BAC Information

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BAC

Clone NameB6Ng01-073H20
Chromosome15 (Build37)
Map Location 102,789,527 - 102,922,644
singlet/doubletdoublet
Overlap geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H20.bB6Ng01-073H20.g
ACCDH890605DH890606
length4861,055
definitionDH890605|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H20, 5' end.DH890606|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,789,527 - 102,790,011)(102,921,595 - 102,922,644)
sequence
gaattcaactgagggttttctgtgtatttgtgtatgggggcatttcttga
gatgggatatttatctactatatttagctatatcaaggactgttatcatg
ctggccatattttctatataaaaatagacaagaatagaacaaactattta
aaaaggagactattaacctccaaaggactgcctattttggagaaagatat
ttagaacaggcagttatcactgttctaaaagatacaagctcagaaaagaa
tctctcttccagaagatatttctggtgaatgagaggaaagttatcatgaa
agaaaatcaaaggtttgtgtgatttgagtccaagaaccggccagggtgtg
gtgacagagagagagagagagagagagagagagagagagagagagagaga
cagagagagacagagagagacagagagagacagagaaacagagacataga
gagagagggagagagggggaaagggagagagggagt
gaattcattcactaactacatgcctactgaacactttcatacatatatgt
taaggatagtattttagctgggtggtggcagtgcacacctttaaccccag
aacttgggagataaagctagatggatctctgtgagtttgaggtcagcctg
gtctacagagtgggttccaggacagctaggactacacagagaaaccctgt
cttgaaaaaccaaaccaaaccaaccatccatccatccatccatccaacca
accgaccaaacaactccagtatttgaaatgtagcgtcatattgcccttgt
ctcctacttctcaagaggtagtcccaggattctgagaccaggaaagtcac
cccagattctgaaaatgagggatcccctatgggcaggtatcccataggtg
tgccattttagacactatcacaaggatagacatgcttgttgggactaggc
ccaaggggtcatcctggatctagcatgagtacaaaaggttcccacgggcc
ctcagcttctccaagctgcaggcaggcatactggaatagcacaccaggcc
cctgcctgtggaaacttacatttagacacaaattagagccagcaaatgac
tctggcagtcaaatcagccatcccaggagagtgaagagctagccaagaga
accaactgagatgaggcaggagttcaaacttcaggagacactcttcagaa
taggccaaaacaggattccataatgaagagtcccagaagtcccccctgct
cccctcacaccatctctgtgctccatgccagacaggttggggctctccac
tgtttactccttcatacaaaaagtatgtgaggctggggtctctgagacct
atgaattgtagtgtctcatgggagcagttgaggacaaggacattgtgggg
actctcttgtcctttggcttggaagtgtctcgctgctccccaagcatggc
ttgctgctttgcttggctttttgggagcagtgcaagggcacccagttgct
ggcttctttgtgggtgtctgcagacttcgttcatgcatgcccagacaggc
aagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102789527_102790011
seq2: B6Ng01-073H20.b_39_523

seq1  GAATTCAACTGAGGGTTTTCTGTGTATTTGTGTATGGGGGCATTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGAGGGTTTTCTGTGTATTTGTGTATGGGGGCATTTCTTGA  50

seq1  GATGGGATATTTATCTACTATATTTAGCTATATCAAGGACTGTTATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATATTTATCTACTATATTTAGCTATATCAAGGACTGTTATCATG  100

seq1  CTGGCCATATTTTCTATATAAAAATAGACAAGAATAGAACAAACTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATATTTTCTATATAAAAATAGACAAGAATAGAACAAACTATTTA  150

seq1  AAAAGGAGACTATTAACCTCCAAAGGACTGCCTATTTTGGAGAAAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACTATTAACCTCCAAAGGACTGCCTATTTTGGAGAAAGATAT  200

seq1  TTAGAACAGGCAGTTATCACTGTTCTAAAAGATACAAGCTCAGAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGGCAGTTATCACTGTTCTAAAAGATACAAGCTCAGAAAAGAA  250

seq1  TCTCTCTTCCAGAAGATATTTCTGGTGAATGAGAGGAAAGTTATCATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCCAGAAGATATTTCTGGTGAATGAGAGGAAAGTTATCATGAA  300

seq1  AGAAAATCAAAGGTTTGTGTGATTTGAGTCCAAGAACCGGCCAGGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAAAGGTTTGTGTGATTTGAGTCCAAGAACCGGCCAGGGTGTG  350

seq1  GTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  400

seq1  CAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAAACAGAGACATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAAACAGAGACATAGA  450

seq1  GAGAGAGGGAGAGAGGGGGAAAGGGAGAGAGGGAG  485
      |||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGAGAGAGGGGGAAAGGGAGAGAGGGAG  485

seq1: chr15_102921595_102922644
seq2: B6Ng01-073H20.g_69_1120 (reverse)

seq1  TTGCCTGTCTGGGCATGGCATGAACGAAGTCTGCAGACACCCACAAAGAA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCTGGGCAT-GCATGAACGAAGTCTGCAGACACCCACAAAGAA  49

seq1  GCCAGCAACTGGGTGCCCTTGCACCTGCTCCCAAAAAGCC-AGCCAAGCA  99
      ||||||||||||||||||||||| |||||||||||||||| ||| |||||
seq2  GCCAGCAACTGGGTGCCCTTGCA-CTGCTCCCAAAAAGCCAAGCAAAGCA  98

seq1  GCCAGCCATGCTTGGGGAGCAGCGAGACACTTCCAAGCCAGAGGACAAGA  149
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAAGCCATGCTTGGGGAGCAGCGAGACACTTCCAAGCCAAAGGACAAGA  148

seq1  GAGTCCCCAC-ATGTCCTTGTCCTCAACTGCTCCCATGAGACACTACAAT  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCACAATGTCCTTGTCCTCAACTGCTCCCATGAGACACTACAAT  198

seq1  TCATAGGTCTCAGAGA-CCCAGCCTCACATACTTTTTGTATGAAGGAGTA  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATAGGTCTCAGAGACCCCAGCCTCACATACTTTTTGTATGAAGGAGTA  248

seq1  AACAGTGGAGAG-CCCAACCTGTCTGGCATGGAGCACAGAGATGGTGTGA  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGAGAGCCCCAACCTGTCTGGCATGGAGCACAGAGATGGTGTGA  298

seq1  GGGGAGCAGGGGGGACTTCTGGGACTCTTCATTATGGAATCCTGTTTTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAGGGGGGACTTCTGGGACTCTTCATTATGGAATCCTGTTTTGG  348

seq1  CCTATTCTGAAGAGTGTCTCCTGAAGTTTGAACTCCTGCCTCATCTCAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTGAAGAGTGTCTCCTGAAGTTTGAACTCCTGCCTCATCTCAGT  398

seq1  TGGTTCTCTTGGCTAGCTCTTCACTCTCCTGGGATGGCTGATTTGACTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTTGGCTAGCTCTTCACTCTCCTGGGATGGCTGATTTGACTGC  448

seq1  CAGAGTCATTTGCTGGCTCTAATTTGTGTCTAAATGTAAGTTTCCACAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCATTTGCTGGCTCTAATTTGTGTCTAAATGTAAGTTTCCACAGG  498

seq1  CAGGGGCCTGGTGTGCTATTCCAGTATGCCTGCCTGCAGCTTGGAGAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCTGGTGTGCTATTCCAGTATGCCTGCCTGCAGCTTGGAGAAGC  548

seq1  TGAGGGCCCGTGGGAACCTTTTGTACTCATGCTAGATCCAGGATGACCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCCGTGGGAACCTTTTGTACTCATGCTAGATCCAGGATGACCCC  598

seq1  TTGGGCCTAGTCCCAACAAGCATGTCTATCCTTGTGATAGTGTCTAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTAGTCCCAACAAGCATGTCTATCCTTGTGATAGTGTCTAAAAT  648

seq1  GGCACACCTATGGGATACCTGCCCATAGGGGATCCCTCATTTTCAGAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCTATGGGATACCTGCCCATAGGGGATCCCTCATTTTCAGAATC  698

seq1  TGGGGTGACTTTCCTGGTCTCAGAATCCTGGGACTACCTCTTGAGAAGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGACTTTCCTGGTCTCAGAATCCTGGGACTACCTCTTGAGAAGTA  748

seq1  GGAGACAAGGGCAATATGACGCTACATTTCAAATACTGGAGTTGTTTGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAGGGCAATATGACGCTACATTTCAAATACTGGAGTTGTTTGGT  798

seq1  CGGTTGGTTGGATGGATGGATGGATGGATGGTTGGTTTGGTTTGGTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGTTGGATGGATGGATGGATGGATGGTTGGTTTGGTTTGGTTTTT  848

seq1  CAAGACAGGGTTTCTCTGTGTAGTCCTAGCTGTCCTGGAACCCACTCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGGGTTTCTCTGTGTAGTCCTAGCTGTCCTGGAACCCACTCTGT  898

seq1  AGACCAGGCTGACCTCAAACTCACAGAGATCCATCTAGCTTTATCTCCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGACCTCAAACTCACAGAGATCCATCTAGCTTTATCTCCCA  948

seq1  AGTTCTGGGGTTAAAGGTGTGCACTGCCACCACCCAGCTAAAATACTATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGGTTAAAGGTGTGCACTGCCACCACCCAGCTAAAATACTATC  998

seq1  CTTAACATATATGTATGAAAGTGTTCAGTAGGCATGTAGTTAGTGAATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATATATGTATGAAAGTGTTCAGTAGGCATGTAGTTAGTGAATGA  1048

seq1  ATTC  1050
      ||||
seq2  ATTC  1052