BAC Information

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BAC

Clone NameB6Ng01-072M15
Chromosome15 (Build37)
Map Location 11,949,248 - 12,122,586
singlet/doubletdoublet
Overlap geneLOC100040027, Zfr, LOC100040052
Upstream geneSlc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1
Downstream geneLOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072M15.bB6Ng01-072M15.g
ACCDH890101DH890102
length1,184655
definitionDH890101|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M15, 5' end.DH890102|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,949,248 - 11,950,431)(12,121,934 - 12,122,586)
sequence
gaattcagcaaggaacactctggtaaaaccttaaactgtggagataatgc
aaaaatcagtactatctgggcgtttctggggacagatgggtaacaggcac
agcacacggatttttagggcattgaaatgtctctgtatgagactatgttg
gagggacatatggcttcccacattgtccaaaacgcaggtagatagcgcca
agagcaggcggaatgaaaacgatgtattttggggagactgtgcagtgtcg
ggttcactgatttgcacccacggcggggagggaggcgtacggggtgacag
tggggaaggtgatccacgtgcagaggcaggagttacgggtggaggtgcta
agggggtgtctgtgcattagttataaattaaataaataaattttggtttt
gccctttttaaaaattttttcttttaacatctgaaaaatacattccaaga
ctggttcaagtacccgtgatttcatggaacacccatctctgacagccttt
cagcttcttgtctttaggctgtctctagcagtcacaagatggctgccaca
gctctgagctctgtatctttcaacgagcatagggaggcgtcctgagagaa
agcacacctaatggggctatttgcctggtacgctctgacttccctccccc
aggaaagagttcttggcaaatgtacaagagatgcccgcttttttcttttc
agctgtaactctgccacgctcagcaccagaggataatcctgggaaatgga
cctgctatgatttgcctcagaatgcttttgtcccggctgaccaaagaagg
aagaaaatggcttgaaagatgagaaaaaaaattgcatccatatataaatg
cgtgtatacacagagattcatttgttcatacagagaatgcacatttcttt
actatgtatagccaaaggaaaattcatgtattcatctattttagagggaa
aatacacatattttactttcgatactaaaattcaaagaaaataacagctc
attgtattatccatgaaaaaataacatatctatattttttcctctctaat
tttttcttccaaaagagaattctagaaaatgtactttgaaagaaagaaaa
gcagccttttctcttataggttgctttgcttgaaatatcccaccaaagac
aattatgcaagaaccaagcatctatttgacatag
gaattcactctgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggcgtgtgccaccaccgcccggca
taaaataaaaatttaaggaatgtataacttggtttactttttaaatatat
ttgattctttaggacaaaatctttgatgtacagtagctaagtcaaaggct
ctcaatgaatatgtatgtatgtatgtatatgtatttatttaatgtatatg
agtacactgtagctgtcttcagacacaccagaagagggcattggatccca
ttacagatggttgtgagccaccatgtgggtgctgggaattgaactcagga
cctctggaagagcagtcagtggtattgataagttcagaccttaatggttt
caacctttatatactttgtcagtcggattgatgagcattcaattgtcttt
aaaaatttgtgcatttatttgattactaataagggtaaaagtttggcttc
atattcctataaaccatttatatttctttttgaggattatctggacacat
aaacatgatattgcccattccacgttttgagatggtgtctgtgctaatgc
ttttacttctgggaacaatatggaataaaaacattttaatggggtaattt
gcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_11949248_11950431
seq2: B6Ng01-072M15.b_44_1227

seq1  GAATTCAGCAAGGAACACTCTGGTAAAACCTTAAACTGTGGAGATAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAGGAACACTCTGGTAAAACCTTAAACTGTGGAGATAATGC  50

seq1  AAAAATCAGTACTATCTGGGCGTTTCTGGGGACAGATGGGTAACAGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGTACTATCTGGGCGTTTCTGGGGACAGATGGGTAACAGGCAC  100

seq1  AGCACACGGATTTTTAGGGCATTGAAATGTCTCTGTATGAGACTATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACGGATTTTTAGGGCATTGAAATGTCTCTGTATGAGACTATGTTG  150

seq1  GAGGGACATATGGCTTCCCACATTGTCCAAAACGCAGGTAGATAGCGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACATATGGCTTCCCACATTGTCCAAAACGCAGGTAGATAGCGCCA  200

seq1  AGAGCAGGCGGAATGAAAACGATGTATTTTGGGGAGACTGTGCAGTGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCGGAATGAAAACGATGTATTTTGGGGAGACTGTGCAGTGTCG  250

seq1  GGTTCACTGATTTGCACCCACGGCGGGGAGGGAGGCGTACGGGGTGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACTGATTTGCACCCACGGCGGGGAGGGAGGCGTACGGGGTGACAG  300

seq1  TGGGGAAGGTGATCCACGTGCAGAGGCAGGAGTTACGGGTGGAGGTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGGTGATCCACGTGCAGAGGCAGGAGTTACGGGTGGAGGTGCTA  350

seq1  AGGGGGTGTCTGTGCATTAGTTATAAATTAAATAAATAAATTTTGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGTCTGTGCATTAGTTATAAATTAAATAAATAAATTTTGGTTTT  400

seq1  GCCCTTTTTAAAAATTTTTTCTTTTAACATCTGAAAAATACATTCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTTTAAAAATTTTTTCTTTTAACATCTGAAAAATACATTCCAAGA  450

seq1  CTGGTTCAAGTACCCGTGATTTCATGGAACACCCATCTCTGACAGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAAGTACCCGTGATTTCATGGAACACCCATCTCTGACAGCCTTT  500

seq1  CAGCTTCTTGTCTTTAGGCTGTCTCTAGCAGTCACAAGATGGCTGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTGTCTTTAGGCTGTCTCTAGCAGTCACAAGATGGCTGCCACA  550

seq1  GCTCTGAGCTCTGTATCTTTCAACGAGCATAGGGAGGCGTCCTGAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGCTCTGTATCTTTCAACGAGCATAGGGAGGCGTCCTGAGAGAA  600

seq1  AGCACACCTAATGGGGCTATTTGCCTGGTACGCTCTGACTTCCCTCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCTAATGGGGCTATTTGCCTGGTACGCTCTGACTTCCCTCCCCC  650

seq1  AGGAAAGAGTTCTTGGCAAATGTACAAGAGATGCCCGCTTTTTTCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGTTCTTGGCAAATGTACAAGAGATGCCCGCTTTTTTCTTTTC  700

seq1  AGCTGTAACTCTGCCACGCTCAGCACCAGAGGATAATCCTGGGAAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAACTCTGCCACGCTCAGCACCAGAGGATAATCCTGGGAAATGGA  750

seq1  CCTGCTATGATTTGCCTCAGAATGCTTTTGTCCCGGCTGACCAAAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATGATTTGCCTCAGAATGCTTTTGTCCCGGCTGACCAAAGAAGG  800

seq1  AAGAAAATGGCTTGAAGGATGAGAAAAAAAATTGCATCCATATATAAATG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAAATGGCTTGAAAGATGAGAAAAAAAATTGCATCCATATATAAATG  850

seq1  CGTGTATACACAGAGATTCATTTGTTCATACAGAGAATGCACATTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATACACAGAGATTCATTTGTTCATACAGAGAATGCACATTTCTTT  900

seq1  ACTATGTATAGCCAAAGGAAAATTCAGGTATTCATCTA-TTTAGAGGGAA  949
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ACTATGTATAGCCAAAGGAAAATTCATGTATTCATCTATTTTAGAGGGAA  950

seq1  AATACACATA-TTTACTTTCGATACATAAAATCAAAAGAAAAT-ACAGCT  997
      |||||||||| |||||||||||||| ||||||  ||||||||| ||||||
seq2  AATACACATATTTTACTTTCGATAC-TAAAATTCAAAGAAAATAACAGCT  999

seq1  CATTGTATTAT-CATGGAAAAAATACATATCTATATATTTT-CTCTCT-A  1044
      ||||||||||| |||| |||||  |||||||||||| |||| |||||| |
seq2  CATTGTATTATCCATGAAAAAATAACATATCTATATTTTTTCCTCTCTAA  1049

seq1  TTTTTTCTTTCAAAAGAGAATTCTAGAAAATGTTACTTTGACAGAAAGAC  1094
      ||||||||| |||||||||||||||||||||| |||||||| ||||||| 
seq2  TTTTTTCTTCCAAAAGAGAATTCTAGAAAATG-TACTTTGAAAGAAAGAA  1098

seq1  AGGCAG-CTTTTCTC-TATAGGTGTGCTTAGC-TGGAATATCCACAACAA  1141
      | |||| |||||||| ||||||| ||||| || || ||||||  | || |
seq2  AAGCAGCCTTTTCTCTTATAGGT-TGCTTTGCTTGAAATATC--CCACCA  1145

seq1  AAGACAATTATGGAAAGAAACACAAGCATGCCTA-TTGACATAG  1184
      ||||||||||| | |||||   |||||||  ||| |||||||||
seq2  AAGACAATTAT-GCAAGAA--CCAAGCAT--CTATTTGACATAG  1184

seq1: chr15_12121934_12122586
seq2: B6Ng01-072M15.g_71_724 (reverse)

seq1  AAGC-AATTACCCCTTTAAACTGTTTTTGTTCCATATTTGTTCCAGAAGT  49
      |||| ||||||||| ||||| ||||||| |||||||||  | ||||||||
seq2  AAGCAAATTACCCCATTAAAATGTTTTTATTCCATATTGTTCCCAGAAGT  50

seq1  -AAAGCATTAGCACAGACACCATCTCAAAAACGTGGAATGGGCAATATCA  98
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAAGCATTAGCACAGACACCATCTC-AAAACGTGGAATGGGCAATATCA  99

seq1  TGTTTATGTGTCCAGATAATCCTCAAAAAGAAATATAAATGGTTTATAGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGTCCAGATAATCCTCAAAAAGAAATATAAATGGTTTATAGG  149

seq1  AATATGAAGCCAAACTTTTACCCTTATTAGTAATCAAATAAATGCACAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGCCAAACTTTTACCCTTATTAGTAATCAAATAAATGCACAAA  199

seq1  TTTTTAAAGACAATTGAATGCTCATCAATCCGACTGACAAAGTATATAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGACAATTGAATGCTCATCAATCCGACTGACAAAGTATATAAA  249

seq1  GGTTGAAAACATTAAGGTCTGAACTTATCAATACCACTGACTGCTCTTCC  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAACCATTAAGGTCTGAACTTATCAATACCACTGACTGCTCTTCC  299

seq1  AGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACAACCATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACAACCATC  349

seq1  TGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGT  399

seq1  GTACTCATATACATTAAATAAATACATATACATACATACATACATATTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATATACATTAAATAAATACATATACATACATACATACATATTCA  449

seq1  TTGAGAGCCTTTGACTTAGCTACTGTACATCAAAGATTTTGTCCTAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCCTTTGACTTAGCTACTGTACATCAAAGATTTTGTCCTAAAGA  499

seq1  ATCAAATATATTTAAAAAGTAAACCAAGTTATACATTCCTTAAATTTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATATTTAAAAAGTAAACCAAGTTATACATTCCTTAAATTTTTA  549

seq1  TTTTATGCCGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCCGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAG  599

seq1  GCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  649

seq1  AATTC  653
      |||||
seq2  AATTC  654