BAC Information

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BAC

Clone NameB6Ng01-070J23
Chromosome15 (Build37)
Map Location 85,344,858 - 85,475,793
singlet/doubletdoublet
Overlap geneWnt7b, LOC100042240
Upstream geneLdoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745
Downstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J23.bB6Ng01-070J23.g
ACCDH888572DH888573
length4901,146
definitionDH888572|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J23, 5' end.DH888573|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,344,858 - 85,345,353)(85,474,632 - 85,475,793)
sequence
tctggggtgggtggaagcacttcacccatgcagctactcaccccgactgc
tttctcaaagtcctcggtgtttctggtgctgtgaaagtagctgacagcca
cacagacctctgtgctgccaccacagagcgcacacactgatcattctgga
gactggaagctgcagggcctttgcagagtcaactaagagacctatgactg
gcatgagggatgggcaaagagggttctagaattttaatagaaatccttta
aattttttttgattagggggagccggagagatggcttagtggttaagagc
actggctgctctcccagaggaccctggttcaattcccagcacccacatgg
cagctcacaactctctgtaactccagttctaaggaatcctacaacctcac
acagacatgcatgcagataaaacattgtacataaaaaaaaataaaagaaa
gaaagggaaggatggaaagagggagagagtgggaggggga
gaattcagtctaagttatgctctgttttaagggggaagcctgcctgcttt
ctctgctggcatcctttcgggaaaccccatttgatattttcatttccttt
ttcccccttatttagtttttatccatagtcataaacttaactttgcaggg
gactgttaagactcggaggcaaatgaggaatatatgggaccccgtgggag
cagagactatggggtagacatggtggggacaccctcctgagctacagaag
gaatggcctggtgggtaagatgcccaaaagtcagaagaatcagagtcgcc
cacagtgggcaatggtgaccttcttgctggtcttgccgttcctaaaccgc
tctaatggcttctgtgacgttcaggtctactttcagcttcccaaagccca
tatgtttgccatctagctacccgagccttgcagtgcagatgaggaactgg
gcactgtttgtgtattgttcagtgctcgccacggacaagatgtcaggacc
caaatgcttcaggacaaagttctcaccctcaaatctctccctgcagatgg
atccgctgccattatgcgaagtcgccaccctggcctgtgaatcctgaaat
aacgccgtgaaagggagctcttacggcctaagttttctctctggtgctca
gatcatgaatggttttttggttgcctttggaattttgtcagcaaaggctc
acaccatcagcaccgaagtgggactgaccatggccgtggcaagcgacaac
agggacagcggagtctgtgagcccacagtgtatttttcaatgcatccaaa
atgctcagtttgtcccaaaggacctgtaacctaatgtttcagaatcaaag
tagaaaagctgtgactttgaggcactctgagctgcgtggtgagaaactct
caaaacccaagtgggctgaagaaagaaatgggtgaaaactggcactgctc
ttctagaggacctgtgttttcccacagcagatcacaactgctatactcag
ctcagggttatgacatctcatctgggctcatcagatgcctgagtgcctga
cgtgctcgagtgcctattaccacatacgaccaccaacaacaactactaca
acaaggttgcaaaccacacaccacttaatgaatctccagaatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85344858_85345353
seq2: B6Ng01-070J23.b_47_542

seq1  GAATTCTCTGGGGTGGGTGGAAGCACTTCACCCATGCAGCTACTCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGGTGGGTGGAAGCACTTCACCCATGCAGCTACTCACCCC  50

seq1  GACTGCTTTCTCAAAGTCCTCGGTGTTTCTGGTGCTGTGAAAGTAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTTCTCAAAGTCCTCGGTGTTTCTGGTGCTGTGAAAGTAGCTGA  100

seq1  CAGCCACACAGACCTCTGTGCTGCCACCACAGAGCGCACACACTGATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACAGACCTCTGTGCTGCCACCACAGAGCGCACACACTGATCAT  150

seq1  TCTGGAGACTGGAAGCTGCAGGGCCTTTGCAGAGTCAACTAAGAGACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACTGGAAGCTGCAGGGCCTTTGCAGAGTCAACTAAGAGACCTA  200

seq1  TGACTGGCATGAGGGATGGGCAAAGAGGGTTCTAGAATTTTAATAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCATGAGGGATGGGCAAAGAGGGTTCTAGAATTTTAATAGAAAT  250

seq1  CCTTTAAATTTTTTTTGATTAGGGGGAGCCGGAGAGATGGCTTAGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATTTTTTTTGATTAGGGGGAGCCGGAGAGATGGCTTAGTGGTT  300

seq1  AAGAGCACTGGCTGCTCTCCCAGAGGACCCTGGTTCAATTCCCAGCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGGCTGCTCTCCCAGAGGACCCTGGTTCAATTCCCAGCACCC  350

seq1  ACATGGCAGCTCACAACTCTCTGTAACTCCAGTTCTAAGGAATCCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGCTCACAACTCTCTGTAACTCCAGTTCTAAGGAATCCTACAA  400

seq1  CCTCACACAGACATGCATGCAGATAAAACATTGTACATAAAAAAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAGACATGCATGCAGATAAAACATTGTACATAAAAAAAAATAA  450

seq1  AAGAAAGAAAGGGAAGGATGGAAAGAGGGAGAGAGTGGGAGGGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGGAAGGATGGAAAGAGGGAGAGAGTGGGAGGGGGA  496

seq1: chr15_85474632_85475793
seq2: B6Ng01-070J23.g_67_1212 (reverse)

seq1  GCTCTATTCTGGAGATTCATTTTTAAGTGTGTGTGT-GTTTGCACGTGTG  49
      |||| ||||||||||||||   ||||||| |||||| |||||||    ||
seq2  GCTC-ATTCTGGAGATTCA---TTAAGTG-GTGTGTGGTTTGCAACCTTG  45

seq1  TGTGT-GTGTGTGTGTGTGTGTGTGTGTATGTGTGTATATGTGCACTCGA  98
      | ||| ||   ||| |||  |||   ||||||| ||| ||  ||||||||
seq2  T-TGTAGTAGTTGT-TGTTGGTGGTCGTATGTG-GTA-ATAGGCACTCGA  91

seq1  GCACGCTCAGGCACTCAGGCATCTGATGAGCCCAGATGAGGATGTCATAT  148
      ||||| ||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GCACG-TCAGGCACTCAGGCATCTGATGAGCCCAGATGA-GATGTCATA-  138

seq1  ACCCTGGAGCTGGAGTTATAGGCAGTTGTGATCTGCCTGGTGGGAAAACA  198
      ||||| ||||| ||| |||| |||||||||||||||   |||||||||||
seq2  ACCCT-GAGCT-GAG-TATA-GCAGTTGTGATCTGC--TGTGGGAAAACA  182

seq1  CAGGTCCTCTAGAAGAGCAGTGCCAGTTTTCACCCATTTCTTTCTTCAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTCTAGAAGAGCAGTGCCAGTTTTCACCCATTTCTTTCTTCAGC  232

seq1  CCACTTTGGTTTTGAGAGTTTCTCACCACGCAGCTCAGAGTGCCTCAAAG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGGTTTTGAGAGTTTCTCACCACGCAGCTCAGAGTGCCTCAAAG  282

seq1  TCACAGCTTTTCTACTTTGATTCTGAAACATTAGGTTACAGGTCCTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTTTTCTACTTTGATTCTGAAACATTAGGTTACAGGTCCTTTGG  332

seq1  GACAAACTGAGCATTTTGGATGCATTGAAAAATACACTGTGGGCTCACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTGAGCATTTTGGATGCATTGAAAAATACACTGTGGGCTCACAG  382

seq1  ACTCCGCTGTCCCTGTTGTCGCTTGCCACGGCCATGGTCAGTCCCACTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCTGTCCCTGTTGTCGCTTGCCACGGCCATGGTCAGTCCCACTTC  432

seq1  GGTGCTGATGGTGTGAGCCTTTGCTGACAAAATTCCAAAGGCAACCAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGATGGTGTGAGCCTTTGCTGACAAAATTCCAAAGGCAACCAAAA  482

seq1  AACCATTCATGATCTGAGCACCAGAGAGAAAACTTAGGCCGTAAGAGCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCATGATCTGAGCACCAGAGAGAAAACTTAGGCCGTAAGAGCTC  532

seq1  CCTTTCACGGCGTTATTTCAGGATTCACAGGCCAGGGTGGCGACTTCGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACGGCGTTATTTCAGGATTCACAGGCCAGGGTGGCGACTTCGCA  582

seq1  TAATGGCAGCGGATCCATCTGCAGGGAGAGATTTGAGGGTGAGAACTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAGCGGATCCATCTGCAGGGAGAGATTTGAGGGTGAGAACTTTG  632

seq1  TCCTGAAGCATTTGGGTCCTGACATCTTGTCCGTGGCGAGCACTGAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGCATTTGGGTCCTGACATCTTGTCCGTGGCGAGCACTGAACAA  682

seq1  TACACAAACAGTGCCCAGTTCCTCATCTGCACTGCAAGGCTCGGGTAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAACAGTGCCCAGTTCCTCATCTGCACTGCAAGGCTCGGGTAGCT  732

seq1  AGATGGCAAACATATGGGCTTTGGGAAGCTGAAAGTAGACCTGAACGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAACATATGGGCTTTGGGAAGCTGAAAGTAGACCTGAACGTCA  782

seq1  CAGAAGCCATTAGAGCGGTTTAGGAACGGCAAGACCAGCAAGAAGGTCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCATTAGAGCGGTTTAGGAACGGCAAGACCAGCAAGAAGGTCAC  832

seq1  CATTGCCCACTGTGGGCGACTCTGATTCTTCTGACTTTTGGGCATCTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCCACTGTGGGCGACTCTGATTCTTCTGACTTTTGGGCATCTTAC  882

seq1  CCACCAGGCCATTCCTTCTGTAGCTCAGGAGGGTGTCCCCACCATGTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGCCATTCCTTCTGTAGCTCAGGAGGGTGTCCCCACCATGTCTA  932

seq1  CCCCATAGTCTCTGCTCCCACGGGGTCCCATATATTCCTCATTTGCCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGTCTCTGCTCCCACGGGGTCCCATATATTCCTCATTTGCCTCC  982

seq1  GAGTCTTAACAGTCCCCTGCAAAGTTAAGTTTATGACTATGGATAAAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAACAGTCCCCTGCAAAGTTAAGTTTATGACTATGGATAAAAAC  1032

seq1  TAAATAAGGGGGAAAAAGGAAATGAAAATATCAAATGGGGTTTCCCGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGGGGAAAAAGGAAATGAAAATATCAAATGGGGTTTCCCGAAA  1082

seq1  GGATGCCAGCAGAGAAAGCAGGCAGGCTTCCCCCTTAAAACAGAGCATAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAGCAGAGAAAGCAGGCAGGCTTCCCCCTTAAAACAGAGCATAA  1132

seq1  CTTAGACTGAATTC  1162
      ||||||||||||||
seq2  CTTAGACTGAATTC  1146