  773