BAC Information

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BAC

Clone NameB6Ng01-065O23
Chromosome15 (Build37)
Map Location 73,866,592 - 74,009,553
singlet/doubletdoublet
Overlap geneEG666113, LOC100041307
Upstream gene1810044A24Rik, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
Downstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O23.bB6Ng01-065O23.g
ACCDH885264DH885265
length1,035774
definitionDH885264|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O23, 5' end.DH885265|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,866,592 - 73,867,629)(74,008,781 - 74,009,553)
sequence
gaattcaaattggaaacagtgttacaccatcaaccattgagatctgtaca
tagcttacagcaggtacttaccggtcaggttcctctactatgtaatgaac
tcttatgggtgtgcacaagctctgtgtaaagccgagcttggccagatatg
ctgtgtttatggcttaagtgtttcagacatagttaaagtattggcctgca
ctgatgtccacttgctctggaagtcgtgctttgggttcatctggtggcct
ggatttgggtccatatggactgtgggccagatgcttggggttcacatcaa
catctggccaaaggctgcatacgactccttgttgcctgtgtctcttcaac
acagccacacaatttatcagagccaatgttgaattctgctggcaagacca
atttgcaacattatataacataattgtttttgatggggtttctgtgattc
tctggtctccaccattatcctagagacggtgacagaaaatacacaggcca
gcacagggaggtaacaaaaggagtcaggctgtctagaggaagcataccta
gacagaaaccccctggggaggacttctgagttcacaagacgacagcctgg
gatatacagagccttggagagacttggctgggtccctgggggcccacgga
aatgcccagccaattctggagaagcagggagctcagtgcaagccaaggtg
tgtatgtatattaattgagggtgccttggagctcatgaggttgacactga
gaggtgctaatgtaagacagcactgctgttgcacgttggacatattgggt
gtggagaaccagcagggtgggttaggggagcaaagcctaggaagtgggtg
gagactgaagggtgtttttttaactcaatagatgaaatgataaggggtca
agagtgttcaaagcctgaccagaaccaagtgagagctatgggtgaggacc
catctgccatggtgaagctggagaacagaggaaagtctggggttgattgt
aagtcatgaagacactattgtgaggactaggatga
gaattcagatagtggattctctgtcctcatgtttatgaaaacatttttca
tttgacccttgattttaaaggcattgtgtctgggtacagatgtctgggct
gagatttaaagatggctggtctcattgtctccctgccccattgttcctgt
ggacaaatgaactgtgacttttgtttctgccgtccatgggaaacaccctt
gtccctgcttttaacggtggtacatagtggcttcgccactgtgtgctttg
tgttttcccattacctttcattttattgaatttctctgatcttaaatttc
acctatgattgatgtatatatgtgtgtctgatgcttgtgaggtcacacgt
gtgtggaagtcaaaggacagctttagagagtcagttcttcttcccatcgt
gcatttctgggatgcagcttgggccgtcaggcacctttgtgctccaagtc
acctcactggccctattttattggatttcttggcttaaaagattggcgtc
ttagacacagttgggaaacttctgctactgtgcgttaaagacagtttatc
tgcaccctttcctttgtctttttcagttgtgtgtgcgtgttcgatggttc
cctttgcccagacgagcagctctgctctctcatgtgctgtctgatgttgc
atgtcaactgacacacgctggagttagcgcagagaaaggagcctcccttt
gaggaagtgcctccatgagatccagctataaggcattttctcaataagtg
accaaggcgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73866592_73867629
seq2: B6Ng01-065O23.b_46_1080

seq1  GAATTCAAATTGGAAACAGTGTTACACCATCAACCATTGAGATCTGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGGAAACAGTGTTACACCATCAACCATTGAGATCTGTACA  50

seq1  TAGCTTACAGCAGGTACTTACCGGTCAGGTTCCTCTACTATGTAATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACAGCAGGTACTTACCGGTCAGGTTCCTCTACTATGTAATGAAC  100

seq1  TCTTATGGGTGTGCACAAGCTCTGTGTAAAGCCGAGCTTGGCCAGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGGTGTGCACAAGCTCTGTGTAAAGCCGAGCTTGGCCAGATATG  150

seq1  CTGTGTTTATGGCTTAAGTGTTTCAGACATAGTTAAAGTATTGGCCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTATGGCTTAAGTGTTTCAGACATAGTTAAAGTATTGGCCTGCA  200

seq1  CTGATGTCCACTTGCTCTGGAAGTCGTGCTTTGGGTTCATCTGGTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCACTTGCTCTGGAAGTCGTGCTTTGGGTTCATCTGGTGGCCT  250

seq1  GGATTTGGGTCCATATGGACTGTGGGCCAGATGCTTGGGGTTCACATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGGTCCATATGGACTGTGGGCCAGATGCTTGGGGTTCACATCAA  300

seq1  CATCTGGCCAAAGGCTGCATACGACTCCTTGTTGCCTGTGTCTCTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCCAAAGGCTGCATACGACTCCTTGTTGCCTGTGTCTCTTCAAC  350

seq1  ACAGCCACACAATTTATCAGAGCCAATGTTGAATTCTGCTGGCAAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACACAATTTATCAGAGCCAATGTTGAATTCTGCTGGCAAGACCA  400

seq1  ATTTGCAACATTATATAACATAATTGTTTTTGATGGGGTTTCTGTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAACATTATATAACATAATTGTTTTTGATGGGGTTTCTGTGATTC  450

seq1  TCTGGTCTCCACCATTATCCTAGAGACGGTGACAGAAAATACACAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCCACCATTATCCTAGAGACGGTGACAGAAAATACACAGGCCA  500

seq1  GCACAGGGAGGTAACAAAAGGAGTCAGGCTGTCTAGAGGAAGCATACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGAGGTAACAAAAGGAGTCAGGCTGTCTAGAGGAAGCATACCTA  550

seq1  GACAGAAACCCCCTGGGGAGGACTTCTGAGTTCACAAGACGACAGCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAACCCCCTGGGGAGGACTTCTGAGTTCACAAGACGACAGCCTGG  600

seq1  GATATACAGAGCCTTGGAGAGACTTGGCTGGGTCCCTGGGGGCCCACGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAGAGCCTTGGAGAGACTTGGCTGGGTCCCTGGGGGCCCACGGA  650

seq1  AATGCCCAGCCAATTCTGGAGAAGCAGGGAGCTCAGGTGCAAGCCAAGGT  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGCCCAGCCAATTCTGGAGAAGCAGGGAGCTCA-GTGCAAGCCAAGGT  699

seq1  GTGTATGTATATTAATTGAGGGTGCCTTGGAGCTCATGAGGTTGACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATATTAATTGAGGGTGCCTTGGAGCTCATGAGGTTGACACTG  749

seq1  AGAGGTGCTAATGTAAGACAGCACTGCTGTTGCACGTTGGACATATT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGGTGCTAATGTAAGACAGCACTGCTGTTGCACGTTGGACATATTGGG  799

seq1  TGTGGAGAACCAGCAGGGTGGGTTA-GGGAGC-AAGCCTAGGAAGTGGGT  847
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TGTGGAGAACCAGCAGGGTGGGTTAGGGGAGCAAAGCCTAGGAAGTGGGT  849

seq1  GGAGACTGAAGGGTG-TTTTTTAACTCAATAGATGAAATGATTAAGGGGT  896
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GGAGACTGAAGGGTGTTTTTTTAACTCAATAGATGAAATGA-TAAGGGGT  898

seq1  CCAAGAGTGTTCAAAGCCTGACCAGAACCAAGTGAGAGCTAAGGGGTGAG  946
       ||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  -CAAGAGTGTTCAAAGCCTGACCAGAACCAAGTGAGAGCT-ATGGGTGAG  946

seq1  GACCCATCTGCCATGGTGAGGCTGGAGAACAGAGGAAAGATCTGGGGGTG  996
      ||||||||||||||||||| ||||||||||||||||||| ||||||| ||
seq2  GACCCATCTGCCATGGTGAAGCTGGAGAACAGAGGAAAG-TCTGGGGTTG  995

seq1  ATTGTAAGTCATGGAGGACAGCTATGTTGAGGACTAGGATGA  1038
      |||||||||||| || |||| ||||  |||||||||||||||
seq2  ATTGTAAGTCAT-GAAGACA-CTATTGTGAGGACTAGGATGA  1035

seq1: chr15_74008781_74009553
seq2: B6Ng01-065O23.g_68_841 (reverse)

seq1  CCCCCCCCCCCCCCCCGCCTTGGTCACTTATTGAGAAAATGCCTTATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCGCCTTGGTCACTTATTGAGAAAATGCCTTATAGC  50

seq1  TGGATCTCATGGAGGCACTTCCTC-AAGGGAGGCTCCTTTCTCTGCGCTA  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGATCTCATGGAGGCACTTCCTCAAAGGGAGGCTCCTTTCTCTGCGCTA  100

seq1  ACTCCAGCGTGTGTCAGTTGACATGCAACATCAGACAGCACATGAGAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCGTGTGTCAGTTGACATGCAACATCAGACAGCACATGAGAGAG  150

seq1  CAGAGCTGCTCGTCTGGGCAAAGGGAACCATCGAACACGCACACACAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGCTCGTCTGGGCAAAGGGAACCATCGAACACGCACACACAACT  200

seq1  GAAAAAGACAAAGGAAAGGGTGCAGATAAACTGTCTTTAACGCACAGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGACAAAGGAAAGGGTGCAGATAAACTGTCTTTAACGCACAGTAG  250

seq1  CAGAAGTTTCCCAACTGTGTCTAAGACGCCAATCTTTTAAGCCAAGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTCCCAACTGTGTCTAAGACGCCAATCTTTTAAGCCAAGAAAT  300

seq1  CCAATAAAATAGGGCCAGTGAGGTGACTTGGAGCACAAAGGTGCCTGACG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAATAGGGCCAGTGAGGTGACTTGGAGCACAAAGGTGCCTGACG  350

seq1  GCCCAAGCTGCATCCCAGAAATGCACGATGGGAAGAAGAACTGACTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTGCATCCCAGAAATGCACGATGGGAAGAAGAACTGACTCTCT  400

seq1  AAAGCTGTCCTTTGACTTCCACACACGTGTGACCTCACAAGCATCAGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCCTTTGACTTCCACACACGTGTGACCTCACAAGCATCAGACA  450

seq1  CACATATATACATCAATCATAGGTGAAATTTAAGATCAGAGAAATTCAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATACATCAATCATAGGTGAAATTTAAGATCAGAGAAATTCAAT  500

seq1  AAAATGAAAGGTAATGGGAAAACACAAAGCACACAGTGGCGAAGCCACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGGTAATGGGAAAACACAAAGCACACAGTGGCGAAGCCACTA  550

seq1  TGTACCACCGTTAAAAGCAGGGACAAGGGTGTTTCCCATGGACGGCAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACCGTTAAAAGCAGGGACAAGGGTGTTTCCCATGGACGGCAGAA  600

seq1  ACAAAAGTCACAGTTCATTTGTCCACAGGAACAATGGGGCAGGGAGACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTCACAGTTCATTTGTCCACAGGAACAATGGGGCAGGGAGACAA  650

seq1  TGAGACCAGCCATCTTTAAATCTCAGCCCAGACATCTGTACCCAGACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAGCCATCTTTAAATCTCAGCCCAGACATCTGTACCCAGACACA  700

seq1  ATGCCTTTAAAATCAAGGGTCAAATGAAAAATGTTTTCATAAACATGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAAAATCAAGGGTCAAATGAAAAATGTTTTCATAAACATGAGG  750

seq1  ACAGAGAATCCACTATCTGAATTC  773
      ||||||||||||||||||||||||
seq2  ACAGAGAATCCACTATCTGAATTC  774