BAC Information

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BAC

Clone NameB6Ng01-071N02
Chromosome15 (Build37)
Map Location 18,419,219 - 18,420,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071N02.bB6Ng01-071N02.g
ACCDH889407DH889408
length1,1211,162
definitionDH889407|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N02, 5' end.DH889408|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaagtgaggaataccaaatgacctagaagcacctgaaaaaaat
gttcattaagcatcagggaaatgcaaatctaaacaaccctcacaccagtc
agaatggctaagatcaaatattcaagtgacagcagatgctggcgaggatg
ttgagaaagaggaacactcttccgtttctggtgggattgcaagcttgtac
aaccactctggaagtcagtctggaggttcctcagacaattggacatagaa
gtaccagaagatctagcaatacctctcctgggcatatacccagaagatgt
tccaagtggtaataagaacacatgccccactatgttcacagcagccttat
ttataatagccagaagctggaaagaacccagatgcccctcaacagaagaa
tgaatacagaaaatgtggtacatttacacaatggagtactactcagctat
taaaaacaatgaatttatgaaattcttggacaaatggatgtatctcgagg
atagcatccttagtgaggtaactcaatcacaaaagaagtcattagatatg
cactcactgataagtggatattaacccagaaacatagaacacccaagata
caatttgcaaatcacaagaaaatcaagaagagggaagaccaatgtgtgga
tacttcattcctccttagaataggggaaaaaatacccatgaaatgagtta
cagagacaaagtttggagctaagacgaaaagctggactatccagagacta
ccctacctggagatccatcccataatcagctaccaactcagacactattg
catatgccagaaagatttgctgaagaaaccctgttatagcttgtcctata
ttggaggctatgcagtgctggcaaatacagatggaggctccaagtcatct
taagatggaaccaggccctatgggagagcttaagaaagcacctagggctg
gaggggttcgcaccttttgtggaccacatttgactacgtacctgaggcgg
tacttacgtcttattgcacagagatgctatggcctcatctagagagagag
gtcctttgtattgcacctttatatgcttaatacgggaaattgcgaccaaa
gcagatgttgtgtagggcacg
gaattcacttcacccacatgctagaatcaaaatcacagtaatggaggtaa
gtcccaagctaccaggacataaatattagagtggtttaaacgcgaagatc
tacacattagagggaaatagagaaggaagaaaacacagaaatcatagcac
aacagaaggaagggtttgtgagcaggaagtttccagtgaagtgacactat
cctccttacaagtcttcacaggattgtgctcctcattctgttatttcctg
gaggtgttaagccatagagtttctgaaggttcatatagtctgtgaaattg
gaaagtttaaatattagtacctccatgtatgctatccatggaaacaggat
gtttttaacactaataataatcactgtctacaaattgacagtatcatctc
tgacgtctatcccatagatgcaaaatgacagtaacagataaaaaatgtca
tgcctgtccttgacaaggacctctttctgttgaatttctagctgcactcg
cttggtggcctccttaaatttctctttccaaaacaacttactttggcttt
gactgtggagaacccaacactctaaatgaagtcttgagatgagaatgtct
ttgtcattgtctctatctcagctggaaagattactatttttttatgtgaa
gagtcaatgccctttacattttgttttaactgtgcataagttatacattt
gtctttacactggagttcatcaaacctagttacaaacgttaataagtatc
aaatagttctataattacagacaccacaaaatcacactgaacagaacaca
tttagaatctgtaaaatgcaacagacacttttcttagaagctttttcaac
aactctgtcctctgtatcctctctactgtcctttcctgagacacacaaat
actccagttctgtcacttcaggactggctacatttttgtcatagagataa
gtaaaatgggatgttctctttgtaagaaacttcttccattcaccaattgc
ctgtgaaatgtatccgtgttactgcacttgttcttttcatacttttatat
tacacatttatttcttccatctactatgtggaaactagatttattttcaa
tttttcatatgtggagtaatgctttgtggatgttatagttagatggcaac
cattctggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18419219_18420394
seq2: B6Ng01-071N02.g_66_1227 (reverse)

seq1  TCCTCCAGAATGTGTTTGCTCATCTATACTATAACATTCACATAGCAATT  50
      ||||||||||  || |||| |||||| |||||||||| |||| ||||   
seq2  TCCTCCAGAA--TGGTTGC-CATCTA-ACTATAACATCCACAAAGCA---  43

seq1  TTACT-CACATAATGAAAAATTGAAAATAAATCTAGTATCCCACAATAGT  99
      ||||| ||||| ||||||||||||||||||||||||| | |||| |||||
seq2  TTACTCCACAT-ATGAAAAATTGAAAATAAATCTAGT-TTCCAC-ATAGT  90

seq1  AGAATGGAGAAATTAAATGTGTAATATAAAAGTAATGAAAAGAACCAAGT  149
      || |||||  || |||||||||||||||||||| |||||||||| |||||
seq2  AG-ATGGAAGAAATAAATGTGTAATATAAAAGT-ATGAAAAGAA-CAAGT  137

seq1  GCAGTAACACGGATACATTTCACAGGCAATTGGTTGAATGGAAGAAGTTT  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGTAACACGGATACATTTCACAGGCAATTGG-TGAATGGAAGAAGTTT  186

seq1  CTTACAAAAGAGAACATCCCATTTTACTTATCTCTATGACAAAAATGTAG  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAC-AAAGAGAACATCCCATTTTACTTATCTCTATGACAAAAATGTAG  235

seq1  CCAGTCCTGAAGTGACAGAACTGGAGTATTTGTGTGTCTCAGGAAAGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGAAGTGACAGAACTGGAGTATTTGTGTGTCTCAGGAAAGGAC  285

seq1  AGTAGAGAGGATACAGAGGACAGAGTTGTTGAAAAAGCTTCTAAGAAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAGGATACAGAGGACAGAGTTGTTGAAAAAGCTTCTAAGAAAAG  335

seq1  TGTCTGTTGCATTTTACAGATTCTAAATGTGTTCTGTTCAGTGTGATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTGCATTTTACAGATTCTAAATGTGTTCTGTTCAGTGTGATTTT  385

seq1  GTGGTGTCTGTAATTATAGAACTATTTGATACTTATTAACGTTTGTAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCTGTAATTATAGAACTATTTGATACTTATTAACGTTTGTAACT  435

seq1  AGGTTTGATGAACTCCAGTGTAAAGACAAATGTATAACTTATGCACAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGATGAACTCCAGTGTAAAGACAAATGTATAACTTATGCACAGTT  485

seq1  AAAACAAAATGTAAAGGGCATTGACTCTTCACATAAAAAAATAGTAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATGTAAAGGGCATTGACTCTTCACATAAAAAAATAGTAATCT  535

seq1  TTCCAGCTGAGATAGAGACAATGACAAAGACATTCTCATCTCAAGACTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTGAGATAGAGACAATGACAAAGACATTCTCATCTCAAGACTTC  585

seq1  ATTTAGAGTGTTGGGTTCTCCACAGTCAAAGCCAAAGTAAGTTGTTTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGTGTTGGGTTCTCCACAGTCAAAGCCAAAGTAAGTTGTTTTGG  635

seq1  AAAGAGAAATTTAAGGAGGCCACCAAGCGAGTGCAGCTAGAAATTCAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATTTAAGGAGGCCACCAAGCGAGTGCAGCTAGAAATTCAACA  685

seq1  GAAAGAGGTCCTTGTCAAGGACAGGCATGACATTTTTTATCTGTTACTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCCTTGTCAAGGACAGGCATGACATTTTTTATCTGTTACTGT  735

seq1  CATTTTGCATCTATGGGATAGACGTCAGAGATGATACTGTCAATTTGTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCATCTATGGGATAGACGTCAGAGATGATACTGTCAATTTGTAG  785

seq1  ACAGTGATTATTATTAGTGTTAAAAACATCCTGTTTCCATGGATAGCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTATTATTAGTGTTAAAAACATCCTGTTTCCATGGATAGCATA  835

seq1  CATGGAGGTACTAATATTTAAACTTTCCAATTTCACAGACTATATGAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGTACTAATATTTAAACTTTCCAATTTCACAGACTATATGAACC  885

seq1  TTCAGAAACTCTATGGCTTAACACCTCCAGGAAATAACAGAATGAGGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACTCTATGGCTTAACACCTCCAGGAAATAACAGAATGAGGAGC  935

seq1  ACAATCCTGTGAAGACTTGTAAGGAGGATAGTGTCACTTCACTGGAAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTGTGAAGACTTGTAAGGAGGATAGTGTCACTTCACTGGAAACT  985

seq1  TCCTGCTCACAAACCCTTCCTTCTGTTGTGCTATGATTTCTGTGTTTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCACAAACCCTTCCTTCTGTTGTGCTATGATTTCTGTGTTTTCT  1035

seq1  TCCTTCTCTATTTCCCTCTAATGTGTAGATCTTCGCGTTTAAACCACTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTATTTCCCTCTAATGTGTAGATCTTCGCGTTTAAACCACTCT  1085

seq1  AATATTTATGTCCTGGTAGCTTGGGACTTACCTCCATTACTGTGATTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATGTCCTGGTAGCTTGGGACTTACCTCCATTACTGTGATTTTG  1135

seq1  ATTCTAGCATGTGGGTGAAGTGAATTC  1176
      |||||||||||||||||||||||||||
seq2  ATTCTAGCATGTGGGTGAAGTGAATTC  1162