BAC Information

Click to search

BAC

Clone NameB6Ng01-058A16
Chromosome15 (Build37)
Map Location 17,217,189 - 17,218,310
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A16.bB6Ng01-058A16.g
ACCDH879729DH879730
length1,2961,099
definitionDH879729|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A16, 5' end.DH879730|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacgaggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctccccc
tttccttttaataagagcaaataggccacccatattaatgagagtggaga
tagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggattag
ctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgtg
tcgttttgcctgggggaagggaactaggacactgaaccttcatgaaagat
gacatgtctccctagaataggctcatatatgccgcagagcctttccattg
cagtgcttagccgtgcaactctctcgggctgctgaagcacactcactcta
tcccgtgcaatgagactagcctcatgggatataagagctgagtggccagc
gacctattgcctaagcatagatatatcaggggaagctccatgttctagtc
ctgcaagcgcctgggcaataaccaccttgtctctcctagtttgggcctta
agcttacagaccaatcaaagaagcaacactaatccacagcaaagtgtatc
tccaaataatattaatcccacccattttttaaagaaggaaaatgctgagg
agatccaattgggtaatcctttggtcagcgacaggtccaagcgcgtggag
ttgacctgaagtctcaattcccgaaggatctgttcaaattcagccatcca
attctgtaacatatactgaaaagactttttgacaattagctgccctagta
aatttaacatactgaatggaaataacacacaatcccggaaacttttgttc
acatccctgctgagttatttgtcataatacatctagtgtatctggacaag
atctatgagttgattaaccagcatgagacctctctttaatttgacattag
ctgaggcctgttcatctatgactgtagtcactgaaggctgacaaatgtta
tggtgtcagtctctggactgtcgacagagccaaggctttctgaatcacgc
atcccagttctagttatgtaaaagacagagaattcctgacattaactcac
cctctagagtggaaatgtgcgaatattcccaccgctctttattagcctgc
ctccacacaaggaccaacttcctctggccgtggttttcggtgatcg
gaattcaggttgggcttcctcagatgatagccaaaggacagaaagccaga
gaaataagcctgcaatctgccaagcttgcttcgttgctactgttgctgct
gttgtttttgtttttgatgatgatgatgacgacgacaatgaggatgacta
caacgatgatgataataatgatgatgatattaaacattcattctatcatt
tggggatgacaatgtttattctgtggtatatattagtaagcatatacttt
actgttttgcattttataactgctctcaattaaatgatgtcatgattctc
agaagattttcattctgtgtttttaaacaattttagtactattaatattt
ttgaggactcttaaactaacaaattttgcattatgagatggtcacatgcg
tttgtgaccataaatcatgatggttggcaattctcaacagtcatggccta
tataagagacatggctttatgtgtaatgtccaaaattacttggtccttat
tctaagtttccaatcacttattcattactgattgttgatatatttacttt
atgtctttaaaatttgcatcaataattccttgatctatttggatgataca
atttttaagaaactatacaatatatactttataacacctacttactcagg
ctatagatataaggtgtgacattttatattaatacaataaacaccctttt
cattatataaaactgaaatgttttctctattttttattttttattaacca
ttccattcatttacatctcaaatgatatcccacttccaagttacccctct
acaatcccacaagcccacaacctcttctcctcccttcctgttgcctctat
gaagttgcttcgcacccactatttcccgcacctccagccttcccctatgt
ggggcatcaaactctacaggactaggcttcccctcccattcatgtcagac
agcatctctgctaccatgtttctggagcatggatcctcctgtacattctt
ggtatggtctagtctgggaacactgggtggtcgacagctgatgtcatcct
tggggtggaatatccccacctcagtcctctgccagctctcccacatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17217189_17218310
seq2: B6Ng01-058A16.g_68_1166 (reverse)

seq1  ACTA-GTGGGAGAGCTGGCAGAAGGACTAGAAGTGTGGGGTATTTCAACC  49
      |||| |||||||||||||||| |||||| || ||| ||| || ||| |||
seq2  ACTATGTGGGAGAGCTGGCAG-AGGACT-GAGGTG-GGGATA-TTCCACC  46

seq1  CCATAGGATGAACATCAGCTGGTCGGACCACCCAGTGTTCCCAGGACTAG  99
      ||| |||||| ||||||||| ||| |||||||||||||||||| ||||||
seq2  CCA-AGGATG-ACATCAGCT-GTC-GACCACCCAGTGTTCCCA-GACTAG  91

seq1  ACCATTAACCAAGGAATGTACAGGGAGGGATCCATTGCTCCAGAGACATG  149
      |||||  ||||| |||||||||||   ||||||| ||||||||| |||| 
seq2  ACCAT--ACCAA-GAATGTACAGG--AGGATCCA-TGCTCCAGAAACAT-  134

seq1  GGTAGCAGAGAATGGCCTTGTCTGACATGAATGGGAGGGGAAGCCCTTAG  199
      |||||||||| |||    |||||||||||||||||||||||||||  |||
seq2  GGTAGCAGAG-ATG---CTGTCTGACATGAATGGGAGGGGAAGCC--TAG  178

seq1  TCCTGTAGAGTTTTGATGCCCCAACATAGGGGAAGGCTGGAGGTGCGGGA  249
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TCCTGTAGAG-TTTGATGCCCC-ACATAGGGGAAGGCTGGAGGTGCGGGA  226

seq1  AATAGTGGGTGCGAAGCAACTTCATAGAGGCAACAGGAAGGGAGGAGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGGTGCGAAGCAACTTCATAGAGGCAACAGGAAGGGAGGAGAAG  276

seq1  AGGTTGTGGGCTTGTGGGATTGTAGAGGGGTAACTTGGAAGTGGGATATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGGCTTGTGGGATTGTAGAGGGGTAACTTGGAAGTGGGATATC  326

seq1  ATTTGAGATGTAAATGAATGGAATGGTTAATAAAAAATAAAAAATAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATGTAAATGAATGGAATGGTTAATAAAAAATAAAAAATAGAGA  376

seq1  AAACATTTCAGTTTTATATAATGAAAAGGGTGTTTATTGTATTAATATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCAGTTTTATATAATGAAAAGGGTGTTTATTGTATTAATATAA  426

seq1  AATGTCACACCTTATATCTATAGCCTGAGTAAGTAGGTGTTATAAAGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACACCTTATATCTATAGCCTGAGTAAGTAGGTGTTATAAAGTAT  476

seq1  ATATTGTATAGTTTCTTAAAAATTGTATCATCCAAATAGATCAAGGAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATAGTTTCTTAAAAATTGTATCATCCAAATAGATCAAGGAATT  526

seq1  ATTGATGCAAATTTTAAAGACATAAAGTAAATATATCAACAATCAGTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCAAATTTTAAAGACATAAAGTAAATATATCAACAATCAGTAAT  576

seq1  GAATAAGTGATTGGAAACTTAGAATAAGGACCAAGTAATTTTGGACATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTGATTGGAAACTTAGAATAAGGACCAAGTAATTTTGGACATTA  626

seq1  CACATAAAGCCATGTCTCTTATATAGGCCATGACTGTTGAGAATTGCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAGCCATGTCTCTTATATAGGCCATGACTGTTGAGAATTGCCAA  676

seq1  CCATCATGATTTATGGTCACAAACGCATGTGACCATCTCATAATGCAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGATTTATGGTCACAAACGCATGTGACCATCTCATAATGCAAAA  726

seq1  TTTGTTAGTTTAAGAGTCCTCAAAAATATTAATAGTACTAAAATTGTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTTTAAGAGTCCTCAAAAATATTAATAGTACTAAAATTGTTTA  776

seq1  AAAACACAGAATGAAAATCTTCTGAGAATCATGACATCATTTAATTGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGAATGAAAATCTTCTGAGAATCATGACATCATTTAATTGAGA  826

seq1  GCAGTTATAAAATGCAAAACAGTAAAGTATATGCTTACTAATATATACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATAAAATGCAAAACAGTAAAGTATATGCTTACTAATATATACCA  876

seq1  CAGAATAAACATTGTCATCCCCAAATGATAGAATGAATGTTTAATATCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAACATTGTCATCCCCAAATGATAGAATGAATGTTTAATATCAT  926

seq1  CATCATTATTATCATCATCGTTGTAGTCATCCTCATTGTCGTCGTCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTATTATCATCATCGTTGTAGTCATCCTCATTGTCGTCGTCATCA  976

seq1  TCATCATCAAAAACAAAAACAACAGCAGCAACAGTAGCAACGAAGCAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCAAAAACAAAAACAACAGCAGCAACAGTAGCAACGAAGCAAGC  1026

seq1  TTGGCAGATTGCAGGCTTATTTCTCTGGCTTTCTGTCCTTTGGCTATCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGATTGCAGGCTTATTTCTCTGGCTTTCTGTCCTTTGGCTATCAT  1076

seq1  CTGAGGAAGCCCAACCTGAATTC  1122
      |||||||||||||||||||||||
seq2  CTGAGGAAGCCCAACCTGAATTC  1099