BAC Information

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BAC

Clone NameB6Ng01-057D13
Chromosome15 (Build37)15 (Build37)
Map Location 102,031,971 - 102,032,49131,381,776 - 31,382,898
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad
Downstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057D13.bB6Ng01-057D13.g
ACCDH879154DH879155
length1,0001,100
definitionDH879154|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D13, 5' end.DH879155|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,031,971 - 102,032,491)(31,381,776 - 31,382,898)
sequence
gaattctctaagttatttatttatttatttgtttgtttgtttgtttattg
atttatttatttagagagtttgtctattatgtcgttttggctgtccagga
acttgctatgcagactgtccagcagatccacctgcctgtccagtgctgag
attaaaagtgtgctcccctatgcctgatgctaagtagctcttaaactgtg
aaactgtgaactgggtgaaattaggttaaaatagattttgaataaaaaat
tcacattaagtgcagattttttttctctaacatttaaattttcatttaca
ttgatgttctgccttcatgtatgtctgtgtgagggtgccaagtctcttag
aactggaattatagacagttatgaactaccatgtgaatactgggatttga
acccaggtcctttggaagaacagccagggctcttaaccactaagccatct
gtccagcttcttcagtgcagttttaatgcagttaactgtcagacgccatc
taggaaaggctaaagacatgcaaatgaatattttggagctggcccactgt
tttgcacagcctgagatgagagagctctatgaggcaagatcccaagaaac
ttcatcccaggattgcttcttgctgcagatctgccttttcctgtcactat
tacatcgcctaatgattcctgggcattagcccaccttattgagcagattt
tctgcagattcacatgaagatgtactctcacgtagtgatgctgtatagat
gattaatgaataatggattaatgatttcaaaattcctgataatgatttta
tacaattcttaaattgatatgagtaatctcagctccctgtagaataaaag
ctgcaatagagctctgtaacccttcatgtgccatgggctaactgcactag
acaaagaaagcagctcagaacaaagttgtaatcaagaaagcatttcttct
agattaggtttgagaccattatctggtatttaaaggtcataaacttggga

gaattcccttcggatttggccagcacgaggccttgtgccaggcaaggtct
taagccacagtcaaagaacttgtagccaggaagatgaacatgaaattaag
caccagggcaccaggtatgtctatgagttatcagaaaccatctaaatctg
aaacatagatagatggacatggatagtgaagactgaatagattaaaggca
accccctctctcttcaccctttagggtcaactccacctataactactaag
acttttgtgctcctctctgtggtttcgttaatgagctaaggagtggtgcg
gacagccacgagagaaacagatgcagaactgttgacctaaaagtccaggc
cccggttacaatgctgtggcttggtggattcacacctattcatagttgtt
ccctcatcggcagtctaatgaatcagggatttcttgtgtaaggcttcaaa
aaaactctctctgtagtattaataaatgtgccaataggggcggagacttg
aagtgcaaataaactttcataaagacaccctagcccttctctctaaggct
cgagcatatgtaatatcgctgaggggttattgagagaactgacaaaggga
ccgctgggctcacaggtgaccctgacggagctaagtaagacatccaggtc
ctgtcccctgaagccccgtgagaggtactctacatggcaagcgtctttgc
acaattaaggactttagatgggggaaactatcctgaagaaacggtatggc
tcctaaatgtatcacaggactcctcagagaggaaagcagaagagaaccca
cggattgtagaagggccaggaagttccaacagccgagtctgatatggaag
cagccaccccaaacgcctgttgcctgctcagatgttttgttgcttttacc
tccagagctgtgttttttaaagtcgagtgttaaacagccaaagtacgaaa
ccaccttagctaataagtcaaagaagttagcaattttggctaaaatagtt
attctcgtgattaaaaagtgcacagttttcttgtaaacgaaagaatgagg
gtagaaataatggtcagccttgaaagggtctctgtcttgtttctagagtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102031971_102032491
seq2: B6Ng01-057D13.b_62_475 (reverse)

seq1  CACTGGCTGCTCTTCCAAAGGACCTAGGTTCAATTCCCAGCACCCTTGTG  50
      | ||||||| ||||||||||||||| ||||||| |||||| |        
seq2  CCCTGGCTGTTCTTCCAAAGGACCTGGGTTCAAATCCCAGTA--------  42

seq1  GTGGCTCATATTGTTACTTCAGGTGGCCCATAAGCATCAGTAACTCCATT  100
           ||| | || || ||||                   |||||    |
seq2  ----TTCACA-TGGTAGTTCA-------------------TAACT---GT  65

seq1  CTAAGTATATTCCACACCCTTGCCTGGCCTCTAAGGGTACCAGGCACTCA  150
      |||  || ||||||               |||||| | ||  ||||| | 
seq2  CTA--TA-ATTCCA-------------GTTCTAAGAG-ACTTGGCACCC-  97

seq1  AGTGTTACACAGACATACACGTAAGCAACACATGCATACACACATAAAAA  200
          | ||||||||||||| | | |||  ||||  ||       ||||  
seq2  ----TCACACAGACATACATGAAGGCAGAACATCAAT------GTAAA--  135

seq1  CAAAAAATTTAAATATCTAG-TAATAAGAAACAATAACAAGAGTGA---T  246
         ||||||||||| | |||  || || || |   |   |  ||||   |
seq2  -TGAAAATTTAAATGT-TAGAGAAAAAAAATCTGCACTTAATGTGAATTT  183

seq1  TATCTTCAAGAGCTTGGCTAGAAGAAAAAATTATGTAGTTTTGTATTCTA  296
      | | ||||| | ||    |  ||   ||  | |   ||||         |
seq2  TTTATTCAAAATCT--ATTTTAACCTAATTTCACCCAGTT--------CA  223

seq1  TAGACTGGCAATGGATTAGGTGGTTCTTTGTTTTCTAAAGATTGTGGGGG  346
       ||  |  ||   | ||| | | | ||| |  |     |     | ||||
seq2  CAGTTTCACA---GTTTAAGAGCTACTTAGCATCAGGCA-----TAGGGG  265

seq1  CTGGAGAGATGGCTCAGTGGTTCAAATCCCAGCA----ACCACATGGTGG  392
                 || ||    ||  |||| |||||    ||     |||||
seq2  ----------AGCACA---CTTTTAATCTCAGCACTGGACAGGCAGGTGG  302

seq1  CTC------ACAACCATCCGTAATGAGATCTGACTTCCTCTTCTGGAGTG  436
       ||      |||  | | | ||   || ||            |||||  |
seq2  ATCTGCTGGACAGTC-TGCATAGCAAGTTC------------CTGGACAG  339

seq1  TCCAAA-GACAGCTAGAGTATACTTACATATGATAAATAAATAAATCTTT  485
       | ||| |||    | | || ||  || | |  ||||||||||||||   
seq2  CCAAAACGAC----ATAATAGACAAAC-TCT-CTAAATAAATAAATC---  380

seq1  AAAATAAATAAACAAACAAACAAATAAATAAATAAA  521
        |||||| |||||||||||||||||||||||||||
seq2  --AATAAACAAACAAACAAACAAATAAATAAATAAA  414

seq1: chr15_31381776_31382898
seq2: B6Ng01-057D13.g_68_1167

seq1  GAATTCCCTTCGGATTTGGCCAGCACGAGGCCTTGTGCCAGGCAAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCGGATTTGGCCAGCACGAGGCCTTGTGCCAGGCAAGGTCT  50

seq1  TAAGCCACAGTCAAAGAACTTGTAGCCAGGAAGATGAACATGAAATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAGTCAAAGAACTTGTAGCCAGGAAGATGAACATGAAATTAAG  100

seq1  CACCAGGGCACCAGGTATGTCTATGAGTTATCAGAAACCATCTAAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCACCAGGTATGTCTATGAGTTATCAGAAACCATCTAAATCTG  150

seq1  AAACATAGATAGATGGACATGGATAGTGAAGACTGAATAGATTAAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGATAGATGGACATGGATAGTGAAGACTGAATAGATTAAAGGCA  200

seq1  ACCCCCTCTCTCTTCACCCTTTAGGGTCAACTCCACCTATAACTACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCTCTCTTCACCCTTTAGGGTCAACTCCACCTATAACTACTAAG  250

seq1  ACTTTTGTGCTCCTCTCTGTGGTTTCGTTAATGAGCTAAGGAGTGGTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGCTCCTCTCTGTGGTTTCGTTAATGAGCTAAGGAGTGGTGCG  300

seq1  GACAGCCACGAGAGAAACAGATGCAGAACTGTTGACCTAAAAGTCCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCACGAGAGAAACAGATGCAGAACTGTTGACCTAAAAGTCCAGGC  350

seq1  CCCGGTTACAATGCTGTGGCTTGGTGGATTCACACCTATTCATAGTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTTACAATGCTGTGGCTTGGTGGATTCACACCTATTCATAGTTGTT  400

seq1  CCCTCATCGGCAGTCTAATGAATCAGGGATTTCTTGTGTAAGGCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCGGCAGTCTAATGAATCAGGGATTTCTTGTGTAAGGCTTCAAA  450

seq1  AAAACTCTCTCTGTAGTATTAATAAATGTGCCAATAGGGGCGGAGACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTCTCTGTAGTATTAATAAATGTGCCAATAGGGGCGGAGACTTG  500

seq1  AAGTGCAAATAAACTTTCATAAAGACACCCTAGCCCTTCTCTCTAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAATAAACTTTCATAAAGACACCCTAGCCCTTCTCTCTAAGGCT  550

seq1  CGAGCATATGTAATATCGCTGAGGGGTTATTGAGAGAACTGACAAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATATGTAATATCGCTGAGGGGTTATTGAGAGAACTGACAAAGGGA  600

seq1  CCGCTGGGCTCACAGGTGACCCTGACGGAGCTAAGTAAGACATCCAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGGCTCACAGGTGACCCTGACGGAGCTAAGTAAGACATCCAGGTC  650

seq1  CTGTCCCCTGAAGCCCCGTGAGAGGTACTCTACATGGCAAGCGTCTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCTGAAGCCCCGTGAGAGGTACTCTACATGGCAAGCGTCTTTGC  700

seq1  ACAATTAAGGACTTTAGATGGGGGAAACTATCCTGAAGAAACGGTATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAGGACTTTAGATGGGGGAAACTATCCTGAAGAAACGGTATGGC  750

seq1  TCCTAAATGTATCACAGGACTCCTCAGGAGAGGAAGGCAGAAGAGAACCC  800
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TCCTAAATGTATCACAGGACTCCTCA-GAGAGGAAAGCAGAAGAGAACCC  799

seq1  ACGGATTGTAGAAGGGCCAGGAAGTTCCAACAGCCGAGTCTGATATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATTGTAGAAGGGCCAGGAAGTTCCAACAGCCGAGTCTGATATGGAA  849

seq1  GCAGCCACCCCAAACGCCTGTTGCCTGCTCCAGATGTTTTGTTGCTTTTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAGCCACCCCAAACGCCTGTTGCCTGCT-CAGATGTTTTGTTGCTTTTA  898

seq1  CCTCCAGAGCTGTCGTTTTTTAAAAGTCGAGTTGTTAAAACAGCCAAAAG  950
      ||||||||||||| ||||||| ||||||||| |||| |||||||| ||||
seq2  CCTCCAGAGCTGT-GTTTTTT-AAAGTCGAG-TGTT-AAACAGCC-AAAG  943

seq1  TAACGAAACCACCTTAGCTAATATAGTTCAGAGAAAGTTAGCAAATTTTG  1000
      | ||||||||||||||||||||| || ||| || |||||||| |||||||
seq2  T-ACGAAACCACCTTAGCTAATA-AG-TCAAAG-AAGTTAGC-AATTTTG  988

seq1  GCTAAAAATAGTTATTCTCGTGATTTAAAAAGTGGCACAGTTCTCTTGTA  1050
      ||| ||||||||||||||||||| ||||||||| |||||||| |||||||
seq2  GCT-AAAATAGTTATTCTCGTGA-TTAAAAAGT-GCACAGTTTTCTTGTA  1035

seq1  AAACCGAAAGAATGAGTGTTAAGATTATAATGGTCAGGCCCTTGAAAGGG  1100
      ||  |||||||||||| ||  |||  |||||||||||  |||||||||||
seq2  AA--CGAAAGAATGAGGGT--AGA-AATAATGGTCAG--CCTTGAAAGGG  1078

seq1  TTCCTGTCCTTGTTTCTAGAGTG  1123
      |  |||| |||||||||||||||
seq2  TCTCTGT-CTTGTTTCTAGAGTG  1100