BAC Information

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BAC

Clone NameB6Ng01-062C14
Chromosome15 (Build37)
Map Location 97,417,999 - 97,549,637
singlet/doubletdoublet
Overlap geneD15Ertd682e, Pp11r
Upstream geneSlc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774
Downstream geneRapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C14.bB6Ng01-062C14.g
ACCDH882642DH882643
length1,131537
definitionDH882642|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C14, 5' end.DH882643|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,417,999 - 97,419,145)(97,549,095 - 97,549,637)
sequence
gaattcttcttcagtgaattctttcttacactcccaccctgctgagcctt
ccctgagcgatttcatttctaggaaacaaaggcaactgcatattttaaat
gatcactgtgtttttagagacttcccttcttagccaggaggtgtcctctg
gcaaatgagccaaccccccccccacccccctttctggttcaagtaaaata
tgtgactctcctagggaaggcagcttagcatctggcagcagattgctgca
tgtgagcaccaacaaacagaaacaatcactgggtaagtcagcagccccgc
cctcctctccgtgtcttaatatttgctttccaaaaaaacaaaaaacaaaa
aacaaaaaacaacaacaacaacaaaaaaaacagtagaggctctggagagc
taacttatcttagcttctgttaaacggtgtgcttttgccaagcccccatg
cagctgctgagcttgtgggtaaactcaagacctaatatctgtctgtggtc
ccagctgcctggaatacagacttcagttggctataactgtctgagaggtc
atctctggtaggttccccctaccactcaccgtctctccctccaactaaaa
tttcatttcacagtgacatgaaaatcctacttccagagaaacttttcttt
ataatcctttttttttttttcctgcaaggtgtggcagccgtgttcataaa
taccttaattagaatcaaagattccaggttacatgatcctttcaaactag
cctaaccagacagaataagttggaataattggcccaacttacataaacat
ggatattttatcccaacacgccaggacctgaggctgaaggattaagagcc
ccagtctagcctgggctacatagaaagattcttttctcaaatacaaacac
agacaaagcaagacggcagcaaaaagtccacggaagggtaatcctacgtg
gagtgtgagagtttgaagggtgtaagctggtcaaagcagcgactagctgg
caaagcttttaaatgcagtgggcctctgactagtgatataagattctcat
gagaagctcttgacatgtgggtaaagccttaactggggaatgctcagcat
gcagcaaaggatcccacctcgatgttcagta
cagaccagcctggtctacgaagtaaattccaggacaaccagggctacata
gaaaaaccctaactcaaaaccccaaaccaaactaaaccacaaaaacaaca
cccaactccccaaaacacctcaagttgcccctagctcctgaagccatctc
tgtgtcctgcccctggtctttctggaagattggaggagagtttcaagtgc
acattcaggtctttcaatgggtctccatccacttacccaggctcttcact
tacgtcaacgagaagctgttctccaagcctacctatgcagcctttatcaa
cttactcaacaattaccagcgggccacaggccacggggagcatttcagtg
cccagcaactggaggagcagggtgtcttcctcagggaggtcatgaagacg
gctgtcatgaaggaactctatagctttctccatcaccaaagtgagtgagt
cttctctgctgctcaaagctgtggggtaaggtgtctccaggagaaacaga
cgccgctgaggtctctgtgggagtgggggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97417999_97419145
seq2: B6Ng01-062C14.b_48_1178

seq1  GAATTCTTCTTCAGTGAATTCTTTCTTACACTCCCACCCTGCTGAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCAGTGAATTCTTTCTTACACTCCCACCCTGCTGAGCCTT  50

seq1  CCCTGAGCGATTTCATTTCTAGGAAACAAAGGCAACTGCATATTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCGATTTCATTTCTAGGAAACAAAGGCAACTGCATATTTTAAAT  100

seq1  GATCACTGTGTTTTTAGAGACTTCCCTTCTTAGCCAGGAGGTGTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGTGTTTTTAGAGACTTCCCTTCTTAGCCAGGAGGTGTCCTCTG  150

seq1  GCAAATGAGCCAACCCCCCCCCCACCCCCCTTTCTGGTTCAAGTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAGCCAACCCCCCCCCCACCCCCCTTTCTGGTTCAAGTAAAATA  200

seq1  TGTGACTCTCCTAGGGAAGGCAGCTTAGCATCTGGCAGCAGATTGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTCCTAGGGAAGGCAGCTTAGCATCTGGCAGCAGATTGCTGCA  250

seq1  TGTGAGCACCAACAAACAGAAACAATCACTGGGTAAGTCAGCAGCCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCACCAACAAACAGAAACAATCACTGGGTAAGTCAGCAGCCCCGC  300

seq1  CCTCCTCTCCGTGTCTTAATATTTGCTTTCCAAAAAAACAAAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCCGTGTCTTAATATTTGCTTTCCAAAAAAACAAAAAACAAAA  350

seq1  AACAAAAAACAACAACAACAACAAAAAAAACAGTAGAGGCTCTGGAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAACAACAACAACAAAAAAAACAGTAGAGGCTCTGGAGAGC  400

seq1  TAACTTATCTTAGCTTCTGTTAAACGGTGTGCTTTTGCCAAGCCCCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATCTTAGCTTCTGTTAAACGGTGTGCTTTTGCCAAGCCCCCATG  450

seq1  CAGCTGCTGAGCTTGTGGGTAAACTCAAGACCTAATATCTGTCTGTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGAGCTTGTGGGTAAACTCAAGACCTAATATCTGTCTGTGGTC  500

seq1  CCAGCTGCCTGGAATACAGACTTCAGTTGGCTATAACTGTCTGAGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCTGGAATACAGACTTCAGTTGGCTATAACTGTCTGAGAGGTC  550

seq1  ATCTCTGGTAGGTTCCCCCTACCACTCACCGTCTCTCCCTCCAACTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGTAGGTTCCCCCTACCACTCACCGTCTCTCCCTCCAACTAAAA  600

seq1  TTTCATTTCACAGTGACATGAAAATCCTACTTCCAGAGAAACTTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCACAGTGACATGAAAATCCTACTTCCAGAGAAACTTTTCTTT  650

seq1  ATAATCCTTTTTTTTTTTTTCCTGCAAGGTGTGGCAGCCGTGTTCATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTTTTTTTTTTTTCCTGCAAGGTGTGGCAGCCGTGTTCATAAA  700

seq1  TACCTTAATTAGAATCAAAGATTCCAGGTTACATGATCCTTTCAAACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAATTAGAATCAAAGATTCCAGGTTACATGATCCTTTCAAACTAG  750

seq1  CCTAACCAGACAGAATAAGTTGGAATAATTGGCCCAACTTACATAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCAGACAGAATAAGTTGGAATAATTGGCCCAACTTACATAAACAT  800

seq1  GGATATTTTATCCCAACACGCCAGGACCTGAGGCTGAAGGATTAAGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTATCCCAACACGCCAGGACCTGAGGCTGAAGGATTAAGAGCC  850

seq1  CCAGTCTAGCCTGGGCTACATAGAAAGATTC-TTTCTCAAATACAAAACA  899
      ||||||||||||||||||||||||||||||| |||||||||||||||   
seq2  CCAGTCTAGCCTGGGCTACATAGAAAGATTCTTTTCTCAAATACAAA--C  898

seq1  ACAGAC-AAGCAAGACGGCAGGAAAAAGTCCACGGAAGGGTAATCCTACG  948
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGACAAAGCAAGACGGCAGCAAAAAGTCCACGGAAGGGTAATCCTACG  948

seq1  TGGAGTGTTGAGAGTTTGAAGGGTGTAAGCTGGTCAAAGCAAGCGACTTA  998
      ||||||| |||||||||||||||||||||||||||||||| |||||| ||
seq2  TGGAGTG-TGAGAGTTTGAAGGGTGTAAGCTGGTCAAAGC-AGCGAC-TA  995

seq1  GCTGGCAAAAGCCTTTTAAATGCAGTGTGCCTTCTGACTTAGTGAATATT  1048
      |||||||||   ||||||||||||||| ||| |||||| ||||| |||| 
seq2  GCTGGCAAA--GCTTTTAAATGCAGTGGGCC-TCTGAC-TAGTG-ATATA  1040

seq1  AGAATTTCTCATGAGAAAGCTCTTGACAATGTGGGTAAGAGCCTTAACTG  1098
      |||  |||||||||| ||||||||||| |||||||||| |||||||||||
seq2  AGA--TTCTCATGAG-AAGCTCTTGAC-ATGTGGGTAA-AGCCTTAACTG  1085

seq1  TGAAAATGCTCAGCATTGCAGCAAAAAGATCCCACCTCGATGTCCAGTA  1147
       |  ||||||||||| |||||| ||| |||||||||||||||| |||||
seq2  -GGGAATGCTCAGCA-TGCAGC-AAAGGATCCCACCTCGATGTTCAGTA  1131

seq1: chr15_97549095_97549637
seq2: B6Ng01-062C14.g_70_612 (reverse)

seq1  CCACCCCACCCCCACTCCCACAGAGACCTCAGCGGCGTCTGTTTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCCACTCCCACAGAGACCTCAGCGGCGTCTGTTTCTCCTG  50

seq1  GAGACACCTTACCCCACAGCTTTGAGCAGCAGAGAAGACTCACTCACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCTTACCCCACAGCTTTGAGCAGCAGAGAAGACTCACTCACTTT  100

seq1  GGTGATGGAGAAAGCTATAGAGTTCCTTCATGACAGCCGTCTTCATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGAGAAAGCTATAGAGTTCCTTCATGACAGCCGTCTTCATGACC  150

seq1  TCCCTGAGGAAGACACCCTGCTCCTCCAGTTGCTGGGCACTGAAATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGGAAGACACCCTGCTCCTCCAGTTGCTGGGCACTGAAATGCTC  200

seq1  CCCGTGGCCTGTGGCCCGCTGGTAATTGTTGAGTAAGTTGATAAAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGGCCTGTGGCCCGCTGGTAATTGTTGAGTAAGTTGATAAAGGCTG  250

seq1  CATAGGTAGGCTTGGAGAACAGCTTCTCGTTGACGTAAGTGAAGAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAGGCTTGGAGAACAGCTTCTCGTTGACGTAAGTGAAGAGCCTG  300

seq1  GGTAAGTGGATGGAGACCCATTGAAAGACCTGAATGTGCACTTGAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGGATGGAGACCCATTGAAAGACCTGAATGTGCACTTGAAACTC  350

seq1  TCCTCCAATCTTCCAGAAAGACCAGGGGCAGGACACAGAGATGGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAATCTTCCAGAAAGACCAGGGGCAGGACACAGAGATGGCTTCAG  400

seq1  GAGCTAGGGGCAACTTGAGGTGTTTTGGGGAGTTGGGTGTTGTTTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGGGCAACTTGAGGTGTTTTGGGGAGTTGGGTGTTGTTTTTGTG  450

seq1  GTTTAGTTTGGTTTGGGGTTTTGAGTTAGGGTTTTTCTATGTAGCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTGGTTTGGGGTTTTGAGTTAGGGTTTTTCTATGTAGCCCTGG  500

seq1  TTGTCCTGGAATTTACTTCGTAGACCAGGCTGGTCTGGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGAATTTACTTCGTAGACCAGGCTGGTCTGGAATTC  543