BAC Information

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BAC

Clone NameB6Ng01-062O03
Chromosome15 (Build37)
Map Location 47,770,483 - 47,921,168
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O03.bB6Ng01-062O03.g
ACCDH883141DH883142
length1,104978
definitionDH883141|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O03, 5' end.DH883142|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,770,483 - 47,771,598)(47,920,191 - 47,921,168)
sequence
gaattcatgatagaggaagtggaccaacaaagggaaaatgtcaagcagga
gagtgacatcatcaaaattgtatcataggaggttaattttttttcccacc
aatatgttattaaagtaataaggtagataatgacagacaatattgtcaat
gtgaattatgatatagaaaaacattggagaaacaactgactataattctg
gatgtttctgcaaatgaacaatactattgctgtttattaattttattttt
aaatagatatccctcaggttgaaaaattggtttatttgctctggatagct
gagcttgtgaacagagcagactctaaagtggtttaacattgtaatttaga
gactgtatgtagttatttgggaatgaaacagtatacaatgtggttctatt
tcaggaagccaaatgcaaatagaagaatggtaatataagacactgaagcc
aactattgaagtgttaagcttatccagtaagcaatggttcagttcctttg
tgtttaatcagacagtagagaaatctgtggaattttctagggataactga
caggttgacccgaatttaagatgaactctcagcatattctttttctgata
ttcacagatatcatcccagccaccttcctttgacataaggtggaacctgt
ggtttgctctttgttactttctgtgattatgtgcataatttagatcttca
actttctagagaactcactggagaacatcactgtgtgggactgatgatct
aaacagcttcactgacaagtctaagagctaaggaaatacagacaaaccta
agtaaagaactgcggagcatagtttccagaactattcagacctgattata
tccaatgagctctatgagtttggaagagggggctgaagctcagtaagagc
ttattcctaggcaacctcttgattgtggcttctgagaccataaaaccatc
gagttcacatgatacaaacccaggcttctacctcacaaactcatagaaag
aatgtgttgcttcagcatatcattgtatgattgttatttattcctcaaaa
cttatggtgactattgccatcatcatcaaagatatttcagaatgcaacag
ctat
gaattctggacactgggatttgatttgttactttaaaagcatgagattga
aaagggataaattaccattaacattccatacttcgtctaataaaaatata
aaataatctaaggatctgtgcttggtttgaacaagtgttcacaaaaatga
tagaactctttgatagtatctaattaaataattaagttactttgatatga
ttattttgtcactgcagtttgctattattaatcctttcagctgtccctga
aatacacccttgcaggattcttttgtatatttcatacatctaaatgtttt
ataatatctgactagaataggcaaattctttctagttctttgtgtaatga
ctttcagtatagatctatgcaagagaataagattttacaggaaaagaatt
tgcgaaccttgaaacttatattgctctttcttctccattgttatagcctg
gtggcattatatttgatcacagtattatttctcatatgttttttctactg
aattataaaaaccacattgacattccccagcctaaagattacattctttg
aagtgatgacagtgctgctagccaaagcttgaatttagattgtaagaaaa
tattcagtctttctttcccttaatagcacaaggcctgttgaatatttaat
tattttccttataatggtaaacagtagacaatcttccctcaaaggaacaa
cacacttctttattattctatgatgctaacatgtcttcttttaattgcac
tgtttgctattaacagtgatgtttaataaattctgtggttaattattctt
tattataaaatgttagttctaaagacagtaatttgagtgtttctatgtaa
caaactcatggaaatcagtcttattgtcaaggggaagcagaggtgcttaa
attaagaagtatatggccaagtcatctctctctctctctctctctctctc
tctctctctctctctctctctcttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47770483_47771598
seq2: B6Ng01-062O03.b_48_1151

seq1  GAATTCATGATAGAGGAAGTGGACCAACAAAGGGAAAATGTCAAGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATAGAGGAAGTGGACCAACAAAGGGAAAATGTCAAGCAGGA  50

seq1  GAGTGACATCATCAAAATTGTATCATAGGAGGTTAATTTTTTTTCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACATCATCAAAATTGTATCATAGGAGGTTAATTTTTTTTCCCACC  100

seq1  AATATGTTATTAAAGTAATAAGGTAGATAATGACAGACAATATTGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTATTAAAGTAATAAGGTAGATAATGACAGACAATATTGTCAAT  150

seq1  GTGAATTATGATATAGAAAAACATTGGAGAAACAACTGACTATAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTATGATATAGAAAAACATTGGAGAAACAACTGACTATAATTCTG  200

seq1  GATGTTTCTGCAAATGAACAATACTATTGCTGTTTATTAATTTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTGCAAATGAACAATACTATTGCTGTTTATTAATTTTATTTTT  250

seq1  AAATAGATATCCCTCAGGTTGAAAAATTGGTTTATTTGCTCTGGATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATATCCCTCAGGTTGAAAAATTGGTTTATTTGCTCTGGATAGCT  300

seq1  GAGCTTGTGAACAGAGCAGACTCTAAAGTGGTTTAACATTGTAATTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTGAACAGAGCAGACTCTAAAGTGGTTTAACATTGTAATTTAGA  350

seq1  GACTGTATGTAGTTATTTGGGAATGAAACAGTATACAATGTGGTTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATGTAGTTATTTGGGAATGAAACAGTATACAATGTGGTTCTATT  400

seq1  TCAGGAAGCCAAATGCAAATAGAAGAATGGTAATATAAGACACTGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCCAAATGCAAATAGAAGAATGGTAATATAAGACACTGAAGCC  450

seq1  AACTATTGAAGTGTTAAGCTTATCCAGTAAGCAATGGTTCAGTTCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGAAGTGTTAAGCTTATCCAGTAAGCAATGGTTCAGTTCCTTTG  500

seq1  TGTTTAATCAGACAGTAGAGAAATCTGTGGAATTTTCTAGGGATAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCAGACAGTAGAGAAATCTGTGGAATTTTCTAGGGATAACTGA  550

seq1  CAGGTTGACCCGAATTTAAGATGAACTCTCAGCATATTCTTTTTCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACCCGAATTTAAGATGAACTCTCAGCATATTCTTTTTCTGATA  600

seq1  TTCACAGATATCATCCCAGCCACCTTCCTTTGACATAAGGTGGAACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGATATCATCCCAGCCACCTTCCTTTGACATAAGGTGGAACCTGT  650

seq1  GGTTTGCTCTTTGTTACTTTCTGTGATTATGTGCATAATTTAGATCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTCTTTGTTACTTTCTGTGATTATGTGCATAATTTAGATCTTCA  700

seq1  ACTTTCTAGAGAACTCACTGGAGAACATCACTGTGTGGGACTGATGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGAGAACTCACTGGAGAACATCACTGTGTGGGACTGATGATCT  750

seq1  AAACAGCTTCACTGACAAGTCTAAGAGCTAAGGAAATACAGACAAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTCACTGACAAGTCTAAGAGCTAAGGAAATACAGACAAACCTA  800

seq1  AGTAAAGAACTGCGGAGCATAGTTTCCAGAACTATTCAGACCTGATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAACTGCGGAGCATAGTTTCCAGAACTATTCAGACCTGATTATA  850

seq1  TCCAATGAGCTCTATGAGTTTGGAAGAGGGGGCTGAAGCTCAGGTAAGAG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCAATGAGCTCTATGAGTTTGGAAGAGGGGGCTGAAGCTCA-GTAAGAG  899

seq1  CTTATTCCTAGGCAACCTCTTGATTGTGGCTTCTGAGACCATAAAACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCTAGGCAACCTCTTGATTGTGGCTTCTGAGACCATAAAACCAT  949

seq1  CGAGTTCACATGATACAAACCCAGGCTTCTACCCCACAAACCCATAAGAA  1000
      ||||||||||||||||||||||||||||||||| ||||||| ||| ||||
seq2  CGAGTTCACATGATACAAACCCAGGCTTCTACCTCACAAACTCAT-AGAA  998

seq1  AGAAATTGTGTTGCTTCAAGCATATCAATTTGTATTGATTTGTTATTTAT  1050
      ||||  ||||||||||| |||||||||  ||||| ||| |||||||||||
seq2  AGAA--TGTGTTGCTTC-AGCATATCA--TTGTA-TGA-TTGTTATTTAT  1041

seq1  TCTCAAAAACCTAATGTGACTATTGCCATCATCATCAAAAGATATTTCAA  1100
      ||   ||||| ||  ||||||||||||||||||||| ||||||||||| |
seq2  TCCTCAAAACTTATGGTGACTATTGCCATCATCATC-AAAGATATTTC-A  1089

seq1  GAATGCAACAAGCTAT  1116
      ||||||||| ||||||
seq2  GAATGCAAC-AGCTAT  1104

seq1: chr15_47920191_47921168
seq2: B6Ng01-062O03.g_65_1042 (reverse)

seq1  AGAGAAGAGAAGAGA-AGAGA-AGAGAGAGAGAGAGAGAGAGAGAGAGAG  48
      ||||||||| ||||| ||||| ||||||||||||||||||||||||||||
seq2  AGAGAAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  49

seq1  AGAGATGACTTGGCCATATACTTTCTTAATTTAAGCACCTCTGCTTCCCC  98
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGATGACTTGGCCATATAC-TTCTTAATTTAAGCACCTCTGCTTCCCC  98

seq1  TTGACAATAAGACTGATTTCCATGAGTTTGTTACATAGAAACACTCAAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATAAGACTGATTTCCATGAGTTTGTTACATAGAAACACTCAAAT  148

seq1  TACTGTCTTTAGAACTAACATTTTATAATAAAGAATAATTAACCACAGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTTTAGAACTAACATTTTATAATAAAGAATAATTAACCACAGAA  198

seq1  TTTATTAAACATCACTGTTAATAGCAAACAGTGCAATTAAAAGAAGACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAACATCACTGTTAATAGCAAACAGTGCAATTAAAAGAAGACAT  248

seq1  GTTAGCATCATAGAATAATAAAGAAGTGTGTTGTTCCTTTGAGGGAAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCATAGAATAATAAAGAAGTGTGTTGTTCCTTTGAGGGAAGAT  298

seq1  TGTCTACTGTTTACCATTATAAGGAAAATAATTAAATATTCAACAGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTGTTTACCATTATAAGGAAAATAATTAAATATTCAACAGGCCT  348

seq1  TGTGCTATTAAGGGAAAGAAAGACTGAATATTTTCTTACAATCTAAATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTAAGGGAAAGAAAGACTGAATATTTTCTTACAATCTAAATTC  398

seq1  AAGCTTTGGCTAGCAGCACTGTCATCACTTCAAAGAATGTAATCTTTAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGGCTAGCAGCACTGTCATCACTTCAAAGAATGTAATCTTTAGG  448

seq1  CTGGGGAATGTCAATGTGGTTTTTATAATTCAGTAGAAAAAACATATGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAATGTCAATGTGGTTTTTATAATTCAGTAGAAAAAACATATGAG  498

seq1  AAATAATACTGTGATCAAATATAATGCCACCAGGCTATAACAATGGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACTGTGATCAAATATAATGCCACCAGGCTATAACAATGGAGAA  548

seq1  GAAAGAGCAATATAAGTTTCAAGGTTCGCAAATTCTTTTCCTGTAAAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCAATATAAGTTTCAAGGTTCGCAAATTCTTTTCCTGTAAAATC  598

seq1  TTATTCTCTTGCATAGATCTATACTGAAAGTCATTACACAAAGAACTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTTGCATAGATCTATACTGAAAGTCATTACACAAAGAACTAGA  648

seq1  AAGAATTTGCCTATTCTAGTCAGATATTATAAAACATTTAGATGTATGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGCCTATTCTAGTCAGATATTATAAAACATTTAGATGTATGAA  698

seq1  ATATACAAAAGAATCCTGCAAGGGTGTATTTCAGGGACAGCTGAAAGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAAAGAATCCTGCAAGGGTGTATTTCAGGGACAGCTGAAAGGAT  748

seq1  TAATAATAGCAAACTGCAGTGACAAAATAATCATATCAAAGTAACTTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGCAAACTGCAGTGACAAAATAATCATATCAAAGTAACTTAAT  798

seq1  TATTTAATTAGATACTATCAAAGAGTTCTATCATTTTTGTGAACACTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTAGATACTATCAAAGAGTTCTATCATTTTTGTGAACACTTGT  848

seq1  TCAAACCAAGCACAGATCCTTAGATTATTTTATATTTTTATTAGACGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCAAGCACAGATCCTTAGATTATTTTATATTTTTATTAGACGAAG  898

seq1  TATGGAATGTTAATGGTAATTTATCCCTTTTCAATCTCATGCTTTTAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATGTTAATGGTAATTTATCCCTTTTCAATCTCATGCTTTTAAAG  948

seq1  TAACAAATCAAATCCCAGTGTCCAGAATTC  978
      ||||||||||||||||||||||||||||||
seq2  TAACAAATCAAATCCCAGTGTCCAGAATTC  978