BAC Information

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BAC

Clone NameB6Ng01-066E11
Chromosome15 (Build37)
Map Location 6,079,252 - 6,114,277
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E11.bB6Ng01-066E11.g
ACCDH885497DH885498
length1,1691,113
definitionDH885497|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E11, 5' end.DH885498|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,079,252 - 6,080,459)(6,113,153 - 6,114,277)
sequence
gaattctttcctggatctcagacggtggtaaaaactgaagaaagaaaaag
aattcacacataaacaaattttatggctcataaaagtaaacacaggcact
cttccttccatatctcacaagatcacacccaatcagccacgagggtaaca
ggggtttatagtctaggtgttcaaatagacagaaacacaaatggtttagg
taaacatctggctagacatttcaaaagctatagaataggctcctcctcaa
aatacttaacaaatttacataaaacaacttccatcaccagcaaatcgtca
ttaaagtaaaatttacgaaggaaaaatgtaccagcaactatactatgtga
ctgttgctctctgggatgtgtcctgttctttctcacatctttatgtactt
accgctcttagaatatgaaagatgtatttcataaaaggacatctggctct
ccttaatatctaaattatcaaatttttatgcatctatgtcataccattgg
gtatttactttgaaacaggttcaagtaaagttcactttgatagaaagcca
tattgccttcatgcattaattagcatattctaatcttgaaagcactaaat
gaatcatcacttcggcttattagtcctttcagaactagccttgcaactgt
cttggcttgactttctttaatatctgaggcttattgtttccagctgtgac
acagcgttgatcctagggtaggtagagtgcgtcattataattctctaatg
tgtaacaaactccaacacttctgaagcttgccaatgactcccaaaagtag
cagaatggagaaataagatgagcactagaaagctgatgttcaaaagctca
gattcatacctacgactgtaacagtgttccaatctcaagagatatgactc
atttgatagagtcagttacagttttcaaccactaaatctatatagatctg
tatgtcccaaattgatgcatacacacactagtatataacatcagctagga
agaaaaaaaaaagttcaaatctagagccactatacaatgatagatacttt
tctcatcatgaaacgaatgcctacactcatgatgaggagtgttgacctca
cagttgagataagtaggcaaagaaatgaggtgcatctggctctctctcct
ctcctctctttgtttctct
gaattcaggacaagaaggtattttattaacaaatgacctagtcagtagca
ttttgctctagcaatggaaaatggacaaacaggtaaacaaataacaccag
aaacagaaaagaagatgctgagaggcccccattactgcaatgtacgcata
tagaaatgatggcagtatagaaagagacatgacacatgagatataagtcc
tagtacaagaaaggacaactatgacctgttattttaaaatcacattgaag
tcttttgaaacaaaggaaataaactcagattgctctgtcatgatgttgaa
taatgatgccattatggttaccctctgcttgcttagtaatttgtggaaat
ttgacatgacctcataaaaatgaacctccccctgtggtttcatattcaat
aacactgttagattattcatttgatctttcttaatatttattaaagaaca
atgtttaatgattgttttatttaaaaaatttcctttacatataaaaaatt
tcctttacatataaaatagttatagaaatagattttaaaaatttgatcaa
acttctctttttatttttagcttttcaggaaaaattagagtgcagagaaa
tcccatgtattcacatatagtgcttgttgataatacttgtagcaattaat
gagctgatagtcacatattgttagttaaaggccatatttcttgtttttat
ctaatttcctttccaatttttagaagtgcctatgtgtgaaggtacatatc
actaatgtgttcatgtgggtctctctctctctctctctctctctctctct
ctctgtgggtcatgactaatgttcagtaatatatcttgctcccaatcaaa
ttaatgtagctatttctaattttacataaaatctttgaagtgatttccat
atttacattttggttatttcctttatatcaactatctgactgatgctttt
gtgttacactaaaattttatcaagtactcttgggattcatggaacactat
aactaaaattgcatacattttctggaagttttttttcatgaatgaactga
atgcaacggttacaatggactcaggacaactttccagtttagaagactgg
ctaaatggagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_6079252_6080459
seq2: B6Ng01-066E11.b_47_1215

seq1  GAATTCTTTCCTGGATCTCAGACGGTGGTAAAAACTGAAGAAAGAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTGGATCTCAGACGGTGGTAAAAACTGAAGAAAGAAAAAG  50

seq1  AATTCACACATAAACAAATTTTATGGCTCATAAAAGTAAACACAGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACACATAAACAAATTTTATGGCTCATAAAAGTAAACACAGGCACT  100

seq1  CTTCCTTCCATATCTCACAAGATCACACCCAATCAGCCACGAGGGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCATATCTCACAAGATCACACCCAATCAGCCACGAGGGTAACA  150

seq1  GGGGTTTATAGTCTAGGTGTTCAAATAGACAGAAACACAAATGGTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTATAGTCTAGGTGTTCAAATAGACAGAAACACAAATGGTTTAGG  200

seq1  TAAACATCTGGCTAGACATTTCAAAAGCTATAGAATAGGCTCCTCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTGGCTAGACATTTCAAAAGCTATAGAATAGGCTCCTCCTCAA  250

seq1  AATACTTAACAAATTTACATAAAACAACTTCCATCACCAGCAAATCGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAACAAATTTACATAAAACAACTTCCATCACCAGCAAATCGTCA  300

seq1  TTAAAGTAAAATTTACGAAGGAAAAATGTACCAGCAACTATACTATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAAATTTACGAAGGAAAAATGTACCAGCAACTATACTATGTGA  350

seq1  CTGTTGCTCTCTGGGATGTGTCCTGTTCTTTCTCACATCTTTATGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTCTCTGGGATGTGTCCTGTTCTTTCTCACATCTTTATGTACTT  400

seq1  ACCGCTCTTAGAATATGAAAGATGTATTTCATAAAAGGACATCTGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTCTTAGAATATGAAAGATGTATTTCATAAAAGGACATCTGGCTCT  450

seq1  CCTTAATATCTAAATTATCAAATTTTTATGCATCTATGTCATACCATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATATCTAAATTATCAAATTTTTATGCATCTATGTCATACCATTGG  500

seq1  GTATTTACTTTGAAACAGGTTCAAGTAAAGTTCACTTTGATAGAAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTTTGAAACAGGTTCAAGTAAAGTTCACTTTGATAGAAAGCCA  550

seq1  TATTGCCTTCATGCATTAATTAGCATATTCTAATCTTGAAAGCACTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTTCATGCATTAATTAGCATATTCTAATCTTGAAAGCACTAAAT  600

seq1  GAATCATCACTTCGGCTTATTAGTCCTTTCAGAACTAGCCTTGCAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCACTTCGGCTTATTAGTCCTTTCAGAACTAGCCTTGCAACTGT  650

seq1  CTTGGCTTGACTTTCTTTAATATCTGAGGCTTATTGTTTCCAGCTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGACTTTCTTTAATATCTGAGGCTTATTGTTTCCAGCTGTGAC  700

seq1  ACAGCGTTGATCCTAGGGTAGGTAGAGTGCGTCATTATAATTCTCTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTTGATCCTAGGGTAGGTAGAGTGCGTCATTATAATTCTCTAATG  750

seq1  TGTAACAAACTCCAACACTTCTGAAGCTTGCCAATGACTCCCAAAAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAACTCCAACACTTCTGAAGCTTGCCAATGACTCCCAAAAGTAG  800

seq1  CAGAATGGAGAAATAAGATGAGCACTAGAAAGCTGATGTTCAAAAGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGAGAAATAAGATGAGCACTAGAAAGCTGATGTTCAAAAGCTCA  850

seq1  GATTCATACCTACGACTGTAACAGTGTTCCAATCTCAAGAGATATGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATACCTACGACTGTAACAGTGTTCCAATCTCAAGAGATATGACTC  900

seq1  ATTTGATAGAGTCAGTTACAGTTTTTCAACCACTAAATCTATATAGATCT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTGATAGAGTCAGTTACAG-TTTTCAACCACTAAATCTATATAGATCT  949

seq1  GTATGTTCCCAAATTGAATGCATACACACACTAGTATATAACATCAAGCT  1000
      ||||| |||||||||| |||||||||||||||||||||||||||| ||||
seq2  GTATG-TCCCAAATTG-ATGCATACACACACTAGTATATAACATC-AGCT  996

seq1  AGGAAAGAAAAAAAAAAAGATCAAAATCTCAGAGCCACTATACAAGTATT  1050
      |||||   ||||||||||| || |||||| ||||||||||||||| |  |
seq2  AGGAA--GAAAAAAAAAAGTTC-AAATCT-AGAGCCACTATACAA-TGAT  1041

seq1  AGATACTTTTCTCATCATTGAAACAGAATGCCTAACAACATCATGATGAG  1100
      ||||||||||||||||| |||||| |||||||| |||   ||||||||||
seq2  AGATACTTTTCTCATCA-TGAAAC-GAATGCCT-ACA--CTCATGATGAG  1086

seq1  GGAAGGTTGGTTTTGA-CTCACAGTTTGAGGATAAAGTAGGGCAAGAGGA  1149
      |        || |||| ||||||| |||| ||| |||||||  ||||   
seq2  G-------AGTGTTGACCTCACAG-TTGA-GAT-AAGTAGGCAAAGA---  1123

seq1  GAATGAGGTAGCATCTCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1199
       |||||||| ||||||  ||||||||||         ||||| |||||| 
seq2  -AATGAGGT-GCATCT-GGCTCTCTCTC---------CTCTC-CTCTCTT  1160

seq1  TCTTTCTCT  1208
      | |||||||
seq2  TGTTTCTCT  1169

seq1: chr15_6113153_6114277
seq2: B6Ng01-066E11.g_67_1179 (reverse)

seq1  TATCTCACATTTATGCAAGTCTTCCTAAACTGGAAAGTTGTTCTTGAGTC  50
      |||||| |||||| || |||||| |||||||||||||||| || ||||||
seq2  TATCTC-CATTTA-GCCAGTCTT-CTAAACTGGAAAGTTG-TCCTGAGTC  46

seq1  CATTGTAACTGTTTGCATCTCAGTTCATCTCATGGAAAAAAAACTTCCAG  100
      ||||||||| | |||||| ||||||||| |||| ||||||||||||||||
seq2  CATTGTAACCG-TTGCAT-TCAGTTCAT-TCAT-GAAAAAAAACTTCCAG  92

seq1  -AAATGTAATGCAATTTTTAGTTATAAGTGTTCCATGAATCCACAAGAGT  149
       |||||| |||||| |||||||||| |||||||||||||||| |||||||
seq2  AAAATGT-ATGCAA-TTTTAGTTAT-AGTGTTCCATGAATCC-CAAGAGT  138

seq1  ACTTGATACAAATTTTAGTGTTAACACAAAAGCATCAGTCAGATAGTTGA  199
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTGATA-AAATTTTAGTG-TAACACAAAAGCATCAGTCAGATAGTTGA  186

seq1  TATAAAGGAAATAACCAAAATGTAAATATGGAAATCACTTCAAAGA-TTT  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATAAAGGAAATAACCAAAATGTAAATATGGAAATCACTTCAAAGATTTT  236

seq1  ATGTAAAATTAGAAATAGCTACATTAATTTGATTGGGAGCAAGATATATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATTAGAAATAGCTACATTAATTTGATTGGGAGCAAGATATATT  286

seq1  ACTGAACATTAGTCATGACCCACAGAGAGAGAGAGAGAGAGAGAGAGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATTAGTCATGACCCACAGAGAGAGAGAGAGAGAGAGAGAGAGA  336

seq1  GAGAGAGACCCACATGAACACATTAGTGATATGTACCTTCACACATAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCCACATGAACACATTAGTGATATGTACCTTCACACATAGGC  386

seq1  ACTTCTAAAAATTGGAAAGGAAATTAGATAAAAACAAGAAATATGGCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAAAATTGGAAAGGAAATTAGATAAAAACAAGAAATATGGCCTT  436

seq1  TAACTAACAATATGTGACTATCAGCTCATTAATTGCTACAAGTATTATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACAATATGTGACTATCAGCTCATTAATTGCTACAAGTATTATCA  486

seq1  ACAAGCACTATATGTGAATACATGGGATTTCTCTGCACTCTAATTTTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACTATATGTGAATACATGGGATTTCTCTGCACTCTAATTTTTCC  536

seq1  TGAAAAGCTAAAAATAAAAAGAGAAGTTTGATCAAATTTTTAAAATCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCTAAAAATAAAAAGAGAAGTTTGATCAAATTTTTAAAATCTAT  586

seq1  TTCTATAACTATTTTATATGTAAAGGAAATTTTTTATATGTAAAGGAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAACTATTTTATATGTAAAGGAAATTTTTTATATGTAAAGGAAAT  636

seq1  TTTTTAAATAAAACAATCATTAAACATTGTTCTTTAATAAATATTAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATAAAACAATCATTAAACATTGTTCTTTAATAAATATTAAGAA  686

seq1  AGATCAAATGAATAATCTAACAGTGTTATTGAATATGAAACCACAGGGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAATGAATAATCTAACAGTGTTATTGAATATGAAACCACAGGGGG  736

seq1  AGGTTCATTTTTATGAGGTCATGTCAAATTTCCACAAATTACTAAGCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATTTTTATGAGGTCATGTCAAATTTCCACAAATTACTAAGCAAG  786

seq1  CAGAGGGTAACCATAATGGCATCATTATTCAACATCATGACAGAGCAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTAACCATAATGGCATCATTATTCAACATCATGACAGAGCAATC  836

seq1  TGAGTTTATTTCCTTTGTTTCAAAAGACTTCAATGTGATTTTAAAATAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATTTCCTTTGTTTCAAAAGACTTCAATGTGATTTTAAAATAAC  886

seq1  AGGTCATAGTTGTCCTTTCTTGTACTAGGACTTATATCTCATGTGTCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATAGTTGTCCTTTCTTGTACTAGGACTTATATCTCATGTGTCATG  936

seq1  TCTCTTTCTATACTGCCATCATTTCTATATGCGTACATTGCAGTAATGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTATACTGCCATCATTTCTATATGCGTACATTGCAGTAATGGG  986

seq1  GGCCTCTCAGCATCTTCTTTTCTGTTTCTGGTGTTATTTGTTTACCTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCAGCATCTTCTTTTCTGTTTCTGGTGTTATTTGTTTACCTGTT  1036

seq1  TGTCCATTTTCCATTGCTAGAGCAAAATGCTACTGACTAGGTCATTTGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTTCCATTGCTAGAGCAAAATGCTACTGACTAGGTCATTTGTT  1086

seq1  AATAAAATACCTTCTTGTCCTGAATTC  1125
      |||||||||||||||||||||||||||
seq2  AATAAAATACCTTCTTGTCCTGAATTC  1113