BAC Information

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BAC

Clone NameB6Ng01-064O02
Chromosome15 (Build37)
Map Location 76,327,581 - 76,485,513
singlet/doubletdoublet
Overlap geneHsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1
Upstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx
Downstream geneKifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O02.bB6Ng01-064O02.g
ACCDH884535DH884536
length1,0421,062
definitionDH884535|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O02, 5' end.DH884536|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,327,581 - 76,328,632)(76,484,452 - 76,485,513)
sequence
gaattcacattttcaggatttgagcacacaaagcccatttccaggtgcct
ccctaaaaaccaggcctgacaggagctgaccacaacagtccttgggccag
acctctctactgttctctagtcacaatgactcaactcgccctttatcact
cactcagcacagttcacagctgccttctaccccaaaactgagggtaatct
gtagtttaggatctttcccagagacctgtcctgtgtgcctagccagtatg
taacaagtgccccattgcagctaggatcctaaggtaccatcagattctat
ccatgccctccctcagccctggctgacgtttgaatcctgccctgtaagta
gagtggagttagggaatcagttgtgcagtgagccctcatctggtccagcc
ctgtccatcaacagcctgattctctggctcttctaatgtggcccaattga
cccagcaatgtgttgcagcgagaacgaggccctgtggcgggaggtggcca
gccttcggcagaagcatgcccagcagcaaaaagttgtcaacaaggtgggc
agggctggtggtaggtgggtcccctccatgactgggccagggtgacagta
tcctttctgccccacagctcattcagttcctgatctcactggtgcagtcg
aaccggatcctgggggtgaagagaaagatgtgaggctctgggaatgtcta
cactgtccactctgaccctgcgctttggtgtcctctgcttgctgtatatc
ctgggcaccaccaaggtctgtgtaggcagttgacctgtctcttccctgca
gccctctgatgttgagtgacagcaactcagcacacttctgtgcccaatta
tggtcgacagtactccctggagcatgtccatgggtcctggcccatactca
gttagcaccaagctccatgggactgccagtaagtgtgcatgggtgctggt
tgcccaggctacacagtagcttgcatgtggcttttttctcatttgcagct
catcttaagctacagcagctctagccttactctctgatgctg
gaattcaggggtttcccagttggtcctggcatgatggtaggccacatggc
attggctcctggtctacacagagagccacagttctgcttctgcccaaagt
ggctaatgagactagctggttcaaaccagtctacacactgtgttagttgt
tgctctgggttgggcatctgaagtcaggcagctgagggatgtactagatg
aagtgagtggaggggctgccttcccagatcctgacccagggggaaggctg
ccaggttctctgagatgagctgtgtgcattgacattgatctccaagccct
gccactagcctccttcgcacctcccttctgccagggtagatacctagatg
cttccctgtcctaaggactgggagagtcctctagaatatgtcattttgga
agagtcttgggcaaatgctggaactttgactgtccacagatagcatgtaa
aatgggagtgcagcaagaagaataaggaagggaacgtcctggtgtctagg
aatgctgccagaaacacttcatggcagtctccttacatgtgccgtacagc
cctgcctggagggtcctgttgctgtcttactaaggtaccaggcaggcctc
cccaggcttctttcctggtcttctcaggatccgagcacagactatccctg
gtagtgatctagtgtgggtcatcacctctgcctgcgctcagctcttctat
cttctgctagctttcctgtctatcccgtgttgatgggctgtctccgtagt
tgccaccttcagctgttgctggcaacatttgcctgacctcagcagaacac
ttagctccaggtggcaccagccatgctgtgcattctgggggctgactctt
ggctctgctgggggtataagaagtgggtaactatgctacgtctggccact
gggcttggggggaagctacgggctgctgaggtttgctagtggcttgttac
ttgagagtgtatcatatgtccaccctgggaagcctgagtactcttggagg
cagactagaacagattcagccttgtatgcggggttcgtccccctgggctt
gagaacagcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76327581_76328632
seq2: B6Ng01-064O02.b_43_1084

seq1  GAATTCACATTTTCAGGATTTGAGCACACAAAGCCCATTTCCAGGTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTCAGGATTTGAGCACACAAAGCCCATTTCCAGGTGCCT  50

seq1  CCCTAAAAACCAGGCCTGACAGGAGCTGACCACAACAGTCCTTGGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAACCAGGCCTGACAGGAGCTGACCACAACAGTCCTTGGGCCAG  100

seq1  ACCTCTCTACTGTTCTCTAGTCACAATGACTCAACTCGCCCTTTATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTACTGTTCTCTAGTCACAATGACTCAACTCGCCCTTTATCACT  150

seq1  CACTCAGCACAGTTCACAGCTGCCTTCTACCCCAAAACTGAGGGTAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCACAGTTCACAGCTGCCTTCTACCCCAAAACTGAGGGTAATCT  200

seq1  GTAGTTTAGGATCTTTCCCAGAGACCTGTCCTGTGTGCCTAGCCAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAGGATCTTTCCCAGAGACCTGTCCTGTGTGCCTAGCCAGTATG  250

seq1  TAACAAGTGCCCCATTGCAGCTAGGATCCTAAGGTACCATCAGATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTGCCCCATTGCAGCTAGGATCCTAAGGTACCATCAGATTCTAT  300

seq1  CCATGCCCTCCCTCAGCCCTGGCTGACGTTTGAATCCTGCCCTGTAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCTCCCTCAGCCCTGGCTGACGTTTGAATCCTGCCCTGTAAGTA  350

seq1  GAGTGGAGTTAGGGAATCAGTTGTGCAGTGAGCCCTCATCTGGTCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGTTAGGGAATCAGTTGTGCAGTGAGCCCTCATCTGGTCCAGCC  400

seq1  CTGTCCATCAACAGCCTGATTCTCTGGCTCTTCTAATGTGGCCCAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCAACAGCCTGATTCTCTGGCTCTTCTAATGTGGCCCAATTGA  450

seq1  CCCAGCAATGTGTTGCAGCGAGAACGAGGCCCTGTGGCGGGAGGTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAATGTGTTGCAGCGAGAACGAGGCCCTGTGGCGGGAGGTGGCCA  500

seq1  GCCTTCGGCAGAAGCATGCCCAGCAGCAAAAAGTTGTCAACAAGGTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGCAGAAGCATGCCCAGCAGCAAAAAGTTGTCAACAAGGTGGGC  550

seq1  AGGGCTGGTGGTAGGTGGGTCCCCTCCATGACTGGGCCAGGGTGACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGTGGTAGGTGGGTCCCCTCCATGACTGGGCCAGGGTGACAGTA  600

seq1  TCCTTTCTGCCCCACAGCTCATTCAGTTCCTGATCTCACTGGTGCAGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGCCCCACAGCTCATTCAGTTCCTGATCTCACTGGTGCAGTCG  650

seq1  AACCGGATCCTGGGGGTGAAGAGAAAGATGTGAGGCTCTGGGAATGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGATCCTGGGGGTGAAGAGAAAGATGTGAGGCTCTGGGAATGTCTA  700

seq1  CACTGTCCACTCTGACCCTGCGCTTTGGTGTCCTCTGCTTGCTGTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCACTCTGACCCTGCGCTTTGGTGTCCTCTGCTTGCTGTATATC  750

seq1  CTGGGCACCACCAAGGTCTGTGTAGGCAGTTGACCTGTCTCTTCCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACCACCAAGGTCTGTGTAGGCAGTTGACCTGTCTCTTCCCTGCA  800

seq1  GCCCTCTGATGTTGAGTGACAGCAACTCAGCACAC-TCTGTGCCCAAGTA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GCCCTCTGATGTTGAGTGACAGCAACTCAGCACACTTCTGTGCCCAATTA  850

seq1  TGGTCGACAGTACTCCCTGGAGCATGTCCAT-GGTCCTGGCCCATACTCA  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTCGACAGTACTCCCTGGAGCATGTCCATGGGTCCTGGCCCATACTCA  900

seq1  GTAAGCACCAAGCTCCATGGGACTGCCAGTAAGTGTGCAGTGGGTGCTGG  948
      || |||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GTTAGCACCAAGCTCCATGGGACTGCCAGTAAGTGTGCA-TGGGTGCT-G  948

seq1  GTGGCCCAGGCTACCACAGGTATGCCTTGCATGTGGCCTTTGTCTCTAAT  998
      || |||||||||| |||||   |  |||||||||||| ||| |||| | |
seq2  GTTGCCCAGGCTA-CACAG---TAGCTTGCATGTGGCTTTTTTCTC-ATT  993

seq1  TGCAGGCTCCATCTCCAGCCTACAGCAGCTCTAGCCTTTACTCCTCTGAT  1048
      |||| ||| |||||  || ||||||||||||||||| ||||| |||||||
seq2  TGCA-GCT-CATCTTAAG-CTACAGCAGCTCTAGCC-TTACT-CTCTGAT  1038

seq1  GCTG  1052
      ||||
seq2  GCTG  1042

seq1: chr15_76484452_76485513
seq2: B6Ng01-064O02.g_71_1132 (reverse)

seq1  AAGGCTG-TCTCAGGCCCAGGTGGACG-AGCCCGCATACACAGGCTGAAT  48
      ||||||| ||||| ||||||| ||||| | |||||||||| |||||||||
seq2  AAGGCTGTTCTCAAGCCCAGGGGGACGAACCCCGCATACA-AGGCTGAAT  49

seq1  CTGTTCTTGTCTGCCTCCAAGAGGTTCTCTGGCTTCACA-GGTGG-CATA  96
      ||||||| |||||||||||||| || ||| |||||| || ||||| ||||
seq2  CTGTTCTAGTCTGCCTCCAAGA-GTACTCAGGCTTCCCAGGGTGGACATA  98

seq1  TGGATAACACTCTCAAGTTACCATGCACCTAGCCAACCTCAGCAGCCCGT  146
      | ||| ||||||||||| || || ||  ||||| ||||||||||||||||
seq2  T-GAT-ACACTCTCAAG-TAACAAGCCACTAGCAAACCTCAGCAGCCCGT  145

seq1  AGCTTCCCCCCAAGCCCAGT-GCCAGACGTAGCATGGTTACCCACTTCTT  195
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AGCTTCCCCCCAAGCCCAGTGGCCAGACGTAGCATAGTTACCCACTTCTT  195

seq1  ATCACCCCAGCAGAGCCAAGAGTCAGCCCCCAGAATGCACAGCATGGCTG  245
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCCAGCAGAGCCAAGAGTCAGCCCCCAGAATGCACAGCATGGCTG  245

seq1  GTGCCACCTGGAGCTAAGTGTTCTGCTGAGGTCAGGCAAATGTTGCCAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCTGGAGCTAAGTGTTCTGCTGAGGTCAGGCAAATGTTGCCAGC  295

seq1  AACAGCTGAAGGTGGCAACTACGGAGACAGCCCATCAACACGGGATAGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGAAGGTGGCAACTACGGAGACAGCCCATCAACACGGGATAGAC  345

seq1  AGGAAAGCTAGCAGAAGATAGAAGAGCTGAGCGCAGGCAGAGGTGATGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTAGCAGAAGATAGAAGAGCTGAGCGCAGGCAGAGGTGATGAC  395

seq1  CCACACTAGATCACTACCAGGGATAGTCTGTGCTCGGATCCTGAGAAGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGATCACTACCAGGGATAGTCTGTGCTCGGATCCTGAGAAGAC  445

seq1  CAGGAAAGAAGCCTGGGGAGGCCTGCCTGGTACCTTAGTAAGACAGCAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAAGCCTGGGGAGGCCTGCCTGGTACCTTAGTAAGACAGCAAC  495

seq1  AGGACCCTCCAGGCAGGGCTGTACGGCACATGTAAGGAGACTGCCATGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTCCAGGCAGGGCTGTACGGCACATGTAAGGAGACTGCCATGAA  545

seq1  GTGTTTCTGGCAGCATTCCTAGACACCAGGACGTTCCCTTCCTTATTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGGCAGCATTCCTAGACACCAGGACGTTCCCTTCCTTATTCTT  595

seq1  CTTGCTGCACTCCCATTTTACATGCTATCTGTGGACAGTCAAAGTTCCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCACTCCCATTTTACATGCTATCTGTGGACAGTCAAAGTTCCAG  645

seq1  CATTTGCCCAAGACTCTTCCAAAATGACATATTCTAGAGGACTCTCCCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCCAAGACTCTTCCAAAATGACATATTCTAGAGGACTCTCCCAG  695

seq1  TCCTTAGGACAGGGAAGCATCTAGGTATCTACCCTGGCAGAAGGGAGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGGACAGGGAAGCATCTAGGTATCTACCCTGGCAGAAGGGAGGTG  745

seq1  CGAAGGAGGCTAGTGGCAGGGCTTGGAGATCAATGTCAATGCACACAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGAGGCTAGTGGCAGGGCTTGGAGATCAATGTCAATGCACACAGCT  795

seq1  CATCTCAGAGAACCTGGCAGCCTTCCCCCTGGGTCAGGATCTGGGAAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGAGAACCTGGCAGCCTTCCCCCTGGGTCAGGATCTGGGAAGGC  845

seq1  AGCCCCTCCACTCACTTCATCTAGTACATCCCTCAGCTGCCTGACTTCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCCACTCACTTCATCTAGTACATCCCTCAGCTGCCTGACTTCAG  895

seq1  ATGCCCAACCCAGAGCAACAACTAACACAGTGTGTAGACTGGTTTGAACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAACCCAGAGCAACAACTAACACAGTGTGTAGACTGGTTTGAACC  945

seq1  AGCTAGTCTCATTAGCCACTTTGGGCAGAAGCAGAACTGTGGCTCTCTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTCTCATTAGCCACTTTGGGCAGAAGCAGAACTGTGGCTCTCTGT  995

seq1  GTAGACCAGGAGCCAATGCCATGTGGCCTACCATCATGCCAGGACCAACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGAGCCAATGCCATGTGGCCTACCATCATGCCAGGACCAACT  1045

seq1  GGGAAACCCCTGAATTC  1062
      |||||||||||||||||
seq2  GGGAAACCCCTGAATTC  1062