BAC Information

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BAC

Clone NameB6Ng01-062F09
Chromosome15 (Build37)
Map Location 54,187,331 - 54,355,261
singlet/doubletdoublet
Overlap geneColec10
Upstream geneSamd12, EG665097, EG621631, Tnfrsf11b, LOC665280, EG383032
Downstream geneMal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F09.bB6Ng01-062F09.g
ACCDH882765DH882766
length1,0951,064
definitionDH882765|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F09, 5' end.DH882766|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,187,331 - 54,188,043)(54,354,182 - 54,355,261)
sequence
gaattcatgaaattcttaggcaaatggatagaactagaaaatatcatctt
gagtgaggtaacccaatctcaaaagaatacacatgatatgtattagctga
taaatggatattagcccaaaacctccaaataaccaggatacaattcacag
accatatgaagttcaagaaggaagatcaaagtgtgggtgctttggtcctt
ctcataaggagaacaaaatactcacagaagcaaatatggagataaagtgt
ggagcagagactgatggaaaggccacacggagactgtcccacctggggat
ccatcccatatacagttaccaaacccagacattcttgtgtggataccaag
aagtacatgctgaaaggagactgatatgtctgtctcctgagaggtcctga
atgagccttagaaatacataggcagatgtttgcagccaaccatcggactg
agtgcggggtccccaatagagaagttagagaaaggactgaaggggttgaa
gggatttgtaacctcataggaagaacaacaatatcaaccaaccagacccc
cccagaactcccagggactagccatcaacaaaggagtacacatagctcca
gctgcatatttagcagaggatggccttgtcatgcaccaatgggaggagac
atctttggtcctatgccccagtgtaggggaatcaagggcagggaagtggg
agtggatgtgtaggtggaggaacaccatcatagaagcaggaggagggaag
atgtgataggatgtttccaggagggagggaaaccgggaaggggataacat
tttgaaatgtaaataaagaaaatatccaataaaacatttaaaaataacta
aataaataaaatatctataataataaagaaaaaaagaatttgattgacat
aagactttcttatcataagaattcttttaccacattccactaaactggat
acgtttgtggtctttgaacctttaaagcagaaagttaccagaaataaaaa
ctcctcagtaaagagatgtgtaatcaagatccaagtgtggaaatttaatt
gtcaagttcttctttatggcattgattgggtatcgatgcattaaa
gaattcaacagccatgcctggaatataaataatgtcagagttatgaacat
aggaagagaaatacagatcttacatcagaaaatgcttggctagaattagc
caatctcccctgttaaggtccctactggcagatgctatttttagttgtca
ttttactgaccaggaaatcaagaaagagagagagagggggagaaggatcc
agtagcttggttaagcttcttgatggcctcgggattcagatttgagctta
gcaatgtgattctgaatgttaaccaagccccccccccattattaccttgg
agaaacaacagtcctgatggaagcatagtagcacaggttgaattagaagg
tacttgtgatgcctgtctttgttgggctcaagatttctgaggcatagcat
ggtaggcagttaatatgtcaaaatacataacgattttgtggaaaaacatt
tctgctgataacctttgctaaaaaaaaaaaagcagtaaaatacatttctt
acaaaagttcttgccagagcgcaggggtttttatgagtcctgtaaatttg
accagtttgcgaaggtcatagaatacagcaagccaagggaacaggttcag
tgaaaatgaaatgacaagattgctccgaggtgaggaacactcattgctct
tcccgaggactcagagtgttttccccacatctaagtggtggttgacaatt
cttccaaactccagttccatctaaagccattttccgatgttcccaggcac
tagacacatatgtggtgcacatacttacatgaagtccaaacatacacata
aataaatctaaaaatataacactgatcaatacatttaaaatgccaatagt
ctattaaatgcactcagtatattaaatgttgttatatgtgcctctaagaa
tttgacactatagacatttcatgcaactatcattaaataagtcacatatt
tgagtgtaatatgagaggcagctatgatataaggtggtggggtgtagagg
gtcttgtacttggatgcatattgaggttgagaatattatatggaggtgga
gactcatctttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_54187331_54188043
seq2: B6Ng01-062F09.b_433_1142

seq1  CCTGAGAGGTCCTGAATGAGCCTTAGAAATACATAGGCAGATGTTTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGGTCCTGAATGAGCCTTAGAAATACATAGGCAGATGTTTGCAG  50

seq1  CCAACCATCGGACTGAGTGCGGGGTCCCCAATAGAGAAGTTAGAGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATCGGACTGAGTGCGGGGTCCCCAATAGAGAAGTTAGAGAAAGG  100

seq1  ACTGAAGGGGTTGAAGGGATTTGTAACCTCATAGGAAGAACAACAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGGTTGAAGGGATTTGTAACCTCATAGGAAGAACAACAATATC  150

seq1  AACCAACCAGACCCCCCCAGAACTCCCAGGGACTAGCCATCAACAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAGACCCCCCCAGAACTCCCAGGGACTAGCCATCAACAAAGGA  200

seq1  GTACACATAGCTCCAGCTGCATATTTAGCAGAGGATGGCCTTGTCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATAGCTCCAGCTGCATATTTAGCAGAGGATGGCCTTGTCATGCA  250

seq1  CCAATGGGAGGAGACATCTTTGGTCCTATGCCCCAGTGTAGGGGAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGAGGAGACATCTTTGGTCCTATGCCCCAGTGTAGGGGAATCAA  300

seq1  GGGCAGGGAAGTGGGAGTGGATGTGTAGGTGGAGGAACACCATCATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGAAGTGGGAGTGGATGTGTAGGTGGAGGAACACCATCATAGAA  350

seq1  GCAGGAGGAGGGAAGATGTGATAGGATGTTTCCAGGAGGGAGGGAAACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAGGGAAGATGTGATAGGATGTTTCCAGGAGGGAGGGAAACCG  400

seq1  GGAAAGGGGATAACA-TTTGAAATGTAAATAAAGAAAATATCCAATAAAA  449
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GG-AAGGGGATAACATTTTGAAATGTAAATAAAGAAAATATCCAATAAAA  449

seq1  ACATTAAAAATAACTAAATAAATAAAATATCTATAATAATAAAGAAAAAA  499
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAATAACTAAATAAATAAAATATCTATAATAATAAAGAAAAAA  499

seq1  AGAATTTGATTGACATAAGACTTTCTTTATCATAAGAATTCTTTTACCAC  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAATTTGATTGACATAAGACTTTC-TTATCATAAGAATTCTTTTACCAC  548

seq1  ATTCCACTAAACTGGATACGTCTGT-GTCTTTGAACCTTAAAAACAGAAA  598
      ||||||||||||||||||||| ||| ||||||||||||| ||| ||||||
seq2  ATTCCACTAAACTGGATACGTTTGTGGTCTTTGAACCTTTAAAGCAGAAA  598

seq1  GTTACCAGAAATAAAAACACCACAGT-AAGAGATGTGTAATCAAGATCCA  647
      |||||||||||||||||| || |||| |||||||||||||||||||||| 
seq2  GTTACCAGAAATAAAAACTCCTCAGTAAAGAGATGTGTAATCAAGATCC-  647

seq1  AAGAGTAGAAAATTAATTGTACAAAGCTC-TCCTTATGGCAATGATTTTG  696
      ||| || |||| ||||||||   ||| || || |||||||| |||  |||
seq2  AAGTGTGGAAATTTAATTGT--CAAGTTCTTCTTTATGGCATTGA--TTG  693

seq1  GTTACCGATGCATTAAA  713
      | || ||||||||||||
seq2  GGTATCGATGCATTAAA  710

seq1: chr15_54354182_54355261
seq2: B6Ng01-062F09.g_71_1134 (reverse)

seq1  CTGAAATGACTGAGTCATCAACCTCCATTATAAATTATTCTCAACCCTCT  50
      |||||| || |||||| || ||||||| |||||  ||||||||| |||| 
seq2  CTGAAA-GA-TGAGTC-TCCACCTCCA-TATAA--TATTCTCAA-CCTCA  43

seq1  ATTACTGCATCCAAGTTACAAGACCCTTCTACA-CCCACCACCTTTATAA  99
      ||   |||||||||| |||||||||| |||||| ||||||||| ||||| 
seq2  AT--ATGCATCCAAG-TACAAGACCC-TCTACACCCCACCACC-TTATA-  87

seq1  TTCAATAGCTGCCTCTCATATTTACACTCAAATATGTGACTTATTTAATG  149
       || |||||||||||||||| |||||||||||||||||||||||||||||
seq2  -TC-ATAGCTGCCTCTCATA-TTACACTCAAATATGTGACTTATTTAATG  134

seq1  ATAGTTGCATGAAATTGTCTATAGTGTCAAATTCTTAGAGGCACATATAA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCATGAAA-TGTCTATAGTGTCAAATTCTTAGAGGCACATATAA  183

seq1  CAACATTTAATATACTGAGTGCATTTAATAGACTATTGGCATTTTAAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAATATACTGAGTGCATTTAATAGACTATTGGCATTTTAAATG  233

seq1  TATTGATCAGTGTTATATTTTTAGATTTATTTATGTGTATGTTTGGACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCAGTGTTATATTTTTAGATTTATTTATGTGTATGTTTGGACTT  283

seq1  CATGTAAGTATGTGCACCACATATGTGTCTAGTGCCTGGGAACATCGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGTATGTGCACCACATATGTGTCTAGTGCCTGGGAACATCGGAA  333

seq1  AATGGCTTTAGATGGAACTGGAGTTTGGAAGAATTGTCAACCACCACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTAGATGGAACTGGAGTTTGGAAGAATTGTCAACCACCACTTA  383

seq1  GATGTGGGGAAAACACTCTGAGTCCTCGGGAAGAGCAATGAGTGTTCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGGAAAACACTCTGAGTCCTCGGGAAGAGCAATGAGTGTTCCTC  433

seq1  ACCTCGGAGCAATCTTGTCATTTCATTTTCACTGAACCTGTTCCCTTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGAGCAATCTTGTCATTTCATTTTCACTGAACCTGTTCCCTTGGC  483

seq1  TTGCTGTATTCTATGACCTTCGCAAACTGGTCAAATTTACAGGACTCATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATTCTATGACCTTCGCAAACTGGTCAAATTTACAGGACTCATA  533

seq1  AAAACCCCTGCGCTCTGGCAAGAACTTTTGTAAGAAATGTATTTTACTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCTGCGCTCTGGCAAGAACTTTTGTAAGAAATGTATTTTACTGC  583

seq1  TTTTTTTTTTTTAGCAAAGGTTATCAGCAGAAATGTTTTTCCACAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAGCAAAGGTTATCAGCAGAAATGTTTTTCCACAAAATC  633

seq1  GTTATGTATTTTGACATATTAACTGCCTACCATGCTATGCCTCAGAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTATTTTGACATATTAACTGCCTACCATGCTATGCCTCAGAAATC  683

seq1  TTGAGCCCAACAAAGACAGGCATCACAAGTACCTTCTAATTCAACCTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCAACAAAGACAGGCATCACAAGTACCTTCTAATTCAACCTGTG  733

seq1  CTACTATGCTTCCATCAGGACTGTTGTTTCTCCAAGGTAATAATGGGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATGCTTCCATCAGGACTGTTGTTTCTCCAAGGTAATAATGGGGGG  783

seq1  GGGGCTTGGTTAACATTCAGAATCACATTGCTAAGCTCAAATCTGAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGGTTAACATTCAGAATCACATTGCTAAGCTCAAATCTGAATCC  833

seq1  CGAGGCCATCAAGAAGCTTAACCAAGCTACTGGATCCTTCTCCCCCTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCATCAAGAAGCTTAACCAAGCTACTGGATCCTTCTCCCCCTCTC  883

seq1  TCTCTCTTTCTTGATTTCCTGGTCAGTAAAATGACAACTAAAAATAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTTGATTTCCTGGTCAGTAAAATGACAACTAAAAATAGCAT  933

seq1  CTGCCAGTAGGGACCTTAACAGGGGAGATTGGCTAATTCTAGCCAAGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTAGGGACCTTAACAGGGGAGATTGGCTAATTCTAGCCAAGCAT  983

seq1  TTTCTGATGTAAGATCTGTATTTCTCTTCCTATGTTCATAACTCTGACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGTAAGATCTGTATTTCTCTTCCTATGTTCATAACTCTGACAT  1033

seq1  TATTTATATTCCAGGCATGGCTGTTGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  TATTTATATTCCAGGCATGGCTGTTGAATTC  1064