BAC Information

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BAC

Clone NameB6Ng01-062J04
Chromosome15 (Build37)11 (Build37)
Map Location 46,078,507 - 46,079,70793,922,290 - 93,922,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039389, EG432951
Downstream geneLOC100039438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062J04.bB6Ng01-062J04.g
ACCDH882927DH882928
length1,184863
definitionDH882927|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J04, 5' end.DH882928|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,078,507 - 46,079,707)(93,922,290 - 93,922,577)
sequence
gaattctcagcaactcctgtatcatgcctgcctggatgctgattcctgca
ttgatgataatggactgaacctctgaacctataagccagaccctaattaa
atgctgtccttgtaagagttgccttgttcatggtatcagttcacagcagt
aaaatcctaactaagacaacatcttttatattcttataaaattaacaaat
actaagaagttgacatcacaaaggaagtgtttgttataagatctttagaa
tttgcagaacaaaagatgtagagagtgtctggaatgaattggaggatggg
actatcataatatatcaaaatatattgtactgaaaaaattcttttaataa
cacaaaattatataacaaaacaatgagagacaagaaaattagtagggatc
caatacaaagtatttggaaataactgattcaaagtctcaagaataaaaat
taaacttacagattaaatatatgtagcaaagtttaagaaaagtagaaatt
ctgtgatttttgtttcatttttgaaagtgtgtctgtttcaggctgtatat
aagaaacatttcttcattgtatgagaatattaatagtaggaataataata
ccagaaaggtaagagcaatgaaatctaagctttaactaactttgtgtatt
aatatttaactggtttttaatataaaaccattaatctatttaatatattt
gagaatgactgaaaggcagagatcaatcatcaatcttgttgtctgagatt
aatcccgcaatcttttatattgtgaattgagtcaaatcagttttggtttg
gagatgtattaactttagaaaacaagtataaaagtttctttaaagctttg
gcagccttgtggtgatcagtagtcattgttaaagtaaataactgagagca
ataatttaaaaggagaggaatttttcttttgctgcctggtttcagagatg
tcagtccattttcagagagacttataaatttgagccctaattgaagcaga
aaaatggcatcagatattttgagggattcttcccttaaacttagtctaga
tgtagtagagtgagaaaagtgggacctcagagcagtatgtactcctagca
cacacctcagactcacatgaacagttagctcactttctgattctcaaact
cacaaaattattcaatctgtactagtcaagatct
gaattcaatacgtatacaattaaagtataaacataaagatactctagatt
tcttttgaaaagccttgatcttgaagattcataatagtagatagaatagg
tagaggtattttaaggtcattaatacagagctttaacagcattgttgaaa
tctagagcttattcgttttactattatttccacaagcatcaaagcatgga
gacagcaccagtaatttaaagaaaatgttctgtgggcttaaaattaaggc
catgcattacttacctcctgtaactatttaataaggagtatctatctact
ggcaaaattctgtacaccattattttcatagcatctccaaagccactaag
attatctttaacattaaaaaaataatcttccgtgtctttaaatctattca
tatttaaaaatcaattctagatattccagaaacaactaaggaatttatat
tttatattgtgttatctcagtgtaattaagaatcagaatatagcccaaaa
cttaggatacccaagatataagatacaatttgctaaacacatgaaactca
agaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggg
aacaaaacacccttggaaggagttacagagacaaagtgtggagctgagat
gaaaggatggaccatctagagactgccatatccagggatccaccccataa
tcagcatccaaacgctgacaccattgcatacactagcaagatttttatcg
aaggacccagatgtagctgtctctttgtgagactatgccggggcctagcc
aacacaaaagtggatgctcacagtcggctaatggaggatcacagggcttc
catagaggagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_46078507_46079707
seq2: B6Ng01-062J04.b_45_1228

seq1  GAATTCTCAGCAACTCCTGTATCATGCCTGCCTGGATGCTGATTCCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAACTCCTGTATCATGCCTGCCTGGATGCTGATTCCTGCA  50

seq1  TTGATGATAATGGACTGAACCTCTGAACCTATAAGCCAGACCCTAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATAATGGACTGAACCTCTGAACCTATAAGCCAGACCCTAATTAA  100

seq1  ATGCTGTCCTTGTAAGAGTTGCCTTGTTCATGGTATCAGTTCACAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCCTTGTAAGAGTTGCCTTGTTCATGGTATCAGTTCACAGCAGT  150

seq1  AAAATCCTAACTAAGACAACATCTTTTATATTCTTATAAAATTAACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAACTAAGACAACATCTTTTATATTCTTATAAAATTAACAAAT  200

seq1  ACTAAGAAGTTGACATCACAAAGGAAGTGTTTGTTATAAGATCTTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAGTTGACATCACAAAGGAAGTGTTTGTTATAAGATCTTTAGAA  250

seq1  TTTGCAGAACAAAAGATGTAGAGAGTGTCTGGAATGAATTGGAGGATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAACAAAAGATGTAGAGAGTGTCTGGAATGAATTGGAGGATGGG  300

seq1  ACTATCATAATATATCAAAATATATTGTACTGAAAAAATTCTTTTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCATAATATATCAAAATATATTGTACTGAAAAAATTCTTTTAATAA  350

seq1  CACAAAATTATATAACAAAACAATGAGAGACAAGAAAATTAGTAGGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTATATAACAAAACAATGAGAGACAAGAAAATTAGTAGGGATC  400

seq1  CAATACAAAGTATTTGGAAATAACTGATTCAAAGTCTCAAGAATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAAGTATTTGGAAATAACTGATTCAAAGTCTCAAGAATAAAAAT  450

seq1  TAAACTTACAGATTAAATATATGTAGCAAAGTTTAAGAAAAGTAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTACAGATTAAATATATGTAGCAAAGTTTAAGAAAAGTAGAAATT  500

seq1  CTGTGATTTTTGTTTCATTTTTGAAAGTGTGTCTGTTTCAGGCTGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTTTGTTTCATTTTTGAAAGTGTGTCTGTTTCAGGCTGTATAT  550

seq1  AAGAAACATTTCTTCATTGTATGAGAATATTAATAGTAGGAATAATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATTTCTTCATTGTATGAGAATATTAATAGTAGGAATAATAATA  600

seq1  CCAGAAAGGTAAGAGCAATGAAATCTAAGCTTTAACTAACTTTGTGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGGTAAGAGCAATGAAATCTAAGCTTTAACTAACTTTGTGTATT  650

seq1  AATATTTAACTGGTTTTTAATATAAAACCATTAATCTATTTAATATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAACTGGTTTTTAATATAAAACCATTAATCTATTTAATATATTT  700

seq1  GAGAATGACTGAAAGGCAGAGATCAATCATCAATCTTGTTGTCTGAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGACTGAAAGGCAGAGATCAATCATCAATCTTGTTGTCTGAGATT  750

seq1  AATCCCGCAATCTTTTATATTGTGAATTGAGTCAAATCAGTTTTGGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGCAATCTTTTATATTGTGAATTGAGTCAAATCAGTTTTGGTTTG  800

seq1  GAGATGTATTAACTTTAGAAAACAAGTATAAAAGTTTCTTTAAAGCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTATTAACTTTAGAAAACAAGTATAAAAGTTTCTTTAAAGCTTTG  850

seq1  GCAGCCTTGTGGTGATCAGTAGTCATTGTTAAAGTAAATAACTGAGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTGTGGTGATCAGTAGTCATTGTTAAAGTAAATAACTGAGAGCA  900

seq1  ATAATTTAAAAGGAGAGGAATTTTTCTTTTGCTGCCTGGTTTCAGAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAAAGGAGAGGAATTTTTCTTTTGCTGCCTGGTTTCAGAGATG  950

seq1  TCAGTCCATTTTCAGAGAGACTTATAAATTTGAGCCCTAATTGAAGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCATTTTCAGAGAGACTTATAAATTTGAGCCCTAATTGAAGCAGA  1000

seq1  AAATATGGCACCAGAATATTTTGAAGGGGAATTTCTCCACTTAAACTTAG  1050
      ||| |||||| ||| |||||||||  ||||  |||| | |||||||||||
seq2  AAA-ATGGCATCAG-ATATTTTGA--GGGA--TTCTTCCCTTAAACTTAG  1044

seq1  TCTAGATGTAAGTAGAGTGAGAAAAGTTGGGACTCAGAGCAGTATTGTAC  1100
      ||||||||| ||||||||||||||||| ||  |||||||||||| |||||
seq2  TCTAGATGT-AGTAGAGTGAGAAAAGTGGGACCTCAGAGCAGTA-TGTAC  1092

seq1  TCCTAGCACACA-CTCAAGGACCCACATGAACAGTTTAAGCTCACTTTCT  1149
      |||||||||||| ||||  ||| |||||||||||||  ||||||||||||
seq2  TCCTAGCACACACCTCA--GACTCACATGAACAGTT--AGCTCACTTTCT  1138

seq1  GTATTCTCAATACTCACAAAAATATATCAATCTGTTAACTAAGTCAAGAT  1199
      | |||||||| |||||||||| ||| |||||||||  ||| |||||||||
seq2  G-ATTCTCAA-ACTCACAAAATTAT-TCAATCTGT--ACT-AGTCAAGAT  1182

seq1  CT  1201
      ||
seq2  CT  1184

seq1: chr11_93922290_93922577
seq2: B6Ng01-062J04.g_643_929 (reverse)

seq1  TAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGC  50
      ||||||||| | ||| ||||||||||||| ||||||||| ||||||||||
seq2  TAGCTCCTCTA-TGGAAGCCCTGTGATCC-TCCATTAGCCGACTGTGAGC  48

seq1  ATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCAC-AAGAGACAGC  99
      |||||||| |||||| ||||||||||||||||||||||| ||||||||||
seq2  ATCCACTTTTGTGTTGGCTAGGCCCCGGCATAGTCTCACAAAGAGACAGC  98

seq1  TACATCTGGGTCCTTTCGAT-AAAATCTTGCTAGTATATGCAATGGTGTC  148
      ||||||||||||| |||||| |||||||||||||| ||||||||||||||
seq2  TACATCTGGGTCC-TTCGATAAAAATCTTGCTAGTGTATGCAATGGTGTC  147

seq1  AGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTA  197

seq1  CATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTTTGTAACTCCTT  248
       ||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  GATGGTCCATCCTTTCATCTCAGCTCCACACTTTGTCTCTGTAACTCCTT  247

seq1  CCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGT  288
      ||| |||||||||||||||| |||||||||||||||||||
seq2  CCAAGGGTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGT  287