BAC Information

Click to search

BAC

Clone NameB6Ng01-065C12
Chromosome15 (Build37)
Map Location 87,775,964 - 87,939,304
singlet/doubletdoublet
Overlap geneLOC100042329, LOC100042340
Upstream geneLOC100042309, AW049604
Downstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065C12.bB6Ng01-065C12.g
ACCDH884715DH884716
length743270
definitionDH884715|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C12, 5' end.DH884716|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,938,562 - 87,939,304)(87,775,964 - 87,776,233)
sequence
gaattcctgccctgtcgtccctcagtgatggatagcaacttgtaagctga
aagaaatcattccttccctatttgatcatagtgtttattccaaaaactgg
aaaccaagctagggtatcatgctccaccagttacacagtctccacacatc
tgtgacatttagattatttcaacctgtaatttttaaattgcatttattta
tttattgtttacatatggagtcagatgcgtgcggaggtcagatcataact
tatcgaaatcagctctcaccttccaccactggctcctagggatcaaaccc
agcttgccaatactgacatcaagtacttatctgctgagccatcctctccg
cccaggatggtttcagtgtttagtttgtcgtagaccttcaggtaggttta
attctccttagaatcatgacattcatgtctgtcatgggatcagcatgaaa
tgatggaagcagaatgaaaggacgctggggacagggacagcatctctatc
ctgccctcaggtggcagagaaggacctgtctggagctgggaaagtctcag
tctgtatgttttctggaaccctcaggcaaagtagtgagcaggacacccat
gcccctgaggtcctctgctcctcctcccagttgtgtggagctgacactct
cactgtgtttacagcctatcctgaaggtttgctcattggcctcagctgcc
acctggagtgtgtgtgtgtgtgtgtgtgtgtgtatgggtgtgt
accgcagctctggttacccacagggtaaccagtcaatggtccatcacaga
ctggggggaggggctcatgaagccacacccttctcaggcagctatagaga
gttattagtttctgggataaagagggccatattccttagtagcatagtca
ctgataagatgcccttacacaagtaggaattgaccagtcagtcacaatta
aatgaggcaggtcaaatacatacatacgaagatatatatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_87938562_87939304
seq2: B6Ng01-065C12.b_44_786 (reverse)

seq1  ACACACCCATACACACACACACACACACACACACACTCCAGGTGGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCATACACACACACACACACACACACACACTCCAGGTGGCAGCT  50

seq1  GAGGCCAATGAGCAAACCTTCAGGATAGGCTGTAAACACAGTGAGAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAATGAGCAAACCTTCAGGATAGGCTGTAAACACAGTGAGAGTGT  100

seq1  CAGCTCCACACAACTGGGAGGAGGAGCAGAGGACCTCAGGGGCATGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACACAACTGGGAGGAGGAGCAGAGGACCTCAGGGGCATGGGTG  150

seq1  TCCTGCTCACTACTTTGCCTGAGGGTTCCAGAAAACATACAGACTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCACTACTTTGCCTGAGGGTTCCAGAAAACATACAGACTGAGAC  200

seq1  TTTCCCAGCTCCAGACAGGTCCTTCTCTGCCACCTGAGGGCAGGATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGCTCCAGACAGGTCCTTCTCTGCCACCTGAGGGCAGGATAGAG  250

seq1  ATGCTGTCCCTGTCCCCAGCGTCCTTTCATTCTGCTTCCATCATTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCCCTGTCCCCAGCGTCCTTTCATTCTGCTTCCATCATTTCATG  300

seq1  CTGATCCCATGACAGACATGAATGTCATGATTCTAAGGAGAATTAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCATGACAGACATGAATGTCATGATTCTAAGGAGAATTAAACCT  350

seq1  ACCTGAAGGTCTACGACAAACTAAACACTGAAACCATCCTGGGCGGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGGTCTACGACAAACTAAACACTGAAACCATCCTGGGCGGAGAG  400

seq1  GATGGCTCAGCAGATAAGTACTTGATGTCAGTATTGGCAAGCTGGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCAGATAAGTACTTGATGTCAGTATTGGCAAGCTGGGTTTG  450

seq1  ATCCCTAGGAGCCAGTGGTGGAAGGTGAGAGCTGATTTCGATAAGTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGGAGCCAGTGGTGGAAGGTGAGAGCTGATTTCGATAAGTTATG  500

seq1  ATCTGACCTCCGCACGCATCTGACTCCATATGTAAACAATAAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCTCCGCACGCATCTGACTCCATATGTAAACAATAAATAAATAA  550

seq1  ATGCAATTTAAAAATTACAGGTTGAAATAATCTAAATGTCACAGATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTTAAAAATTACAGGTTGAAATAATCTAAATGTCACAGATGTGT  600

seq1  GGAGACTGTGTAACTGGTGGAGCATGATACCCTAGCTTGGTTTCCAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTGTAACTGGTGGAGCATGATACCCTAGCTTGGTTTCCAGTTT  650

seq1  TTGGAATAAACACTATGATCAAATAGGGAAGGAATGATTTCTTTCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAAACACTATGATCAAATAGGGAAGGAATGATTTCTTTCAGCTT  700

seq1  ACAAGTTGCTATCCATCACTGAGGGACGACAGGGCAGGAATTC  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGCTATCCATCACTGAGGGACGACAGGGCAGGAATTC  743

seq1: chr15_87775964_87776233
seq2: B6Ng01-065C12.g_77_346

seq1  ACCGCAGCTCTGGTTACCCACAGGGTAACCAGTCAATGGTCCATCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGCTCTGGTTACCCACAGGGTAACCAGTCAATGGTCCATCACAGA  50

seq1  CTGGGGGGAGGGGCTCATGAAGCCACACCCTTCTCAGGCAGCTATAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGAGGGGCTCATGAAGCCACACCCTTCTCAGGCAGCTATAGAGA  100

seq1  GTTATTAGTTTCTGGGATAAAGAGGGCCATATTCCTTAGTAGCATAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAGTTTCTGGGATAAAGAGGGCCATATTCCTTAGTAGCATAGTCA  150

seq1  CTGATAAGATGCCCTTACACAAGTAGGAATTGACCAGTCAGTCACAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGATGCCCTTACACAAGTAGGAATTGACCAGTCAGTCACAATTA  200

seq1  AATGAGGCAGGTCAAATACATACATACGAAGATATATATGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCAGGTCAAATACATACATACGAAGATATATATGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTGTGTG  270
      ||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTG  270