BAC Information

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BAC

Clone NameB6Ng01-062I17
Chromosome5 (Build37)15 (Build37)
Map Location 22,925,666 - 22,926,79044,346,883 - 44,347,331
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik
Downstream geneBC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062I17.bB6Ng01-062I17.g
ACCDH882907DH882908
length1,116708
definitionDH882907|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I17, 5' end.DH882908|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,925,666 - 22,926,790)(44,346,883 - 44,347,331)
sequence
gaattccaggtcagtcaggactaacagtaagaaaagttaggggtggagct
ggcaaaggttttctgcctgattatagaaagagcagtgtgttgggttgttt
tgtttttactgattgtttcataaaaggggctgatgctttgtttaagttgt
aaaaataggagtggagaatagcttagtagttaaaagtgcttgctttttca
aaggcctgggaaataagtacacccccctacacagtctgtgttgcctctgt
acagttgtctccaaagatggctgcgtgagagaggagggaggaaagggtga
ttaaagagcctgtcttagggagaacattttagcaatggaaggcagtgtac
aaatttagcaagtgtaattttataagtactcagaagcagcaaatatgatc
tgttccaccatgtggtttcaggcctagtagatgtcacagagtgacactgc
catatatgaaagtattgctgttatgtttggagattatactactagatgta
gccagctagttttactgacatgacagtacatagtcacacacttttattcc
agtcctttatcctgaaatgcctgcctttttcctcaccccccccaccccga
ttttagcaaattacctcaacctaagcatcaagtcagtattatccaaagta
aaatttgaattttaagctgcatctctaagcacttgcaatacagatttccc
tatgaaaagaccccaattacaatagcccagtgcatgatacaaactgataa
agaggagcagctttgaacagtcactggctttagagagctgtgtattgaca
gtgctgggatgagcagctacacacagccacatcacagctgagatttaata
gtccccttcctgagaacggaaaaactgcacactttaaactcactgtacgg
agacttgtacacttctgaagattctatcgagaggggattcgctgcacaaa
tgatttaacagatttagagaagtgcctatctagtcagctcatatagcaga
tgtgcttcatagtggtcagtactggggctttagattaataagggctttgg
tcatagctgatgtagagcacttgtttagatatgcttcagtcatgggattt
gtcttgtttaaggaca
gaattctttgtttagctctgtaccccatttttaatagggttattttctgg
agtccatcttcttgaatttatatatatatatttatataatttatatattt
atatatataatatataattatatatcatatatatataaatttatatatga
atttatatatatatataattgaatataatatatattgaatactagtcccc
tatctgatttaggatcagtaaagatcctttcccaatctgttggtagcctt
ttggtctttttgtttgtttgtttttttgttttgttttgttttttgttttg
gttttggttttttgagacaggttttctctgtgtagccctggctgtcctgg
actcactctgtagacctggctttcctcaattcagaaattgcctgcctcta
cctcccaagagctgggattaaaggtgtgggccaccactgtcctgtggcct
ttttgtcttattggcactgtcttttgtcttacagaagctttgcaatttta
tgaggtcccatttgtcaattctcattcttacagcacaagccattgctggt
ttgttcaggaattttccctctatgcccttattttgaggctttcccccact
ttctcctctatcacttgcagtgtctctggttttatgtggagttccttggt
ccacatagacttgagctttgtacaagtagataagaatggatcaattcaca
ttcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_22925666_22926790
seq2: B6Ng01-062I17.b_40_1155 (reverse)

seq1  TGTCCTCTAAACAAGACAAA-CCCATGACCTGAAGCATA-CTAAACAAGT  48
      |||||| ||||||||||||| ||||||| |||||||||| ||||||||||
seq2  TGTCCT-TAAACAAGACAAATCCCATGA-CTGAAGCATATCTAAACAAGT  48

seq1  GCTCTACCATCAAGCTATGACCAAAGCCCTATATAATCTAAAAGCCCCAG  98
      |||||| |||| ||||||||||||||||||   |||||| ||||||||||
seq2  GCTCTA-CATC-AGCTATGACCAAAGCCCTTATTAATCT-AAAGCCCCAG  95

seq1  TAACTGACCACTTATGGAGCACATCTGCTAATATTGAGCTGACTAGATAG  148
      | ||||||||| |||| |||||||||||| ||| ||||||||||||||||
seq2  T-ACTGACCAC-TATGAAGCACATCTGCT-ATA-TGAGCTGACTAGATAG  141

seq1  GCACTTTCTCTAAATCTGTTAAATCATTTGTTGCAGCGAATCCCCTCTCG  198
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAC-TTCTCTAAATCTGTTAAATCATTTG-TGCAGCGAATCCCCTCTCG  189

seq1  ATAGAATCTTCAGAAGTGTACAAGTCTCCGTACAGTGAGTTTAAAGTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCTTCAGAAGTGTACAAGTCTCCGTACAGTGAGTTTAAAGTGTG  239

seq1  CAGTTTTTCCGTTCTCAGGAAGGGGACTATTAAATCTCAGCTGTGATGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTCCGTTCTCAGGAAGGGGACTATTAAATCTCAGCTGTGATGTG  289

seq1  GCTGTGTGTAGCTGCTCATCCCAGCACTGTCAATACACAGCTCTCTAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTAGCTGCTCATCCCAGCACTGTCAATACACAGCTCTCTAAAG  339

seq1  CCAGTGACTGTTCAAAGCTGCTCCTCTTTATCAGTTTGTATCATGCACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACTGTTCAAAGCTGCTCCTCTTTATCAGTTTGTATCATGCACTG  389

seq1  GGCTATTGTAATTGGGGTCTTTTCATAGGGAAATCTGTATTGCAAGTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGTAATTGGGGTCTTTTCATAGGGAAATCTGTATTGCAAGTGCT  439

seq1  TAGAGATGCAGCTTAAAATTCAAATTTTACTTTGGATAATACTGACTTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCAGCTTAAAATTCAAATTTTACTTTGGATAATACTGACTTGA  489

seq1  TGCTTAGGTTGAGGTAATTTGCTAAAATCGGGGTGGGGGGGGTGAGGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGTTGAGGTAATTTGCTAAAATCGGGGTGGGGGGGGTGAGGAAA  539

seq1  AAGGCAGGCATTTCAGGATAAAGGACTGGAATAAAAGTGTGTGACTATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGCATTTCAGGATAAAGGACTGGAATAAAAGTGTGTGACTATGT  589

seq1  ACTGTCATGTCAGTAAAACTAGCTGGCTACATCTAGTAGTATAATCTCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATGTCAGTAAAACTAGCTGGCTACATCTAGTAGTATAATCTCCA  639

seq1  AACATAACAGCAATACTTTCATATATGGCAGTGTCACTCTGTGACATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACAGCAATACTTTCATATATGGCAGTGTCACTCTGTGACATCTA  689

seq1  CTAGGCCTGAAACCACATGGTGGAACAGATCATATTTGCTGCTTCTGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTGAAACCACATGGTGGAACAGATCATATTTGCTGCTTCTGAGT  739

seq1  ACTTATAAAATTACACTTGCTAAATTTGTACACTGCCTTCCATTGCTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAAATTACACTTGCTAAATTTGTACACTGCCTTCCATTGCTAAA  789

seq1  ATGTTCTCCCTAAGACAGGCTCTTTAATCACCCTTTCCTCCCTCCTCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCCCTAAGACAGGCTCTTTAATCACCCTTTCCTCCCTCCTCTCT  839

seq1  CACGCAGCCATCTTTGGAGACAACTGTACAGAGGCAACACAGACTGTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCCATCTTTGGAGACAACTGTACAGAGGCAACACAGACTGTGTA  889

seq1  GGGGGGTGTACTTATTTCCCAGGCCTTTGAAAAAGCAAGCACTTTTAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGTACTTATTTCCCAGGCCTTTGAAAAAGCAAGCACTTTTAACT  939

seq1  ACTAAGCTATTCTCCACTCCTATTTTTACAACTTAAACAAAGCATCAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTATTCTCCACTCCTATTTTTACAACTTAAACAAAGCATCAGCC  989

seq1  CCTTTTATGAAACAATCAGTAAAAACAAAACAACCCAACACACTGCTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATGAAACAATCAGTAAAAACAAAACAACCCAACACACTGCTCTT  1039

seq1  TCTATAATCAGGCAGAAAACCTTTGCCAGCTCCACCCCTAACTTTTCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATCAGGCAGAAAACCTTTGCCAGCTCCACCCCTAACTTTTCTTA  1089

seq1  CTGTTAGTCCTGACTGACCTGGAATTC  1125
      |||||||||||||||||||||||||||
seq2  CTGTTAGTCCTGACTGACCTGGAATTC  1116

seq1: chr15_44346883_44347331
seq2: B6Ng01-062I17.g_322_503

seq1  CTTTTTTTTTGTTTGTTTTTTTGTTTTTTGTTTTTTCGAGACAGGGTTTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGCGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCATTCGCCACCACTGCCCAGCTCTAACTATCTTCTTAAGACTAACTAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACAACGCTTTCATGATTCAATTTATGTAAATCTCTATCCTACATTTACTA  250
                                               | |||    
seq2  -----------------------------------------CTTTT----  5

seq1  CAAGCTGGGTGACAGCAAGGATGACATTTGTTTTCTT-TTTTGTTTATGT  299
           ||  ||               |||||||| || ||||||||   |
seq2  -----TGTTTG---------------TTTGTTTTTTTGTTTTGTTTTGTT  35

seq1  TTTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTG  349
      ||||||||| ||||| |||||| |||||||| ||||||||||||||||||
seq2  TTTTGTTTTGGTTTTGGTTTTTTGAGACAGGTTTTCTCTGTGTAGCCCTG  85

seq1  GCTGTCCTGGAACTCACTATGTAGACCAGGCTGTTCTCGAATTCAGAAAT  399
      |||||||||| ||||||| |||||||| |||| | ||| |||||||||||
seq2  GCTGTCCTGG-ACTCACTCTGTAGACCTGGCTTTCCTC-AATTCAGAAAT  133

seq1  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCAC  449
       ||||||||||| |||||| || ||||||||||||||  || ||||||||
seq2  -TGCCTGCCTCTACCTCCCAAGAGCTGGGATTAAAGGTGTGGGCCACCAC  182