BAC Information

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BAC

Clone NameB6Ng01-067C20
Chromosome15 (Build37)
Map Location 89,667,489 - 89,792,429
singlet/doubletdoublet
Overlap geneSyt10
Upstream genePim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C20.bB6Ng01-067C20.g
ACCDH886146DH886147
length1,1401,123
definitionDH886146|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C20, 5' end.DH886147|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,667,489 - 89,668,648)(89,791,406 - 89,792,429)
sequence
gaattcaacattatgtgcatttaatacactgaattcctttcacttaggtg
ggagagatggttcagtagataagagcacagattgtccctctagaaggccc
agtttcagtttccagcacccatgtggcagctgaccgccatttgtaattcc
aattccagggaatctgacgtcttctggtctttgtgggtacttcccataca
cagtgccaagacatacatgcaggaaaaatagccatacacataaaataaaa
taaaataattttaataatcttttacatgaactcattgttaatatgaatca
atcctatttagactacaacatggatcaacaaagagttgcacacacttcgg
tgcacataaatgcgtatgttcaagtatgacaaatgtataacctgtgttcc
atttgcgtggtaggaaactaacctaaagaaaggctcgaggtttgagttaa
ttgtaactggaaaaatcttgttgctaccttctcatatgttgcagcctctg
gtttatagttaaaattccatgtttaccaggatttcctggaacagctagga
tttaagaagcctgaggcccttaagtgtatccatcagcaactatttgtgac
ttgtgatgaaagtgtaagccattttgtttgcttttgttttcatatctgca
aaacaatggctcctggttaagctagaataactaataagagttttaatggt
aagttttttgttttttgtttttttttttatcacatcaagtactttttcct
taagcaaagtcacatgctttctattgctactggggtcattaaagaagcca
tcttgttcatggagcaaatgatctatcaagtttctagtatgcctccatct
agtatgctggatgcttccagcactgggggatgtaagaggagacaaagctc
ggccttcaaagatataatattctagtgacttaaagtgcacgtgaatcata
tcaatgtagatctggagagtcttgtgtgccgtcaaatagagacaattgca
ctgagtggctctgatcatgcctcgttactttataatgggacagagatagg
agaaccatatttgattggtatgatgacttttctaagtagaaaaatgggta
tcgtctctggtgatgctgctgcagcgtgagtcatggtgcg
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctgtatctttgttgaat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaaatctgcactaaacccgtctg
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggtgatattgaagaataaagataaaaaaattactgaactcttcctc
accccagagcccgacccctcccatctagagattgttcccagaacactcct
gaactcttcaccccagaatgcattcctgaactcttcaccccagaatgcat
tcctgaactcctcaccctagagttcgaaccctcccaactaaagactgttc
caagaacatttttgagataagggcctcctggaacaacctcagaatgaacc
gggtacattgccaaataataggacatgaccccttagttacgtagaattcc
cttggcagaaccccttgtcccttggcagaaccccttagttatgcaaactt
gtactttccctgccccactctccccccttgagtttttcccaaataagcct
gtgaaaaatttggctcgaggtcgattctcctctacaccatactagtgcat
gagtttcgacccagagctctggtctatgtgctttcttgctgttgcttata
aatctgctcaacatttgagttcagctcagtgtctcttgggtccgcgctgt
ccaagcctgatgaagtctccttcgggtcttcaatgggactgttagattgc
aactgactgaaccaacttggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89667489_89668648
seq2: B6Ng01-067C20.b_46_1185

seq1  GAATTCAACATTATGTGCATTTAATACACTGAATTCCTTTCACTTAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATTATGTGCATTTAATACACTGAATTCCTTTCACTTAGGTG  50

seq1  GGAGAGATGGTTCAGTAGATAAGAGCACAGATTGTCCCTCTAGAAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGTTCAGTAGATAAGAGCACAGATTGTCCCTCTAGAAGGCCC  100

seq1  AGTTTCAGTTTCCAGCACCCATGTGGCAGCTGACCGCCATTTGTAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTTTCCAGCACCCATGTGGCAGCTGACCGCCATTTGTAATTCC  150

seq1  AATTCCAGGGAATCTGACGTCTTCTGGTCTTTGTGGGTACTTCCCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGGAATCTGACGTCTTCTGGTCTTTGTGGGTACTTCCCATACA  200

seq1  CAGTGCCAAGACATACATGCAGGAAAAATAGCCATACACATAAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAAGACATACATGCAGGAAAAATAGCCATACACATAAAATAAAA  250

seq1  TAAAATAATTTTAATAATCTTTTACATGAACTCATTGTTAATATGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTTAATAATCTTTTACATGAACTCATTGTTAATATGAATCA  300

seq1  ATCCTATTTAGACTACAACATGGATCAACAAAGAGTTGCACACACTTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTAGACTACAACATGGATCAACAAAGAGTTGCACACACTTCGG  350

seq1  TGCACATAAATGCGTATGTTCAAGTATGACAAATGTATAACCTGTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAATGCGTATGTTCAAGTATGACAAATGTATAACCTGTGTTCC  400

seq1  ATTTGCGTGGTAGGAAACTAACCTAAAGAAAGGCTCGAGGTTTGAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGTGGTAGGAAACTAACCTAAAGAAAGGCTCGAGGTTTGAGTTAA  450

seq1  TTGTAACTGGAAAAATCTTGTTGCTACCTTCTCATATGTTGCAGCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTGGAAAAATCTTGTTGCTACCTTCTCATATGTTGCAGCCTCTG  500

seq1  GTTTATAGTTAAAATTCCATGTTTACCAGGATTTCCTGGAACAGCTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGTTAAAATTCCATGTTTACCAGGATTTCCTGGAACAGCTAGGA  550

seq1  TTTAAGAAGCCTGAGGCCCTTAAGTGTATCCATCAGCAACTATTTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGCCTGAGGCCCTTAAGTGTATCCATCAGCAACTATTTGTGAC  600

seq1  TTGTGATGAAAGTGTAAGCCATTTTGTTTGCTTTTGTTTTCATATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGAAAGTGTAAGCCATTTTGTTTGCTTTTGTTTTCATATCTGCA  650

seq1  AAACAATGGCTCCTGGTTAAGCTAGAATAACTAATAAGAGTTTTAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGGCTCCTGGTTAAGCTAGAATAACTAATAAGAGTTTTAATGGT  700

seq1  AAGTTTTTTGTTTTTTGTTTTTTTTTTTATCACATCAAGTACTTTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTGTTTTTTGTTTTTTTTTTTATCACATCAAGTACTTTTTCCT  750

seq1  TAAGCAAAGTCACATGCTTTCTATTGCTACTGGGGTCATTAAAGAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGTCACATGCTTTCTATTGCTACTGGGGTCATTAAAGAAGCCA  800

seq1  TCTTGTTCATGGAGCAAATGATCTATCAAGTTTCTAGTATGCCTCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCATGGAGCAAATGATCTATCAAGTTTCTAGTATGCCTCCATCT  850

seq1  AGTATGCTGGATGCTTCCAGCACT-GGGGATGTAAGAGGAGACAAAGCTC  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTATGCTGGATGCTTCCAGCACTGGGGGATGTAAGAGGAGACAAAGCTC  900

seq1  GGCCTTCAAAGATATAATATTCTAGTGACTTAAAGTGCACGTGAATCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAAAGATATAATATTCTAGTGACTTAAAGTGCACGTGAATCATA  950

seq1  TCAATGTAGATCTGGAGAGTCCTTGTTGTGCCGTCAAAATAGAGACAATT  999
      |||||||||||||||||||| |||| ||||||||| ||||||||||||||
seq2  TCAATGTAGATCTGGAGAGT-CTTG-TGTGCCGTC-AAATAGAGACAATT  997

seq1  GCCACTGAGTGGCTCTGATTCATGCCTCGTTTTACTTTATAATGGGACAA  1049
      | |||||||||||||||| ||||||||||  ||||||||||||||||| |
seq2  G-CACTGAGTGGCTCTGA-TCATGCCTCG--TTACTTTATAATGGGAC-A  1042

seq1  GAGATAAGGTAGAAACCATATTTTGAATTTGGTATGATGACCTTTTCTTA  1099
      ||||||  | || ||||||| |||||  |||||||||||| |||||| ||
seq2  GAGATA--GGAG-AACCATA-TTTGA--TTGGTATGATGA-CTTTTC-TA  1084

seq1  AGTTAGAAATATTGGTATCGTCTTCTTGTGATGCTTGGCTGCAAGCTGAA  1149
      || |||||| || ||||||||| ||| ||||||||  ||||| |||   |
seq2  AG-TAGAAAAATGGGTATCGTC-TCTGGTGATGCT--GCTGC-AGCGTGA  1129

seq1  GTCATGGTGCG  1160
      |||||||||||
seq2  GTCATGGTGCG  1140

seq1: chr15_89791406_89792429
seq2: B6Ng01-067C20.g_195_1191 (reverse)

seq1  GTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCATATT  50
      ||||| ||||||  ||||  || ||||| | |||| |||||||||  |||
seq2  GTACC-AAGTTGGTTCAG--TC-AGTTG-CAATCT-AACAGTCCC--ATT  42

seq1  GAAAGACCCCCGAAGGGAGACCCTCACTCAAGCCTTGGGACAGCCGCGGA  100
      | ||||  |||||| ||||| | ||| ||| ||  | |||||| ||||||
seq2  G-AAGA--CCCGAA-GGAGA-CTTCA-TCAGGC--TTGGACAG-CGCGGA  83

seq1  CCCAAGAAGACACTGAGACTGAACTCAAAATGTTGAAGGCAAGATTTAAT  150
      |||||| |||||||||| |||||||| |||||||||  || |||||||  
seq2  CCCAAG-AGACACTGAG-CTGAACTC-AAATGTTGA--GC-AGATTTA--  125

seq1  AAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACTCA  200
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCT-GGGTCGAAACTCA  174

seq1  TGCACCTAGTATGGTGTAGAGGAGAATCGACCTCGAGCCAAATTTTTCAC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-CTAGTATGGTGTAGAGGAGAATCGACCTCGAGCCAAATTTTTCAC  223

seq1  AGGCTTATATAGGAAAAACTCAAGGGGGGAGAGTGGGGCAGGGAAAGTAC  300
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATTTGGGAAAAACTCAAGGGGGGAGAGTGGGGCAGGGAAAGTAC  273

seq1  AAGTTTGCATAACTAAGGGGTTCTGCCAAGGGACAAGGGGTTCTGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCATAACTAAGGGGTTCTGCCAAGGGACAAGGGGTTCTGCCAAG  323

seq1  GGAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCC  373

seq1  GGTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTG  423

seq1  GAACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGA  473

seq1  ATGCATTCTGGGGTGAAGAGTTCAGGAATGCATTCTGGGGTGAAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCTGGGGTGAAGAGTTCAGGAATGCATTCTGGGGTGAAGAGTTC  523

seq1  AGGAGTGTTCTGGGAACAATCTCTAGATGGGAGGGGTCGGGCTCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCTGGGAACAATCTCTAGATGGGAGGGGTCGGGCTCTGGGGT  573

seq1  GAGGAAGAGTTCAGTAATTTTTTTATCTTTATTCTTCAATATCACCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGTTCAGTAATTTTTTTATCTTTATTCTTCAATATCACCTAAA  623

seq1  GAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAAGCCCAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAAGCCCAGGAC  673

seq1  CAGACGGGTTTAGTGCAGATTTCTATCAGACCTTCAAAGAAGATCTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGGTTTAGTGCAGATTTCTATCAGACCTTCAAAGAAGATCTAATT  723

seq1  CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  773

seq1  CAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG  823

seq1  ATTCAACAAAGATACAGAACTTCAGACCAATTTCTCTTATGAATATCGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAAGATACAGAACTTCAGACCAATTTCTCTTATGAATATCGAT  873

seq1  GCAAAAATCCTCAATAAAATTCTTGCTAACTGAATCCAAGAACACATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCCTCAATAAAATTCTTGCTAACTGAATCCAAGAACACATTAA  923

seq1  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGGGAT  973

seq1  GGTTTAATATACGAAAATCCATCA  1024
      ||||||||||||||||||||||||
seq2  GGTTTAATATACGAAAATCCATCA  997