BAC Information

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BAC

Clone NameB6Ng01-061I03
Chromosome15 (Build37)
Map Location 28,174,177 - 28,260,358
singlet/doubletdoublet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061I03.bB6Ng01-061I03.g
ACCDH882166DH882167
length1,103591
definitionDH882166|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I03, 5' end.DH882167|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,259,242 - 28,260,358)(28,174,177 - 28,174,767)
sequence
gaattctgctaaatctggagccatgccccagctttctgcttcgtataata
attacaagagttctatattccaaatggtagcatatatgaggtgaataatt
aaaattccattatccaaccactgtggaatacagctggcagttctaaaaaa
ttaaaaatgaagcaatcaggccaggtgcatgggcaaaggcccattccagc
acctggaaaataccgaaggatttcagcttcaagactaaatggcaaattcc
aggccaacgtgtataacaaacagagtgagacattgtcttaaagacttaaa
aagtattccatatgatgcaacactcccagtctcaaagggatgtttgaaca
ataatatgtaatattcataccctactgctcacagaagatagcagggagca
gcctagatgccgagatgtcgagatgccctgccgcagatgaacgaagaagc
aaaacacagcccttttacacagtggagcattacatagtcacgtaaagaag
gaactccacaccacatcacacatgaacctgaagatgttacagccacagaa
gaacactgtatgattttatttacatgagttagctattaagttgctagaaa
attagaatagtggctgctgggggctgggaggtgggaaagaggagctgtca
catcatagttttattatttagtaatgaaagaaattatgaaaattttctgt
atatgttataaatatgcctataatgaactgtacacttaaaatggctgata
tagtatgttacatattttacaaaataaaattataattaaattaaaacaaa
aataaaattgaaagccattggttcacttaagggagtgtcacacctcactc
ggtgctaatgtattgagaatgggatacagaaagcattcaatgtcagttcc
tgaattcaaggaattcaatctctaagaagaacaagaagggatgaagagat
ggcttagcagttaaaagcatgactgctcttcagaggtgtgagttcaatcc
cagcaccacatgggtgctcacaaccatcagtaaaggatcaatgtcctctt
ctggtatgttgaagaaggctacgtgtacttctaataataaaataaagtag
aag
gaattcaaaggtaaaaagacagtccgatgggaacttccggggggcggggc
aggtctgcaacacagccttagaactggatcgctgttctccctcacaggac
agcctgtgagcctgggaggagataacactgtcttcctgtttgtctggggt
tgagaactggaggctgtgactgatgtgagtgagagtgaggtatgagtgag
tgagcaagcgagtgggcaaatggaagagatgagaggcacggggtcttccc
tacaaaatgagttccaggacagccagggctatacagagaaaccctgcctt
gaaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaacctga
ttctgagtttggtttactggttagttgacctctgatttcttcatcccttt
cgccttctctttcccttaataattttccaatttgtcttttaaacaaatcc
gctctcttgaattcaacctgcatctctataaaaccggagtaaaaataccc
aaatgcccagggctctgaatggggaaggtaggctgacggatctcaggggt
aaggaatgaggcagggtttatggggaatgaatgtggggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28259242_28260358
seq2: B6Ng01-061I03.b_47_1149 (reverse)

seq1  CTTCTACTTTAATTTTATTTATTAAAGAGTACACTGTAGCTGTCTTCAGA  50
      |||||||||| |||||| |||||| | ||||||| |||||  |||||| |
seq2  CTTCTACTTT-ATTTTA-TTATTAGA-AGTACAC-GTAGCCTTCTTCA-A  45

seq1  CATACCAGAAGAGGGCATTGGATCACTTTACTGATGGTTGTGAGCCACCA  100
      |||||||||||||| |||| |||| ||||||||||||||||||||  |||
seq2  CATACCAGAAGAGGACATT-GATC-CTTTACTGATGGTTGTGAGCACCCA  93

seq1  TGTGGTTGCTGGGAATTGAACTCACAACCTCTGGAAGAGCAGTCAATGCT  150
      ||||| ||||||| ||||||||||| |||||| ||||||||||| |||||
seq2  TGTGG-TGCTGGG-ATTGAACTCAC-ACCTCT-GAAGAGCAGTC-ATGCT  138

seq1  CTTAACTGCTAAGCCATCTCTTCATCCCTTCTTTGTTCTTCCTTAGAGAT  200
       |||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TTTAACTGCTAAGCCATCTCTTCATCCCTTC-TTGTTCTT-CTTAGAGAT  186

seq1  TGAATTCCTTGAATTCAGGAACTGACATTGAATGCTTTCTGTATTCCATT  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAATTCCTTGAATTCAGGAACTGACATTGAATGCTTTCTGTATCCCATT  236

seq1  CTCAATACATTAGCACCGAGTGAGGTGTGACACTCCCTTAAGTGAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACATTAGCACCGAGTGAGGTGTGACACTCCCTTAAGTGAACCAA  286

seq1  TGGCTTTCAATTTTATTTTTGTTTTAATTTAATTATAATTTTATTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCAATTTTATTTTTGTTTTAATTTAATTATAATTTTATTTTGTA  336

seq1  AAATATGTAACATACTATATCAGCCATTTTAAGTGTACAGTTCATTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAACATACTATATCAGCCATTTTAAGTGTACAGTTCATTATAG  386

seq1  GCATATTTATAACATATACAGAAAATTTTCATAATTTCTTTCATTACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTATAACATATACAGAAAATTTTCATAATTTCTTTCATTACTAA  436

seq1  ATAATAAAACTATGATGTGACAGCTCCTCTTTCCCACCTCCCAGCCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAACTATGATGTGACAGCTCCTCTTTCCCACCTCCCAGCCCCCA  486

seq1  GCAGCCACTATTCTAATTTTCTAGCAACTTAATAGCTAACTCATGTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACTATTCTAATTTTCTAGCAACTTAATAGCTAACTCATGTAAAT  536

seq1  AAAATCATACAGTGTTCTTCTGTGGCTGTAACATCTTCAGGTTCATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATACAGTGTTCTTCTGTGGCTGTAACATCTTCAGGTTCATGTGT  586

seq1  GATGTGGTGTGGAGTTCCTTCTTTACGTGACTATGTAATGCTCCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTGTGGAGTTCCTTCTTTACGTGACTATGTAATGCTCCACTGTG  636

seq1  TAAAAGGGCTGTGTTTTGCTTCTTCGTTCATCTGCGGCAGGGCATCTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGCTGTGTTTTGCTTCTTCGTTCATCTGCGGCAGGGCATCTCGA  686

seq1  CATCTCGGCATCTAGGCTGCTCCCTGCTATCTTCTGTGAGCAGTAGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGGCATCTAGGCTGCTCCCTGCTATCTTCTGTGAGCAGTAGGGTA  736

seq1  TGAATATTACATATTATTGTTCAAACATCCCTTTGAGACTGGGAGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTACATATTATTGTTCAAACATCCCTTTGAGACTGGGAGTGTTG  786

seq1  CATCATATGGAATACTTTTTAAGTCTTTAAGACAATGTCTCACTCTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATGGAATACTTTTTAAGTCTTTAAGACAATGTCTCACTCTGTTT  836

seq1  GTTATACACGTTGGCCTGGAATTTGCCATTTAGTCTTGAAGCTGAAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACACGTTGGCCTGGAATTTGCCATTTAGTCTTGAAGCTGAAATCC  886

seq1  TTCGGTATTTTCCAGGTGCTGGAATGGGCCTTTGCCCATGCACCTGGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTATTTTCCAGGTGCTGGAATGGGCCTTTGCCCATGCACCTGGCCT  936

seq1  GATTGCTTCATTTTTAATTTTTTAGAACTGCCAGCTGTATTCCACAGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTCATTTTTAATTTTTTAGAACTGCCAGCTGTATTCCACAGTGG  986

seq1  TTGGATAATGGAATTTTAATTATTCACCTCATATATGCTACCATTTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAATGGAATTTTAATTATTCACCTCATATATGCTACCATTTGGAA  1036

seq1  TATAGAACTCTTGTAATTATTATACGAAGCAGAAAGCTGGGGCATGGCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACTCTTGTAATTATTATACGAAGCAGAAAGCTGGGGCATGGCTC  1086

seq1  CAGATTTAGCAGAATTC  1117
      |||||||||||||||||
seq2  CAGATTTAGCAGAATTC  1103

seq1: chr15_28174177_28174767
seq2: B6Ng01-061I03.g_69_659

seq1  GAATTCAAAGGTAAAAAGACAGTCCGATGGGAACTTCCGGGGGGCGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTAAAAAGACAGTCCGATGGGAACTTCCGGGGGGCGGGGC  50

seq1  AGGTCTGCAACACAGCCTTAGAACTGGATCGCTGTTCTCCCTCACAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCAACACAGCCTTAGAACTGGATCGCTGTTCTCCCTCACAGGAC  100

seq1  AGCCTGTGAGCCTGGGAGGAGATAACACTGTCTTCCTGTTTGTCTGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGAGCCTGGGAGGAGATAACACTGTCTTCCTGTTTGTCTGGGGT  150

seq1  TGAGAACTGGAGGCTGTGACTGATGTGAGTGAGAGTGAGGTATGAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTGGAGGCTGTGACTGATGTGAGTGAGAGTGAGGTATGAGTGAG  200

seq1  TGAGCAAGCGAGTGGGCAAATGGAAGAGATGAGAGGCACGGGGTCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCGAGTGGGCAAATGGAAGAGATGAGAGGCACGGGGTCTTCCC  250

seq1  TACAAAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGCCTT  300

seq1  GAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAACCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAACCTGA  350

seq1  TTCTGAGTTTGGTTTACTGGTTAGTTGACCTCTGATTTCTTCATCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGGTTTACTGGTTAGTTGACCTCTGATTTCTTCATCCCTTT  400

seq1  CGCCTTCTCTTTCCCTTAATAATTTTCCAATTTGTCTTTTAAACAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCTCTTTCCCTTAATAATTTTCCAATTTGTCTTTTAAACAAATCC  450

seq1  GCTCTCTTGAATTCAACCTGCATCTCTATAAAACCGGAGTAAAAATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGAATTCAACCTGCATCTCTATAAAACCGGAGTAAAAATACCC  500

seq1  AAATGCCCAGGGCTCTGAATGGGGAAGGTAGGCTGACGGATCTCAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCAGGGCTCTGAATGGGGAAGGTAGGCTGACGGATCTCAGGGGT  550

seq1  AAGGAATGAGGCAGGGTTTATGGGGAATGAATGTGGGGTTT  591
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAGGCAGGGTTTATGGGGAATGAATGTGGGGTTT  591