BAC Information

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BAC

Clone NameB6Ng01-061N15
Chromosome4 (Build37)15 (Build37)
Map Location 135,856,444 - 135,856,67457,019,350 - 57,019,900
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSrrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46
Downstream geneHnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061N15.bB6Ng01-061N15.g
ACCDH882420DH882421
length525543
definitionDH882420|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N15, 5' end.DH882421|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,856,444 - 135,856,674)(57,019,350 - 57,019,900)
sequence
tacatcttgttctaaaggcagcagaactatattgccatactatgcataat
ttgagcatatatgagactttaaagcccacctacacagtaatgcactttct
caaacaagaccacttttcctcaaacaagatcacacctccaaatagtgata
ctcctgagtaagaattttgacttctttaaaaacacagaaatattatagga
atgtgtttttgtttaaatttcaggtatgggatatggagctgattcagatt
gtctatagcagctgactattattagccatgtgctctagcagggatataat
tttgccagctgcagatagtttctgcaagtgtgtgacatttggaatgttgg
gagcttttcagagagtatagaaatgtgagatccccaatagtgggaaagtt
gatatgtggttggttggttacagtgtgttaaatacttgtgtacaaagaac
aacacaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaggaggaggaggaggaggagga
gaattctgttctttatgtgacacatgtttataggcagcaacctggaaaaa
acagtctgggttgggtctcaacagctgccatctgctgattcctggcattt
cctaggaagtcccatgggagtggagtaatgggtgaatgtttctggtgtta
gtgaacgggggaacaaaacagagaatgatgtcaggcttgtaaaagcctca
gtcactggagtgggagtcactaacataggaattgaactgcactgttagaa
gaaagagaatatagccattcactgggcttacactgtgcaaagaacattgt
ccctgccccctctttgttatgtctgtggtgacagtgacctcagtgtttgg
ccttgatgccatgacaacagcatctgggtgctctcagcaggaagtattgc
ctaaatgtgagctgatagcaaaagaagaattgggaactcagagataaatc
ctgtctggtttgtaatggagtaatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135856444_135856674
seq2: B6Ng01-061N15.b_540_579 (reverse)

seq1  TCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTGTCTCCTGAATGCTGGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAATGTGTTCTTAATTAGTGCTCTATGGGGGCTGGTGAGATGGCTCAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCAGGAGTTCAAATCCCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCAACCACATGGTGGCTTACAACCATCCGTATCGAGATCTGACCCCTTCC  200
                                                || | |||
seq2  -----------------------------------------TCCTCCTCC  9

seq1  TCCTCCTCCTCCTCTTCTTCTTCTTCTTCTT  231
      |||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCTTCTTCTTCTTCTTCTT  40

seq1: chr15_57019350_57019900
seq2: B6Ng01-061N15.g_67_609 (reverse)

seq1  TATATATATATACATATGTGTATATATATATATATATATATATATATATA  50
      ||||||||||||        ||||||||||||||||||||||||||||||
seq2  TATATATATATA--------TATATATATATATATATATATATATATATA  42

seq1  TATATATATATATATATATATATATATATTACTCCATTACAAACCAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATTACTCCATTACAAACCAGACA  92

seq1  GGATTTATCTCTGAGTTCCCAATTCTTCTTTTGCTATCAGCTCACATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATCTCTGAGTTCCCAATTCTTCTTTTGCTATCAGCTCACATTTA  142

seq1  GGCAATACTTCCTGCTGAGAGCACCCAGATGCTGTTGTCATGGCATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACTTCCTGCTGAGAGCACCCAGATGCTGTTGTCATGGCATCAAG  192

seq1  GCCAAACACTGAGGTCACTGTCACCACAGACATAACAAAGAGGGGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACTGAGGTCACTGTCACCACAGACATAACAAAGAGGGGGCAGG  242

seq1  GACAATGTTCTTTGCACAGTGTAAGCCCAGTGAATGGCTATATTCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTCTTTGCACAGTGTAAGCCCAGTGAATGGCTATATTCTCTTT  292

seq1  CTTCTAACAGTGCAGTTCAATTCCTATGTTAGTGACTCCCACTCCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACAGTGCAGTTCAATTCCTATGTTAGTGACTCCCACTCCAGTGA  342

seq1  CTGAGGCTTTTACAAGCCTGACATCATTCTCTGTTTTGTTCCCCCGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTTTTACAAGCCTGACATCATTCTCTGTTTTGTTCCCCCGTTCA  392

seq1  CTAACACCAGAAACATTCACCCATTACTCCACTCCCATGGGACTTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCAGAAACATTCACCCATTACTCCACTCCCATGGGACTTCCTAG  442

seq1  GAAATGCCAGGAATCAGCAGATGGCAGCTGTTGAGACCCAACCCAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCAGGAATCAGCAGATGGCAGCTGTTGAGACCCAACCCAGACTG  492

seq1  TTTTTTCCAGGTTGCTGCCTATAAACATGTGTCACATAAAGAACAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAGGTTGCTGCCTATAAACATGTGTCACATAAAGAACAGAATT  542

seq1  C  551
      |
seq2  C  543