BAC Information

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BAC

Clone NameB6Ng01-064I01
Chromosome15 (Build37)
Map Location 30,133,238 - 30,134,339
singlet/doubletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064I01.bB6Ng01-064I01.g
ACCDH884271DH884272
length1,0881,237
definitionDH884271|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I01, 5' end.DH884272|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gtcatttgggctctgcttctcccataaatgtaaatttctgtccagttcca
gaatattgtaatcatatatatgaagaaaatataaaagaagataatataca
attagagatagtaaagaaatcgagtaaagaaaccaggttgcttaagacaa
cggctgaattcacaacaataaattctagaattctcttcaacaattctgta
tgaaagccttgtgagtatttgaagtcagaagtgcacctaagctaataggc
acttatttaaggtttcatctgcggtccacctgggacagaacctggagtcc
tttcaacagctccgggctgctcttcttgtccctcaccgctctatcaaacc
ctgaccatgaatgtgaagtagagcatgatgcaataactttcttagagctc
agagcagcttctccaagtcgtaactgctgcttggttcatcaataaccgat
aagataacattttcctcaaagggggggcgggggaggaaagttccaagagc
caggtcacaggaagacagaatcgagtagtcatttacaaaggatgctacaa
ttcctagagatccatactacatcatttggtgcaaatcaccattgtactac
aaaagaaatacggaagtaacatcaagcaaagaaagcactgcgtgataaat
ttagaaatcccttgactgtgattcataaaacttgagtgcacttgtagcgg
ggaaagttactgtttcatcccaaggtggtgtcacctggaaagaaaagctt
ctttcttcgtctcaagtcccctggcacagtctggcagtctccgccgtggc
ttcacagttaacttgactggactgacgcacttgtctacacacaatctgtg
ttaacagactcacacaactgtgggattagataatttgtcaccatggaggc
ttctcctacacaaggcaagacactggcgacttctctggactctacagcct
agaggtcattagcagtggcatcctcgtaccagctgataagaaaacgaaac
aaaaaacaaacaccagcctcagcagtgactaaagtaaccccagagcatca
gcatcacattgggaattaccacagcagccatggagcct
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacagaatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgcgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagacccccgtgctctcaccagga
aggtggccggctgtctggagctgaagatggcgccgcccagaagctctgcg
actctctcgcccgtcccagaaacagctggcactctgtatcccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaggctcccgc
cggcgcctgttgccacaacctctcaggccaggcagaccccgtgctctcac
caggaagtgcccgctgtctggagctaaagatgcgccgcccagagttctgc
gactctctcgcccgtccagaaaatgctgcactctgtattccacgtcaccc
gtgcagcttgcctcgcgagttccgagccagaagctcccgccgggctgtgc
cacaacctctcagcaggcagaaccctggtctcaccagtaaggtgtgccgc
ttcttagctgaaaatgagcgcccaaagcctgcgatctcttgcccgcccag
aacgacaggatctgtattcaggactggatcgatgccatccggatgtcagt
gagcagatggagtcctcgcggtctgtgcgtcgtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30133238_30134339
seq2: B6Ng01-064I01.b_50_1137 (reverse)

seq1  AGGCTCCATGGGCTGCTTGTGGTAATTTCTCAATGGTGGATGCTGATGCT  50
      ||||||||| |||||| |||||||| ||| |||||   ||||||||||||
seq2  AGGCTCCAT-GGCTGC-TGTGGTAA-TTCCCAATG--TGATGCTGATGCT  45

seq1  CTGTGGGTCACTTTTTAGTCACTGGCTGAGGCTGGTGTTTTTGTTTTTTG  100
      ||| |||| ||  |||||||||| |||||||||||||  |||||||||||
seq2  CTG-GGGTTAC--TTTAGTCACT-GCTGAGGCTGGTG--TTTGTTTTTTG  89

seq1  TTTTTGTTTTTCTTTCTCAGCTGGGTACGAGGGATGCCACTGCTAATGAC  150
       ||| |||||   || |||||| ||||||| |||||||||||||||||||
seq2  -TTTCGTTTT--CTTATCAGCT-GGTACGA-GGATGCCACTGCTAATGAC  134

seq1  CTCTAGGCTGTAGAGTCCAGAGAAGTCGCCAGTGTCTTGCCTTGTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTGTAGAGTCCAGAGAAGTCGCCAGTGTCTTGCCTTGTGTAGG  184

seq1  AG-AGCCTCCATGGTGAACAATTATCTAAT-CCACAGTTGTGTGAGTCTG  248
      || ||||||||||||||  ||||||||||| |||||||||||||||||||
seq2  AGAAGCCTCCATGGTGACAAATTATCTAATCCCACAGTTGTGTGAGTCTG  234

seq1  TTAACACAGATTGTGTGTAGACAAGTGCGTCAGTCCAGTCAAGTTAACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGATTGTGTGTAGACAAGTGCGTCAGTCCAGTCAAGTTAACTG  284

seq1  TGAAGCCACGGCGGAGACTGCCAGACTGTGCCAGGGGACTTGAGACGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCACGGCGGAGACTGCCAGACTGTGCCAGGGGACTTGAGACGAAG  334

seq1  AAAGAAGCTTTTCTTTCCAGGTGACACCACCTTGGGATGAAACAGTAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTTTTCTTTCCAGGTGACACCACCTTGGGATGAAACAGTAACT  384

seq1  TTCCCCGCTACAAGTGCACTCAAGTTTTATGAATCACAGTCAAGGGATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGCTACAAGTGCACTCAAGTTTTATGAATCACAGTCAAGGGATTT  434

seq1  CTAAATTTATCACGCAGTGCTTTCTTTGCTTGATGTTACTTCCGTATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTATCACGCAGTGCTTTCTTTGCTTGATGTTACTTCCGTATTTC  484

seq1  TTTTGTAGTACAATGGTGATTTGCACCAAATGATGTAGTATGGATCTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTACAATGGTGATTTGCACCAAATGATGTAGTATGGATCTCTA  534

seq1  GGAATTGTAGCATCCTTTGTAAATGACTACTCGATTCTGTCTTCCTGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTAGCATCCTTTGTAAATGACTACTCGATTCTGTCTTCCTGTGA  584

seq1  CCTGGCTCTTGGAACTTTCCTCCCCCGCCCCCCCTTTGAGGAAAATGTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTTGGAACTTTCCTCCCCCGCCCCCCCTTTGAGGAAAATGTTA  634

seq1  TCTTATCGGTTATTGATGAACCAAGCAGCAGTTACGACTTGGAGAAGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCGGTTATTGATGAACCAAGCAGCAGTTACGACTTGGAGAAGCTG  684

seq1  CTCTGAGCTCTAAGAAAGTTATTGCATCATGCTCTACTTCACATTCATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTCTAAGAAAGTTATTGCATCATGCTCTACTTCACATTCATGG  734

seq1  TCAGGGTTTGATAGAGCGGTGAGGGACAAGAAGAGCAGCCCGGAGCTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTTGATAGAGCGGTGAGGGACAAGAAGAGCAGCCCGGAGCTGTT  784

seq1  GAAAGGACTCCAGGTTCTGTCCCAGGTGGACCGCAGATGAAACCTTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTCCAGGTTCTGTCCCAGGTGGACCGCAGATGAAACCTTAAAT  834

seq1  AAGTGCCTATTAGCTTAGGTGCACTTCTGACTTCAAATACTCACAAGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTATTAGCTTAGGTGCACTTCTGACTTCAAATACTCACAAGGCT  884

seq1  TTCATACAGAATTGTTGAAGAGAATTCTAGAATTTATTGTTGTGAATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGAATTGTTGAAGAGAATTCTAGAATTTATTGTTGTGAATTCA  934

seq1  GCCGTTGTCTTAAGCAACCTGGTTTCTTTACTCGATTTCTTTACTATCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGTCTTAAGCAACCTGGTTTCTTTACTCGATTTCTTTACTATCTC  984

seq1  TAATTGTATATTATCTTCTTTTATATTTTCTTCATATATATGATTACAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATATTATCTTCTTTTATATTTTCTTCATATATATGATTACAAT  1034

seq1  ATTCTGGAACTGGACAGAAATTTACATTTATGGGAGAAGCAGAGCCCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAACTGGACAGAAATTTACATTTATGGGAGAAGCAGAGCCCAAA  1084

seq1  TGAC  1102
      ||||
seq2  TGAC  1088