BAC Information

Click to search

BAC

Clone NameB6Ng01-061B09
Chromosome15 (Build37)
Map Location 28,552,627 - 28,691,000
singlet/doubletdoublet
Overlap geneLOC100040689, LOC100040702, LOC667153
Upstream geneLOC100040622, BC052328, Trio, LOC667126, Dnahc5, EG382974, LOC100040675
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061B09.bB6Ng01-061B09.g
ACCDH881867DH881868
length3191,105
definitionDH881867|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B09, 5' end.DH881868|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,552,627 - 28,552,945)(28,689,886 - 28,691,000)
sequence
atttcaaaatatgatttttgtttatcaactttctacatttacaagtatat
aataacagaaacaacctaaatagaagaaagaaacaaatcatttaatggga
catttctttgccctctcataggatatctgcaggttcaggcgaggggagag
aacccagtttagagtttctctggggctgagtggattggtgaatgtcaaga
cccaaaacaaacacacctagcctggagtcagtcaaagcaggaactcattt
tattctatcagtcttttgtttatatagggttgaagaagaaggtggggatt
tttggtgagatttttggta
gaattcagtatggagtgaagaatggcctcaaactgattataattctcatg
ctctggcaccctaagtgctgagattgtatgtgtttatcaccatgccaacc
tctagtcatcttaacttacaaaaaagaaataaaaatgcaaaacaaccaat
agtcatcatacacacaaacatgcatgaagcttgtgaaatattaaataagc
taaaaatattgatatagctatggtctggttcaagaaaattgtttgaaata
cattaaagctaaggatacaggggacagaactcaaaatgactaatgaagga
tcatattaacctatcattatccaaaggaatatggcaagctaattagatgt
caggaagtttatttacatgctattgctccatgtaacaagtgaatgaaaaa
taaaaagaagtcactagagaagaaaaaaccctcaacgtttgtttcactgt
atcctcagttgtggagcacagcaatttctcccagcaaggaattaacacaa
atgtgctaagttctacagaaatattatgagtggatttcagaatctctgtg
ttccagtcttgtctttggccttaggtaatactataaagataaagtggata
actatgtccaatgaattttgccaatactatgtgaatagtaaataattctc
tatttgcattcatctaaactgaagagtatattaacacttttatcaatcaa
aaattatatatacatatatgtagacatatgtgtatatatgtatatatatg
tatacaaataaacatatgtatacaaataaacatatggggcatattttata
tttttagtagagattctaatctttattggttctctctcaatcctgtacaa
tgacgtggctcaccatccagaacaaggatgagtcagagcagtgttttgac
aaatagatccctattcaaacatctgtgaacagcctgtatacagctttctt
cccacctcccacatattcatgaataatagatgatatacttattagcctaa
tggctgattaatctctgttacctagaagtgacaggactgcatacaatgat
gttactgtttagaacatcgaaaggtgctacttaaaagcaattaactttta
tctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28552627_28552945
seq2: B6Ng01-061B09.b_54_372

seq1  ATTTCAAAATATGATTTTTGTTTATCAACTTTCTACATTTACAAGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAATATGATTTTTGTTTATCAACTTTCTACATTTACAAGTATAT  50

seq1  AATAACAGAAACAACCTAAATAGAAGAAAGAAACAAATCATTTAATGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGAAACAACCTAAATAGAAGAAAGAAACAAATCATTTAATGGGA  100

seq1  CATTTCTTTGCCCTCTCATAGGATATCTGCAGGTTCAGGCGAGGGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTGCCCTCTCATAGGATATCTGCAGGTTCAGGCGAGGGGAGAG  150

seq1  AACCCAGTTTAGAGTTTCTCTGGGGCTGAGTGGATTGGTGAATGTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTTTAGAGTTTCTCTGGGGCTGAGTGGATTGGTGAATGTCAAGA  200

seq1  CCCAAAACAAACACACCTAGCCTGGAGTCAGTCAAAGCAGGAACTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACAAACACACCTAGCCTGGAGTCAGTCAAAGCAGGAACTCATTT  250

seq1  TATTCTATCAGTCTTTTGTTTATATAGGGTTGAAGAAGAAGGTGGGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATCAGTCTTTTGTTTATATAGGGTTGAAGAAGAAGGTGGGGATT  300

seq1  TTTGGTGAGATTTTTGGTA  319
      |||||||||||||||||||
seq2  TTTGGTGAGATTTTTGGTA  319

seq1: chr15_28689886_28691000
seq2: B6Ng01-061B09.g_71_1175 (reverse)

seq1  TTAGTTAAAAGTTTAATTGCTTTTAAGGTAGCACCTTTCTGTGGTTCTTA  50
      |||| |||||| |||||||||||||| |||||||||||| |  |||| ||
seq2  TTAGATAAAAG-TTAATTGCTTTTAA-GTAGCACCTTTC-GATGTTC-TA  46

seq1  AACAGTAACATCATTGTATGCAGTCCTGTCAACTTCTAAGTAACAGAGAT  100
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AACAGTAACATCATTGTATGCAGTCCTGTC-ACTTCTAGGTAACAGAGAT  95

seq1  TAATCAGCCATTAGGCTAATTAAGTATATCATCTATTATTTCATGAATAT  150
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TAATCAGCCATTAGGCTAA-TAAGTATATCATCTATTA-TTCATGAATAT  143

seq1  GTGGGAGGTGGGAAGGAAAGCTGTAATACAGGCTTGTTCACAGATGTTTG  200
      |||||||||||||| ||||||||| |||||||| ||||||||||||||||
seq2  GTGGGAGGTGGGAA-GAAAGCTGT-ATACAGGC-TGTTCACAGATGTTTG  190

seq1  AATAGGGATCTATTTGTCAAAACACTGCTCTGACTCATCCTTGTTCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGATCTATTTGTCAAAACACTGCTCTGACTCATCCTTGTTCTGGA  240

seq1  TGGTGAGCCACGTCATTGTACAGGATTTGAGAGAGAACCAAT-AAGATTA  299
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TGGTGAGCCACGTCATTGTACAGGA-TTGAGAGAGAACCAATAAAGATTA  289

seq1  GAATCTCTACTAAAAATATAAAATATGCCCCATATGTTTATTTGTATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTACTAAAAATATAAAATATGCCCCATATGTTTATTTGTATACA  339

seq1  TATGTTTATTTGTATACATATATATACATATATACACATATGTCTACATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATTTGTATACATATATATACATATATACACATATGTCTACATA  389

seq1  TATGTATATATAATTTTTGATTGATAAAAGTGTTAATATACTCTTCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATAATTTTTGATTGATAAAAGTGTTAATATACTCTTCAGTT  439

seq1  TAGATGAATGCAAATAGAGAATTATTTACTATTCACATAGTATTGGCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATGCAAATAGAGAATTATTTACTATTCACATAGTATTGGCAAA  489

seq1  ATTCATTGGACATAGTTATCCACTTTATCTTTATAGTATTACCTAAGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGGACATAGTTATCCACTTTATCTTTATAGTATTACCTAAGGCC  539

seq1  AAAGACAAGACTGGAACACAGAGATTCTGAAATCCACTCATAATATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGACTGGAACACAGAGATTCTGAAATCCACTCATAATATTTCT  589

seq1  GTAGAACTTAGCACATTTGTGTTAATTCCTTGCTGGGAGAAATTGCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTTAGCACATTTGTGTTAATTCCTTGCTGGGAGAAATTGCTGTG  639

seq1  CTCCACAACTGAGGATACAGTGAAACAAACGTTGAGGGTTTTTTCTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAACTGAGGATACAGTGAAACAAACGTTGAGGGTTTTTTCTTCTC  689

seq1  TAGTGACTTCTTTTTATTTTTCATTCACTTGTTACATGGAGCAATAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTCTTTTTATTTTTCATTCACTTGTTACATGGAGCAATAGCAT  739

seq1  GTAAATAAACTTCCTGACATCTAATTAGCTTGCCATATTCCTTTGGATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAACTTCCTGACATCTAATTAGCTTGCCATATTCCTTTGGATAA  789

seq1  TGATAGGTTAATATGATCCTTCATTAGTCATTTTGAGTTCTGTCCCCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTTAATATGATCCTTCATTAGTCATTTTGAGTTCTGTCCCCTGT  839

seq1  ATCCTTAGCTTTAATGTATTTCAAACAATTTTCTTGAACCAGACCATAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGCTTTAATGTATTTCAAACAATTTTCTTGAACCAGACCATAGC  889

seq1  TATATCAATATTTTTAGCTTATTTAATATTTCACAAGCTTCATGCATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAATATTTTTAGCTTATTTAATATTTCACAAGCTTCATGCATGTT  939

seq1  TGTGTGTATGATGACTATTGGTTGTTTTGCATTTTTATTTCTTTTTTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGATGACTATTGGTTGTTTTGCATTTTTATTTCTTTTTTGTA  989

seq1  AGTTAAGATGACTAGAGGTTGGCATGGTGATAAACACATACAATCTCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGATGACTAGAGGTTGGCATGGTGATAAACACATACAATCTCAGC  1039

seq1  ACTTAGGGTGCCAGAGCATGAGAATTATAATCAGTTTGAGGCCATTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGTGCCAGAGCATGAGAATTATAATCAGTTTGAGGCCATTCTTC  1089

seq1  ACTCCATACTGAATTC  1115
      ||||||||||||||||
seq2  ACTCCATACTGAATTC  1105