BAC Information

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BAC

Clone NameB6Ng01-066E09
Chromosome15 (Build37)
Map Location 48,651,578 - 48,652,654
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E09.bB6Ng01-066E09.g
ACCDH885493DH885494
length1,06671
definitionDH885493|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E09, 5' end.DH885494|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctcattaaggagactttaaagctaatcaaatagatgttagt
tgtacccaagatataagtgctattaattaatatttggaaatatattgtga
ggctggttcttgtgatagttcatggaatttacaggtgaataatactaatt
attgcatttcttcataggaagctttcatagcaccttgagatactgcaaga
actaatatacagggcaaaggcttacagcttctttttaatttgttaagatc
ctgagtctgaaatgtatgttttattcatcagttggatcttaccttcatgt
tctggaggcagactagggtgatagcaataaactatattgttttgagagtc
taggactccattaaacaatgacttaaagcatttgttttgttttgttttgt
tttccatgactggcactggcatatttgttaaagagtggcacatttgttaa
atggcttcaggtcactgaaaacattatgatatttgtctgaataaattcat
ctacagagtaccataatgaacttaaaattatgtttaattatgaaaaatat
gaaggtgtatgttttaaaaataatacatatgagcaaatagctttattgga
aaccatatgggaagaaacttgagttatcaacattttgaaactaaacaaaa
aatagaataaaatactgacagaacttattgcttgttttaattttaaaaaa
atgcttttagtttctgccaaatggcattttttctttatctaaagtaatta
tatgcactttaactatgagataatggattaattatattttaaaatatgat
gcttaagcattttgtctttttacaaatgcataaaagtaatgtcttcaagt
attttctaaagcttccaagtattcactttctaaatcattcactgaagatt
aaaagtacataaatataaacaacttttaaaacatttaaaatattatcatc
aaaatattgaatgggttatgaaggattaatacatgctgcaggatgttaac
ataagccaagtaagatgcaaaagagcttaatcctgaaggaaaatggaaat
gcctgtattcaggata
cataaccaggaagcaggagtgtgtgggttgatgagcagggggaagggaag
gggataggggacttttgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48651578_48652654
seq2: B6Ng01-066E09.b_46_1111 (reverse)

seq1  TATCTTGAATTACATGCATATTCCATTTTTCTTCTAGATTTTAAGCTCTT  50
      |||| |||| |||| |||| ||||||||| ||||  ||  |||||||| |
seq2  TATCCTGAA-TACAGGCAT-TTCCATTTTCCTTCAGGA--TTAAGCTC-T  45

seq1  TTTGCATCTATACTTTGCTTATGTTTACATTCCTGCAGCATGTATTAATT  100
      ||||||||| ||||| ||||||||| ||| |||||||||||||||||| |
seq2  TTTGCATCT-TACTTGGCTTATGTTAACA-TCCTGCAGCATGTATTAA-T  92

seq1  CCTTCATAACACATTCAATATTTTTGATGATAATATTTTTAAATGTTTTT  150
      |||||||||| ||||||||| |||||||||||||| ||||||||| ||||
seq2  CCTTCATAACCCATTCAATA-TTTTGATGATAATA-TTTTAAATG-TTTT  139

seq1  AAAAGTTGTTTATATTTATGTACTTTTAATCTTCAGTGAATGATTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTTTATATTTATGTACTTTTAATCTTCAGTGAATGATTTAGAA  189

seq1  AGTGAATACTTGGAAGCTTTAGAAAATACTTGAAGACATTACTTTTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATACTTGGAAGCTTTAGAAAATACTTGAAGACATTACTTTTATGC  239

seq1  ATTTGTAAAAAGACAAAATGCTTAAGCATCATATTTTAAAATATAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAAAAGACAAAATGCTTAAGCATCATATTTTAAAATATAATTAA  289

seq1  TCCATTATCTCATAGTTAAAGTGCATATAATTACTTTAGATAAAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCTCATAGTTAAAGTGCATATAATTACTTTAGATAAAGAAAAA  339

seq1  ATGCCATTTGGCAGAAACTAAAAGCATTTTTTTAAAATTAAAACAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTGGCAGAAACTAAAAGCATTTTTTTAAAATTAAAACAAGCAA  389

seq1  TAAGTTCTGTCAGTATTTTATTCTATTTTTTGTTTAGTTTCAAAATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTGTCAGTATTTTATTCTATTTTTTGTTTAGTTTCAAAATGTTG  439

seq1  ATAACTCAAGTTTCTTCCCATATGGTTTCCAATAAAGCTATTTGCTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAGTTTCTTCCCATATGGTTTCCAATAAAGCTATTTGCTCATA  489

seq1  TGTATTATTTTTAAAACATACACCTTCATATTTTTCATAATTAAACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTTTTAAAACATACACCTTCATATTTTTCATAATTAAACATAA  539

seq1  TTTTAAGTTCATTATGGTACTCTGTAGATGAATTTATTCAGACAAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTCATTATGGTACTCTGTAGATGAATTTATTCAGACAAATATC  589

seq1  ATAATGTTTTCAGTGACCTGAAGCCATTTAACAAATGTGCCACTCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTTCAGTGACCTGAAGCCATTTAACAAATGTGCCACTCTTTAA  639

seq1  CAAATATGCCAGTGCCAGTCATGGAAAACAAAACAAAACAAAACAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCCAGTGCCAGTCATGGAAAACAAAACAAAACAAAACAAATGC  689

seq1  TTTAAGTCATTGTTTAATGGAGTCCTAGACTCTCAAAACAATATAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCATTGTTTAATGGAGTCCTAGACTCTCAAAACAATATAGTTTA  739

seq1  TTGCTATCACCCTAGTCTGCCTCCAGAACATGAAGGTAAGATCCAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCACCCTAGTCTGCCTCCAGAACATGAAGGTAAGATCCAACTGA  789

seq1  TGAATAAAACATACATTTCAGACTCAGGATCTTAACAAATTAAAAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAACATACATTTCAGACTCAGGATCTTAACAAATTAAAAAGAAG  839

seq1  CTGTAAGCCTTTGCCCTGTATATTAGTTCTTGCAGTATCTCAAGGTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCCTTTGCCCTGTATATTAGTTCTTGCAGTATCTCAAGGTGCTA  889

seq1  TGAAAGCTTCCTATGAAGAAATGCAATAATTAGTATTATTCACCTGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTCCTATGAAGAAATGCAATAATTAGTATTATTCACCTGTAAA  939

seq1  TTCCATGAACTATCACAAGAACCAGCCTCACAATATATTTCCAAATATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAACTATCACAAGAACCAGCCTCACAATATATTTCCAAATATTA  989

seq1  ATTAATAGCACTTATATCTTGGGTACAACTAACATCTATTTGATTAGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGCACTTATATCTTGGGTACAACTAACATCTATTTGATTAGCTT  1039

seq1  TAAAGTCTCCTTAATGAGATGGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TAAAGTCTCCTTAATGAGATGGAATTC  1066