BAC Information

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BAC

Clone NameB6Ng01-070D19
Chromosome15 (Build37)5 (Build37)
Map Location 92,472,736 - 92,473,877138,110,427 - 138,111,607
singlet/doubletsingletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D19.bB6Ng01-070D19.g
ACCDH888301DH888302
length1,1741,187
definitionDH888301|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D19, 5' end.DH888302|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,472,736 - 92,473,877)(138,110,427 - 138,111,607)
sequence
gaattccacgaacatcactgcgtcctcgagaaaccctatctcaacaccaa
atgaagtcatccctacctctcgatcctgctcaggaccaaaacaagcactc
ctggaaaacactaaggagggaaaaatacgttccaatgaccagtggaccct
gggcacctgtattccaggataagaaaccttggcttttgctgatggacatg
aacgagaaggatcgggaacataaatggaaatggagagattgatcatatgg
agacttgtgattgggcttgaattgttcaccttaggaagaaacggcttcct
cctgaggtagaggtgatgatgattcttcaggaaatggaagtagacatctg
ggtgcctctctattttccggcccttaaaatcccttatagcaacctagggc
agatcctggatagttatatgacaaatatccattcacttttcattgtgtat
tctaatttctacgagggctgaaaaaatcctgaatctacttctgcccaaga
aatcgggtgggggtggaggttcactagctgccaagcatgactacggaaga
gagagccaggagaaataacttaaattaaagcagcagcagcaggtctcaga
gttgaatggcagtcaggatgatgaggatgattgacactgacttcactcaa
ggcttctcaacacccaagttctctgccaccaagaacaatgcctccttcct
ggggaggagacgagatacaaggaggcacaacacgagaagtcaagaagact
catttacgacttcagaaagtacagacacggacaagtcctcaatcaaagca
tcttatattaaaggatgggaggcgtgaagggatgccacgacttagtcgag
cacaacagaagacgcttgtccacccttagaacgattcatttgatccatca
agctttcatctctgctgctcagtgtaatgggcatcacctatccatgatta
tgaaaacagataaaatggaatagtgtcctagacatgacaagaccattctt
tctctgtagtacatatttctgcaggtcagtctgcgtatctacgctcgttg
tacactgggtgagagcccttctctctcaaacctagaatagagtaatttgg
gttgtcacaacttcttttcttacaatattgcatcgctactaagaacctgt
tagaatagcagctatgcacccccc
gaattcttccctggttgaactctaagccatggagccttctctccagccgc
ttatcttcattcatttattttttgagacaggtgctcatattcctggctgg
ccttgaactcgctatatagcccacgatggcctcctccacctccccatatc
tttggtcattggtatctaccacgccacctggtttatacagagctggagac
gaaccctttggggaatgtaaacatcctaccaactaaactatggtctgagg
ccctacctggtatttcaaagccaaaggtgcctcgatattgcagactttct
tgcgtgcctctgtggtcttttacttcctggtggaatttctttgttttggc
ggggctgcctttgttgtaagatgagggcaatgctctagactggagtaaga
tttaaagaacaaagcaaggaagacctgggggctggtgagatggttcactg
ggtgagggcacttagacctacggtgggaggagagactggagtcctgcagg
ttgtcctctgacttccactcgtgcgtgggccatgaagtgtgcacacgatg
aataattaaatagatacatttaacttcagaagggaaaagggggctggaga
gatggcacagcggttaagagctctggctgctcttccggaggtcctaagtt
caattcctagcaattacatggtggctcacaatgatctgtaatgggatcca
atgccctcctctggtgtgtctgaagacggccacagtgtactcacatataa
taaataaagcttaaagaaaagaaaggggaaaccatgaagtgctcacctag
ctgagcctctggtttccccattagaacctcagaagggcaagtggataggt
aagaaacctttctgttctaatgaaatccccacacgcggtctgtggacaga
cctggctctccggggagctaacggacagcatgagaacatggctgtggccc
gtctttccatctcatggctgaacttttaaatttcttcctgctttgttaaa
gctcttcggagagggacgcctgggattttttttgttcagaaatgactgct
gaagggggtgggctgtcaattcttcccacagctccatcttctggctaagg
agcaaagcagctggcttttcgcaataccaccctcttctgaaccagacgtt
ctcggtactgtcagcacaattcgtaagggttcttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92472736_92473877
seq2: B6Ng01-070D19.b_93_1216

seq1  ATGAAGTCATCCCTACCTCTCCCACATTTCTCCAAACAAAAACAAGCACT  50
      |||||||||||||||||||| | |   | |||   || ||||||||||||
seq2  ATGAAGTCATCCCTACCTCT-CGATCCTGCTCAGGACCAAAACAAGCACT  49

seq1  CATGGAAAATATTAAGTTGTGAAAAATACATTCCAATGATGAGTGTCACA  100
      | ||||||| | ||||  | ||||||||| |||||||||  ||||  || 
seq2  CCTGGAAAACACTAAGGAGGGAAAAATACGTTCCAATGACCAGTG-GACC  98

seq1  GTTAACACATATATTCCAGGATAAGAAACAATGGCTTTTGCTGATGGACA  150
       |   ||| | ||||||||||||||||||  |||||||||||||||||||
seq2  CTGGGCACCTGTATTCCAGGATAAGAAACCTTGGCTTTTGCTGATGGACA  148

seq1  TGAAGGAGATGGATAGGGAACATAGCAAAAAAGGGAGAGATTGATCATAT  200
      |||| |||| |||| |||||||||     ||| |||||||||||||||||
seq2  TGAACGAGAAGGATCGGGAACATAAATGGAAATGGAGAGATTGATCATAT  198

seq1  CCTGACTTGAATTTGGGCTTGAATTATTCACCTAAGGAAGAAGCGGCTTC  250
         ||||||   ||||||||||||| ||||||| |||||||| |||||||
seq2  GGAGACTTGTGATTGGGCTTGAATTGTTCACCTTAGGAAGAAACGGCTTC  248

seq1  CTCCTGAGGTAGAGGTGATGATAATTCTTCAGGAAATGGAAGTAGACATC  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCCTGAGGTAGAGGTGATGATGATTCTTCAGGAAATGGAAGTAGACATC  298

seq1  ACAGTGCCTCTCTTTTTTCCTGTTTTTAAAATCCCTTAGAGCAGCAGTGG  350
         |||||||||| |||||| |   ||||||||||||| |||| |   ||
seq2  TGGGTGCCTCTCTATTTTCCGGCCCTTAAAATCCCTTATAGCAACCTAGG  348

seq1  GCAGAGTCATGATAGTTATATGACAAATATCCATTCACTTTTCATTGTGT  400
      |||||  |  ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCTGGATAGTTATATGACAAATATCCATTCACTTTTCATTGTGT  398

seq1  ATTCGAATTTCTACGAGGGCTGAAAAAATACTGAATCTACTTCTGCCCAA  450
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCTAATTTCTACGAGGGCTGAAAAAATCCTGAATCTACTTCTGCCCAA  448

seq1  GAAATCGTTTTATCAAGTAGGTTCACTAGCTGCCAAGCATGACTACGGAA  500
      |||||||  |      | ||||||||||||||||||||||||||||||||
seq2  GAAATCGGGTGGGGGTGGAGGTTCACTAGCTGCCAAGCATGACTACGGAA  498

seq1  GAGAGAGCCAGGAGAAATAACTTAAATTAAAGCAGCAGCAGCAGGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCCAGGAGAAATAACTTAAATTAAAGCAGCAGCAGCAGGTCTCA  548

seq1  GAGTTGAATGGCAGTCAGGATGATGAGGATGATTGACACTGACTTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAATGGCAGTCAGGATGATGAGGATGATTGACACTGACTTCACTC  598

seq1  AAGGCTTCTCAACACCCAAGTTCTCTGCCACCAAGAACAATGCCTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCTCAACACCCAAGTTCTCTGCCACCAAGAACAATGCCTCCTTC  648

seq1  CTGGGGAGGAGACGAGATACAAGGAGGCACAACACGAGAAGTCAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGGAGACGAGATACAAGGAGGCACAACACGAGAAGTCAAGAAGA  698

seq1  CTCATTTACGACTTCAGAAAGTACAGACACGGACAAGTCCTCAATCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTACGACTTCAGAAAGTACAGACACGGACAAGTCCTCAATCAAAG  748

seq1  CATCTTATATTAAAGGATGGGAGGCGTGAAGGGATGCCACGACTTAGTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATATTAAAGGATGGGAGGCGTGAAGGGATGCCACGACTTAGTCG  798

seq1  AGCACAACAGAAGACGCTTGTCCACCCTTAGAACGATTCATTTGATCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAACAGAAGACGCTTGTCCACCCTTAGAACGATTCATTTGATCCAT  848

seq1  CAAGCTTTCATCTCTGCTGCTCAGTGTAAATGGGCATCACCTATCCATGA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAGCTTTCATCTCTGCTGCTCAGTGT-AATGGGCATCACCTATCCATGA  897

seq1  TTATGAAAACAGATAAAAATGGAATAGTGTCCTAGACATGAACAAAGACC  950
      |||||||||||||| ||||||||||||||||||||||||||   ||||||
seq2  TTATGAAAACAGAT-AAAATGGAATAGTGTCCTAGACATGA--CAAGACC  944

seq1  ATTCTTTCTCTGTAGTTACATAATTTCTGCAGGTCAAGTCTGCGTATTCT  1000
      ||||||||||||||| ||||| ||||||||||||| |||||||||| |||
seq2  ATTCTTTCTCTGTAG-TACAT-ATTTCTGCAGGTC-AGTCTGCGTA-TCT  990

seq1  ACGCTCGTTGTACACTGGTGCAGAGCCCCTTCTCTCTCAACACTAGGATT  1050
      ||||||||||||||||||   |||| ||||||||||||||  ||| || |
seq2  ACGCTCGTTGTACACTGGGTGAGAG-CCCTTCTCTCTCAAACCTA-GAAT  1038

seq1  AGAAGTAATTTTGGGTATGTCAACAACTTCTTTTCTTACAATAGTGGCAT  1100
      || ||||| ||||||| |||| ||||||||||||||||||||| | ||||
seq2  AG-AGTAA-TTTGGGT-TGTC-ACAACTTCTTTTCTTACAATA-TTGCAT  1083

seq1  CGGCTACTAGGCACCTGTTAAGATAGCAGCTAGCCACCCCCC  1142
      | ||||||| | ||||||||  ||||||||||  ||||||||
seq2  C-GCTACTAAGAACCTGTTAGAATAGCAGCTATGCACCCCCC  1124

seq1: chr5_138110427_138111607
seq2: B6Ng01-070D19.g_77_1251 (reverse)

seq1  GAAAAGGGACCCTTGACGAATGCTGCTGACAGTACCGAGAGAAGGCTGTG  50
      ||||| | |||||| ||||||  ||||||||||||||||| | | |||  
seq2  GAAAA-GAACCCTT-ACGAATTGTGCTGACAGTACCGAGA-ACGTCTGGT  47

seq1  TC-GAGAAGGGTGGGTATGCG-AAAGCCAGCTGCCTTGCTCCCTTAG-CA  97
      || ||  |||||||   |||| |||||||||||| ||||| |||||| ||
seq2  TCAGAAGAGGGTGGTATTGCGAAAAGCCAGCTGCTTTGCT-CCTTAGCCA  96

seq1  GAAGAATGGAGCTGTGGGAAGAATGGACAGCCCACCCCCTTCAGGCAGTC  147
      |||| ||||||||||||||||||| |||||||||||||||||| ||||||
seq2  GAAG-ATGGAGCTGTGGGAAGAATTGACAGCCCACCCCCTTCA-GCAGTC  144

seq1  ATATCTGGAACAGAAACATCCCAGGCGTCCCTCTTCCGAGAGCTTTTAAC  197
      || |||| |  | ||| ||||||||||||||||| |  ||||| ||||||
seq2  ATTTCTGAACAAAAAAAATCCCAGGCGTCCCTCTCCGAAGAGC-TTTAAC  193

seq1  AAAGCAGGAAGAAATTTAAAAGTTCAGCCATGAGATGGAAAGACGGGCCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGAAGAAATTTAAAAGTTCAGCCATGAGATGGAAAGACGGGCCA  243

seq1  CAGCCATGTTCTCATGCCTGTTCCGTTAGCTCCCCGGAGAGCCAGGTCTG  297
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CAGCCATGTTCTCATG-CTG-TCCGTTAGCTCCCCGGAGAGCCAGGTCTG  291

seq1  TCCACAGACCGCGTGTGGGGATTTCATTAGAACAGAAAGGTTTCTTACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGACCGCGTGTGGGGATTTCATTAGAACAGAAAGGTTTCTTACCT  341

seq1  ATCCACTTGCCCTTCTGAGGTTCTAATGGGGAAACCAGAGGCTCAGCTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTGCCCTTCTGAGGTTCTAATGGGGAAACCAGAGGCTCAGCTAG  391

seq1  GTGAGCACTTCATGGTTTCCCCTTTCTTTTCTTTAAGCTTTATTTATTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACTTCATGGTTTCCCCTTTCTTTTCTTTAAGCTTTATTTATTAT  441

seq1  ATGTGAGTACACTGTGGCCGTCTTCAGACACACCAGAGGAGGGCATTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTACACTGTGGCCGTCTTCAGACACACCAGAGGAGGGCATTGGA  491

seq1  TCCCATTACAGATCATTGTGAGCCACCATGTAATTGCTAGGAATTGAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACAGATCATTGTGAGCCACCATGTAATTGCTAGGAATTGAACT  541

seq1  TAGGACCTCCGGAAGAGCAGCCAGAGCTCTTAACCGCTGTGCCATCTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTCCGGAAGAGCAGCCAGAGCTCTTAACCGCTGTGCCATCTCTC  591

seq1  CAGCCCCCTTTTCCCTTCTGAAGTTAAATGTATCTATTTAATTATTCATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTTTTCCCTTCTGAAGTTAAATGTATCTATTTAATTATTCATC  641

seq1  GTGTGCACACTTCATGGCCCACGCACGAGTGGAAGTCAGAGGACAACCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACACTTCATGGCCCACGCACGAGTGGAAGTCAGAGGACAACCTG  691

seq1  CAGGACTCCAGTCTCTCCTCCCACCGTAGGTCTAAGTGCCCTCACCCACT  747
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGACTCCAGTCTCTCCTCCCACCGTAGGTCTAAGTGCCCTCACCCAGT  741

seq1  GAACCATCTCACCAGCCCCCAGGTCTTCCTTGCTTTAGACTTTAAATCTT  797
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GAACCATCTCACCAGCCCCCAGGTCTTCCTTGCTTTGTTCTTTAAATCTT  791

seq1  ACTCCAGTCTAGAGCATTGCCCTCATCTTAAAACAAAGGCAGCCACGCCA  847
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ACTCCAGTCTAGAGCATTGCCCTCATCTTACAACAAAGGCAGCCCCGCCA  841

seq1  AAACAAAGAAATTAGACCAGGAAGTAAAAGACCACAGAGGCACGCAAGAA  897
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAATTCCACCAGGAAGTAAAAGACCACAGAGGCACGCAAGAA  891

seq1  AGTCTCTGATATCGAGGCACCTTTGGCTTTGAAATACCAGGTAGGGCCTC  947
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAATATCGAGGCACCTTTGGCTTTGAAATACCAGGTAGGGCCTC  941

seq1  AGACCATAGTTTAGTTGGTAGGATGTTTACATGAAGCCCTGGGTTCGTCT  997
      ||||||||||||||||||||||||||||||||    |   ||||||||||
seq2  AGACCATAGTTTAGTTGGTAGGATGTTTACATTCCCCAAAGGGTTCGTCT  991

seq1  CCAGCACTGTATAAACCAGGTGTGGTGGTAGATACCTATGACCAAAGCTC  1047
      ||||| ||||||||||||||||  |||||||||||| |||||||||| | 
seq2  CCAGCTCTGTATAAACCAGGTGGCGTGGTAGATACCAATGACCAAAGATA  1041

seq1  TGGGGAGGTGGAGGAGGCCATCCTTGGCTATATAGCAAGTTCAAGGCCAG  1097
      |||||||||||||||||||||| | ||||||||||| |||||||||||||
seq2  TGGGGAGGTGGAGGAGGCCATCGTGGGCTATATAGCGAGTTCAAGGCCAG  1091

seq1  CCAGGAATATGAGACCCTGTCTCAAAAAATAAATGAATGAAGATATGGGG  1147
      |||||||||||||  |||||||||||||||||||||||||||||| | ||
seq2  CCAGGAATATGAGCACCTGTCTCAAAAAATAAATGAATGAAGATAAGCGG  1141

seq1  CTGGAGAGAAGGCTCAGTGGTTTAGAGTTCAACC  1181
      |||||||||||||||  ||| |||||||||||||
seq2  CTGGAGAGAAGGCTCCATGGCTTAGAGTTCAACC  1175