BAC Information

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BAC

Clone NameB6Ng01-071O03
Chromosome15 (Build37)Y (Build37)
Map Location 24,250,701 - 24,251,4261,870,464 - 1,870,623
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC624863, LOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O03.bB6Ng01-071O03.g
ACCDH889453DH889454
length964824
definitionDH889453|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O03, 5' end.DH889454|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,250,701 - 24,251,426)(1,870,464 - 1,870,623)
sequence
cagaggtgggactgggaagggggcacactttggaatgtaaacagataaaa
tgatttaatcaaaaactattaataacttttcaaagattttaatatgctat
aattattctggaaccttgtctattttcaggaaataaaattgcaattttac
atttaggaaaactgtatgtcttcaattcactgcttctcaacctgtaggcc
atgacttctttgaggacaaacgatctatgtgaggagccgccctcacattt
gccattataagatggcactgacagctgtgttctaagtggtaaacatagtc
tgcacacatgcaggggcagttttcccaccatgtgttctgcctttcccgtg
atgacaactgggccgatgggctgcagccaatcagggagtaatacatccta
ggtggaggataattctccttaaaaagggatggggtatcgccatttgctgg
cttgctctcttgcttcttgcgggcttgctctcttgcactctggctcctga
agatgtaagcaataaagctttgccgcagaagattctggtttgttgcgtct
ttcctggccggtcgtgagaacgcgtctaataacaattggtgccgaaaccc
gggacgggacgagaaattccgggacgagaaaaaatccgggacgaaaaaat
acgagaaaaaactcgggactggcgcaaggaagatccctcattccagaacc
agaactgcgggtcgcggtaataaaggttcccgtaaagcagactgttaaga
aggattcaactgtatgaattcagaacttttcagctggggaacgagagtac
cagtgagtatagctttatgaggtaagcctggccttgaattttctaaggaa
ttcaagacagtctatcagaagtaaagtggaaaatggctttacaagttatg
tttggccttgaattttttctagtgttaaaagcccttttgttccttttcac
atgttatcaagtgg
gaattctgcagaagatggggattgtaggagccataggatcaaagaaatcc
atagaatcaactaacgtgaggttataggagcacacagagactgaagcaac
aatcaaggagtctgtatgggtctgaccttggtcctctgcacatatattat
ggttgtgtaatttggtgttcttgtgggatatttaacagtgggaatggagg
ttgtctctgactctcctgcctgcttatggtacccttttcctcctactgga
ttttcttttctgttttttttttttttttttttttttttttttttttttac
tatttttttaatttattttttattacatattttcctcaattacatttcca
atgctatcccaaaagtcccccataccctccccccacttccctacccactc
attcccattttttcttttggccctggcgttcccctgtactggggcatata
tagtttgcgtgtccaatgggcctctctttccagtgatggccgactaaacc
atcttttgatacatatgcagctagagtcaagaactccggggtactggtta
gttcataatgttgttccacctatagggttgcagatccctttagctccttg
ggtactttctctagctcctccattgggagccctgtgatccatccaataac
tgactgtgagcatccacttctgtgtttgctaggccccggcatagtctccc
aagagacatctacatctgggccctttcgataaaatcttgctagtgtatgc
aatggtgtcagcgtttggaagctgattatgggttggatccctggatatgg
cagtctctacatggtccatccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24250701_24251426
seq2: B6Ng01-071O03.b_54_779

seq1  CAGAGGTGGGACTGGGAAGGGGGCACACTTTGGAATGTAAACAGATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGGGACTGGGAAGGGGGCACACTTTGGAATGTAAACAGATAAAA  50

seq1  TGATTTAATCAAAAACTATTAATAACTTTTCAAAGATTTTAATATGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAATCAAAAACTATTAATAACTTTTCAAAGATTTTAATATGCTAT  100

seq1  AATTATTCTGGAACCTTGTCTATTTTCAGGAAATAAAATTGCAATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTGGAACCTTGTCTATTTTCAGGAAATAAAATTGCAATTTTAC  150

seq1  ATTTAGGAAAACTGTATGTCTTCAATTCACTGCTTCTCAACCTGTAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAAAACTGTATGTCTTCAATTCACTGCTTCTCAACCTGTAGGCC  200

seq1  ATGACTTCTTTGAGGACAAACGATCTATGTGAGGAGCCGCCCTCACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTTTGAGGACAAACGATCTATGTGAGGAGCCGCCCTCACATTT  250

seq1  GCCATTATAAGATGGCACTGACAGCTGTGTTCTAAGTGGTAAACATAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATAAGATGGCACTGACAGCTGTGTTCTAAGTGGTAAACATAGTC  300

seq1  TGCACACATGCAGGGGCAGTTTTCCCACCATGTGTTCTGCCTTTCCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATGCAGGGGCAGTTTTCCCACCATGTGTTCTGCCTTTCCCGTG  350

seq1  ATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACATCCTA  400

seq1  GGTGGAGGATAATTCTCCTTAAAAAGGGATGGGGTATCGCCATTTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGATAATTCTCCTTAAAAAGGGATGGGGTATCGCCATTTGCTGG  450

seq1  CTTGCTCTCTTGCTTCTTGCGGGCTTGCTCTCTTGCACTCTGGCTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCTTGCTTCTTGCGGGCTTGCTCTCTTGCACTCTGGCTCCTGA  500

seq1  AGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTTTGTTGCGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTTTGTTGCGTCT  550

seq1  TTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAAACCC  600

seq1  GGGACGGGACGAGAAATTCCGGGACGAGAAAAAATCCGGGACGAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGGGACGAGAAATTCCGGGACGAGAAAAAATCCGGGACGAAAAAAT  650

seq1  ACGAGAAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACC  700

seq1  AGAACTGCGGGTCGCGGTAATAAAGG  726
      ||||||||||||||||||||||||||
seq2  AGAACTGCGGGTCGCGGTAATAAAGG  726

seq1: chrY_1870464_1870623
seq2: B6Ng01-071O03.g_401_562 (reverse)

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATA  50
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTATATA  50

seq1  TGCCCCAGTACAGGGGAACGCCAGGGCC-----AAAAAGGGGCAGTGGGT  95
      ||||||||||||||||||||||||||||     |||||  || | || ||
seq2  TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAGAAAAAATGGGAATGAGT  100

seq1  GGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATT  145
      |||||||| ||||||   ||| || |||||||||||||||| ||||||||
seq2  GGGTAGGGAAGTGGG---GGGAGGGTATGGGGGACTTTTGGGATAGCATT  147

seq1  GGAAATGTAAATGAG  160
      |||||||||| ||||
seq2  GGAAATGTAATTGAG  162