BAC Information

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BAC

Clone NameB6Ng01-072P02
Chromosome15 (Build37)
Map Location 98,630,871 - 98,777,535
singlet/doubletdoublet
Overlap geneDdn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b
Upstream geneHdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1
Downstream geneTuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P02.bB6Ng01-072P02.g
ACCDH890216DH890217
length660559
definitionDH890216|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P02, 5' end.DH890217|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,776,876 - 98,777,535)(98,630,871 - 98,631,630)
sequence
gaattcaggacagacagggctgtgtagagcatagaccctgtctcaataaa
agaaagcaaatcaacgggctggcgagaccgcttagcagttaagagcactg
actgctcttctgaaagtcctgagttcaaatcccagcaaccacatggcggc
tcacaaccatctgtaatgagatctgatgccctcttctggtgtgtctgaag
agagcaacagtgtacttatgtataataataaataaatctttgagcctgag
cagcagggacttgagcaagcagggccaactggagtgagcagaggttctaa
aaattcaattcccaacaaccacatgaaggctccaaccttcagctacaatg
tactcacatacacaaacaaaataaataagcctttaaagagagagagagag
agagagagagagagagagagagagcaagcaaaaacaaaacatgaaatgca
caaaaacaggcttaccaaatgaacgtaggaaagggatttgtagagaggag
cagggctttgcagggctgggaggaaaggagatgtgagaagaggattaagg
ttattagaatgtattatatacatgggtgacatggttaaagtacagttaat
tggcactcctctgagaagcccacatacaattactcttgattgtacttttc
tttttcctct
ctgggttcaagggattccccacccacaacccgccatgtagccgggactac
aggtgtatgcgtctgccccatgtgaaggtcagatgcttgctttatgcttg
ccttcagtaacctcttcgtgaccaaggcctctttcttcccagggccttgt
tccctgtggaactcatgtcttctcacattctggacgcatctgtttcctca
tcatctttgtgagaactacctcaaacatcccttcttcagctttcccttgg
cagagtgaccttgcctgcccgaactcttgaaatgctttgctggccatccg
tgtatgcagtagaccaggcttgcacctgcatgaggacacaggttaggtgt
ctctcattttgccatccttgctagcaccagatagggacattatatgccct
catcaaatgatgaataagtggattcatggatgaagaagcagacgcatgga
tagatggatatggagaggcacttgaatggatgatatatgagatgtggata
gatcagtaagtgcataggtaggatgcatggatagatgcatgcataggaag
gatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98776876_98777535
seq2: B6Ng01-072P02.b_34_693 (reverse)

seq1  AGAGGAAAAAGCAAGGTACACTCAAGAGTGCTTGTGTGTGGGCTTCTCAG  50
      ||||||||||| || ||||| ||||||||  |||| ||||||||||||||
seq2  AGAGGAAAAAGAAAAGTACAATCAAGAGTAATTGTATGTGGGCTTCTCAG  50

seq1  AGGAGTGCCACTTAACTGTCCTTTAACCATGTCACCCTTGTATATAATAC  100
      |||||||||| |||||||| ||||||||||||||||| ||||||||||||
seq2  AGGAGTGCCAATTAACTGTACTTTAACCATGTCACCCATGTATATAATAC  100

seq1  ATTCTAATTACCTTAATCCTCTTCTCACATCTCCTTTCCTCCCAGCCCTG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATAACCTTAATCCTCTTCTCACATCTCCTTTCCTCCCAGCCCTG  150

seq1  CAAAGCCCTGCTCCTCTCTACAAATCCCTTTCCTACGTTCATTTGGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTGCTCCTCTCTACAAATCCCTTTCCTACGTTCATTTGGTAAG  200

seq1  CCTGTTTTTGTGCATTTCATGTTTTGTTTTTGCTTGCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTGTGCATTTCATGTTTTGTTTTTGCTTGCTCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCTTTAAAGGCTTATTTATTTTGTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTTTAAAGGCTTATTTATTTTGTTTGTG  300

seq1  TATGTGAGTACATTGTAGCTGAAGGTTGGAGCCTTCATGTGGTTGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTACATTGTAGCTGAAGGTTGGAGCCTTCATGTGGTTGTTGGG  350

seq1  AATTGAATTTTTAGAACCTCTGCTCACTCCAGTTGGCCCTGCTTGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTTTTAGAACCTCTGCTCACTCCAGTTGGCCCTGCTTGCTCAA  400

seq1  GTCCCTGCTGCTCAGGCTCAAAGATTTATTTATTATTATACATAAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCTGCTCAGGCTCAAAGATTTATTTATTATTATACATAAGTACA  450

seq1  CTGTTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAG  500

seq1  ATGGTTGTGAGCCGCCATGTGGTTGCTGGGATTTGAACTCAGGACTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCGCCATGTGGTTGCTGGGATTTGAACTCAGGACTTTCA  550

seq1  GAAGAGCAGTCAGTGCTCTTAACTGCTAAGCGGTCTCGCCAGCCCGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTCTTAACTGCTAAGCGGTCTCGCCAGCCCGTTGA  600

seq1  TTTGCTTTCTTTTATTGAGACAGGGTCTCTTCTCTACACAGCCCTGTCTG  650
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  TTTGCTTTCTTTTATTGAGACAGGGTCTATGCTCTACACAGCCCTGTCTG  650

seq1  TCCTGAATTC  660
      ||||||||||
seq2  TCCTGAATTC  660

seq1: chr15_98630871_98631630
seq2: B6Ng01-072P02.g_36_600

seq1  GAATTCCTGGGTTCAAGGGATTCCCCACCCACAACCCGCCATGTAGCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTTCAAGGGATTCCCCACCCACAACCCGCCATGTAGCCGG  50

seq1  GACTACAGGTGTATGCGTCTGCCCCATGTGAAGGTCAGATGCTTGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGTGTATGCGTCTGCCCCATGTGAAGGTCAGATGCTTGCTTTA  100

seq1  TGCTTGCCTTCAGTAACCTCTTCGTGACCAAGGCCTCTTTCTTCCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTTCAGTAACCTCTTCGTGACCAAGGCCTCTTTCTTCCCAGGG  150

seq1  CCTTGTTCCCTGTGGAACTCATGTCTTCTCACATTCTGGACGCATCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCCCTGTGGAACTCATGTCTTCTCACATTCTGGACGCATCTGTT  200

seq1  TCCTCATCATCTTTGTGAGAACTACCTCAAACATCCCTTCTTCAGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCATCTTTGTGAGAACTACCTCAAACATCCCTTCTTCAGCTTTC  250

seq1  CCTTGGCAGAGTGACCTTGCCTGCCCGAACTCTTGAAATGCTTTGCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGAGTGACCTTGCCTGCCCGAACTCTTGAAATGCTTTGCTGGC  300

seq1  CATCCGTGTATGCAGTAGACCAGGCTTGCACCTGCATGAGGACACAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGTATGCAGTAGACCAGGCTTGCACCTGCATGAGGACACAGGTT  350

seq1  AGGTGTCTCTCATTTTGCCATCCTTGCTAGCACCAGATAGGGACATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTCTCATTTTGCCATCCTTGCTAGCACCAGATAGGGACATTATA  400

seq1  TGCCCTCATCAAATGATGAATAAGTGGATTCATGGATGAAGAAGCAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCATCAAATGATGAATAAGTGGATTCATGGATGAAGAAGCAGACG  450

seq1  CATGGATAGATGGATATGGAGAGGCACTTGAATGGATGATAGATGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGGATAGATGGATATGGAGAGGCACTTGAATGGATGATATATGAGATG  500

seq1  TGGATAGATCAGTAAGTGCATAGGTAGGATGCATGGATAGATGCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGATCAGTAAGTGCATAGGTAGGATGCATGGATAGATGCATGCAT  550

seq1  AGGAAGGATAGATA-GGTGAGTGGGTGGATGGGTGGATGGATGGAAGGAT  599
      |||||||||| |||                                    
seq2  AGGAAGGATATATAT-----------------------------------  565

seq1  GACTGGATGGGTGGATGGGTGATGATTGGATGGATAATTGGGTGGATTGA  649
                                                        
seq2  --------------------------------------------------  565

seq1  TGGGTGGGTGGATGGATGGATGGATGGATGATTGGATGGTTAATTGGGTG  699
                                                        
seq2  --------------------------------------------------  565

seq1  GATTGATGGGTGGGTGGATGGATGGACTGATGGAGCATTTATCCACAGAT  749
                                                        
seq2  --------------------------------------------------  565

seq1  GACTTGTATAT  760
                 
seq2  -----------  565